Contig 004259:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033P01Sequence488003221 (7)ref|XP_009762782.1|2e-51PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X3 [755004259 (4)ref|XP_010314247.1|7e-60PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X3 [
JMSF018I11Sequence489003221 (7)ref|XP_009762781.1|2e-52PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [744004259 (4)ref|XP_006349272.1|5e-54PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like [Solanu
JMSF020P22Sequence532004259 (4)ref|XP_008339433.1|52.8PREDICTED: uncharacterized protein LOC103402461 [Malus domestica] ref|XP_0083616
JMSF021P07Sequence695003221 (7)ref|XP_009762781.1|5e-92PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [690004259 (4)ref|XP_002527822.1|4e-44Squamous cell carcinoma antigen recognized by T-cells, putative [Ricinus commun

Alignment

This contig is upended


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rJMFF033P01+                                                   TGCCNGTAAGATGGATGTG
                      ____________________________________________________________
consensus                                                      TGCCNGTAAGATGGATGTG
 
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rJMFF033P01+          GTGGTAGAAGCAAGCAAACCATCAACTGCAAGCAAGAAAGAAAAGGAAGGTATTTCCACT
rJMSF018I11+                                                                    CT
                      ____________________________________________________________
consensus             GTGGTAGAAGCAAGCAAACCATCAACTGCAAGCAAGAAAGAAAAGGAAGGTATTTCCACT
 
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rJMFF033P01+          GGAAAGCCAAAACAGTACAATGACCAGTGCACTGCATTTATCTCTAACGTTAGCTTCCAG
rJMSF021P07+                                                             AGCTTCCAG
rJMSF018I11+          GGAAAGCCAAAACAGTACAATGACCAGTGCACTGCATTTATCTCTAACCTTAGCTTCCAG
                      ____________________________________________________________
consensus             GGAAAGCCAAAACAGTACAATGACCAGTGCACTGCATTTATCTCTAACGTTAGCTTCCAG
 
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rJMFF033P01+          GCAAATTATGATGACCTACAGAAGTTATTCAGTGATGTTGGTGGAGTTGTTGCTATTCGA
rJMSF021P07+          GCAAATTATGATGACCTACAGAAGTTATTCAGTGATGTTGGTGGAGTTGTTGCTATTCGA
rJMSF018I11+          GCAAATTATGATGACCTACAGAAGTTATTCAGTGATGTTGGTGGAGTTGTTGCTATTCGA
                      ____________________________________________________________
consensus             GCAAATTATGATGACCTACAGAAGTTATTCAGTGATGTTGGTGGAGTTGTTGCTATTCGA
 
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rJMFF033P01+          ATATTAACAGACAAGTACACTGGAAAATCAAGAGGATTGGCCTATGTGGATTTTTGCGAT
rJMSF021P07+          ATATTAACAGACAAGTACACTGGAAAATCAAGAGGATTGGCCTATGTGGATTTTTGCGAT
rJMSF018I11+          ATATTAACAGACAAGTACACTGGAAAATCAAGAGGATTGGCCTATGTGGATTTTTGCGAT
                      ____________________________________________________________
consensus             ATATTAACAGACAAGTACACTGGAAAATCAAGAGGATTGGCCTATGTGGATTTTTGCGAT
 
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rJMFF033P01+          GATGCACACCTTGCTGCAGCTTTGGCAAAGAATAGGCAAAAGCTGCATGGAAAAAAACTG
rJMSF021P07+          GATGCACACCTTGCTGCAGCTTTGGCAAAGAATAGGCAAAAGCTGCATGGAAAAAAACTG
rJMSF018I11+          GATGCACACCTTGCTGCAGCTTTGGCAAAGAATAGGCAAAAGCTGCATGGAAAAAAACTG
                      ____________________________________________________________
consensus             GATGCACACCTTGCTGCAGCTTTGGCAAAGAATAGGCAAAAGCTGCATGGAAAAAAACTG
 
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rJMFF033P01+          AGCATTCTGAGGTCAGATCCTCAGCAGAACAAAAAGAGGGGAAACCTTGGGAAAGGAATN
rJMSF021P07+          AGCATTCTGAGGTCAGATCCTCAGCAGAACAAAAAGAGGGGAAACCTTGGGAAAGGAATG
rJMSF018I11+          AGCATTCTGAGGTCAGATCCTCAGCAGAACAAAAAGAGGGGAAACCTTGGGAAAGGAATG
rJMSF020P22+                  GAGGTCAGATNCTCAGCAGAACAAAAAGAGGGGAAACCTTGGGAAAGGAATG
                      ____________________________________________________________
consensus             AGCATTCTGAGGTCAGATCCTCAGCAGAACAAAAAGAGGGGAAACCTTGGGAAAGGAATG
 
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rJMFF033P01+          CCAACAAAACATGATTCTGGTGGTCAAGGTTCAAAATCAGACTCCAAGGACAGTGGTGAA
rJMSF021P07+          CCAACAAAACATGATTCTGGTGGTCAAGGTTCAAAATCAGACTCCAAGGACAGTGGTGAA
rJMSF018I11+          CCAACAAAACATGATTCTGGTGGTCAAGGTTCAAAATCAGACTCCAAGGACAGTGGTGAA
rJMSF020P22+          CCANCAAAACATGATTCTNGTGGTCAAGGTTCAAAATCAGACTCCAAGNACAGTGGNGAA
                      ____________________________________________________________
consensus             CCAACAAAACATGATTCTGGTGGTCAAGGTTCAAAATCAGACTCCAAGGACAGTGGTGAA
 
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rJMFF033P01+          GTTTCAAGACAGAGTGGAGGTGGGCCTAAAAGAGATCAGTCAGCTGATAGGCAGAAAGAT
rJMSF021P07+          GTTTCAAGACAGAGTGGAGGTGGGCCTAAAAGAGATCAGTCAGCTGATAGGCAGAAAGAT
rJMSF018I11+          GTTTCAAGACAGAGTGGAGGTGGGCCTAAAAGAGATCAGTCAGCTGATAGGCAGAAAGAT
rJMSF020P22+          GNTTCANGACAGAGTGGAGGTGGGCCTAAAAGAGATCANTCAGCTGATAGGCAGAAAGAT
                      ____________________________________________________________
consensus             GTTTCAAGACAGAGTGGAGGTGGGCCTAAAAGAGATCAGTCAGCTGATAGGCAGAAAGAT
 
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rJMFF033P01+          GATATACAGCTGAAGGGTAGGAACATTTTTGCAATGCCAAGAGCTGTCAGCAAAAGTAAA
rJMSF021P07+          GATATACAGCTGAAGGGTAGGAACATTTTTGCAATGCCAAGAGCTGTCAGCAAAAGTAAA
rJMSF018I11+          GATATACAGCTGAAGGGTAGGAACATTTTTGCAATGCCAAGAGCTGTCAGCAAAAGTAAA
rJMSF020P22+          GATATACAGCTGAAGGGTAGGAACANTTTTGCAATNCCAAGAGCTGTCAGCAAAAGTAAA
                      ____________________________________________________________
consensus             GATATACAGCTGAAGGGTAGGAACATTTTTGCAATGCCAAGAGCTGTCAGCAAAAGTAAA
 
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rJMFF033P01+          CCAAAACTGGAGAAGATAGCTGAGGAAGGAGAAGACGAGAACCCTAAATCAAATGACGAG
rJMSF021P07+          CCAAAACTGGAGAAGATAGCTGAGGAAGGAGAAGACGAGAACCCTAAATCAAATGACGAG
rJMSF018I11+          CCAAAACTGGAGAAGATAGCTGAGGAAGGAGAAGACGAGAACCCTAAATCAAATGACGAG
rJMSF020P22+          CCAAAACTGGAGAAGATAGCTGAGGAAGGAGAAGACGAGAACCNTAAATCAAATGACGAG
                      ____________________________________________________________
consensus             CCAAAACTGGAGAAGATAGCTGAGGAAGGAGAAGACGAGAACCCTAAATCAAATGACGAG
 
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rJMFF033P01+          TTCCGCAAAATGTTCCTGAAATCTTGAAATATGCCATGTGGGAAAAGGTTTGTACATTAT
rJMSF021P07+          TTCCGCAAAATGTTCCTGAAATCTTGAAATATGCCATGTGGGAAAAGGTTTGTACATTAT
rJMSF018I11+          TTCCGCAAAATGTTCCTGAAATCTTGAAATATGCCATGTGGGAAAAGGTTTGTACATTAT
rJMSF020P22+          TTCCGCAAAATGTTCCTGAAATCTTGAAATATGCCATGTGGGAAAAGGTTTNTACATTAT
                      ____________________________________________________________
consensus             TTCCGCAAAATGTTCCTGAAATCTTGAAATATGCCATGTGGGAAAAGGTTTGTACATTAT
 
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rJMFF033P01+          ACCCGAACCCTGTTAGTGGAGTATGAACAGAAGCAAATGCTTTAGGAAACTGACTTCTAC
rJMSF021P07+          ACCCGAACCCTGTTAGTGGAGTATGAACAGAAGCAAATGCTTTAGGAAACTGACTTCTAC
rJMSF018I11+          ACCCGAACCCTGTTAGTGGAGTATGAACAGAAGCAAATGCTTTAGGAAACTGACTTCTAC
rJMSF020P22+          ACCCGAACCCTGTTAGTGGAGTATGAACAGAAGCAAATGCTTTAGGAAACTGACTTCTAC
                      ____________________________________________________________
consensus             ACCCGAACCCTGTTAGTGGAGTATGAACAGAAGCAAATGCTTTAGGAAACTGACTTCTAC
 
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rJMFF033P01+          TTGGTTTTAG                                                  
rJMSF021P07+          TTGGTTTTAGTGGAGGCATTGTGTTTCTTCTTGGTTTTAGTGGAGGCATTGTGTTTCTTC
rJMSF018I11+          TTGGTTTTAGTGGAGGCATTGTGTTTCTTCTTGGTTTTAGTGGAGGCATTGTGTTTCTTC
rJMSF020P22+          TTGGTTTTAGTGGAGGCATTGTGTTTCNTCTNGGTTTTAGTGGAGGCATTGTGTTTCTTC
                      ____________________________________________________________
consensus             TTGGTTTTAGTGGAGGCATTGTGTTTCTTCTTGGTTTTAGTGGAGGCATTGTGTTTCTTC
 
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rJMSF020P22+          CTAAATCATATATCACGCCTTGTTTTCAAGCATCTTATGCTAATGCATTGGATTATTATG
                      ____________________________________________________________
consensus             CTAAATCATATATCACGCCTTGTTTTCAAGCATCTTATGCTAATGCATTGGATTATTATG