Contig 004233:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006P08Sequence227000936 (25)sp|O49954.1|GCSP_SOLTU3e-12RecName: Full=Glycine dehydrogenase (decarboxylating), mitochondrial; AltName: 279004233 (4)
JMSF008M12Sequence157011967 (4)748004233 (4)ref|XP_004229333.1|5e-60PREDICTED: major facilitator superfamily domain-containing protein 12 [Solanum
JMSF016F03Sequence196011967 (4)749004233 (4)ref|XP_006359136.1|6e-79PREDICTED: major facilitator superfamily domain-containing protein 12-like isof
JMSF030D14Sequence156011967 (4)679004233 (4)ref|XP_006359136.1|3e-49PREDICTED: major facilitator superfamily domain-containing protein 12-like isof

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008M12+                                        GCTTCATTGTTTCTGTCATGCTACAGGAGC
rJMSF016F03+                                        GCTTCATTGTTTCTGTCATGCTACAGGAGC
                      ____________________________________________________________
consensus                                           GCTTCATTGTTTCTGTCATGCTACAGGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030D14+                                                GTCGGAGGCATCCTTTGGATAT
rJMSF008M12+          TAACTTGGACCAGCCAACGGATAAAAGCCTTCTATTCTGTCGGAGGCATCCTTTGGATAT
rJMSF016F03+          TAACTTGGACCAGCCAACGGATAAAAGCCTTCTATTCTGTCGGAGGCATCCTTTGGATAT
                      ____________________________________________________________
consensus             TAACTTGGACCAGCCAACGGATAAAAGCCTTCTATTCTGTCGGAGGCATCCTTTGGATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030D14+          TTTGTGGCATAGTAATACTGTTGCTGCCAAGAAACATGAATGTTTTTATATACATTTTGT
rJMSF008M12+          TTTGTGGCATAGTAATACTGTTGCTGCCAAGAAACATGAATGTTTTTATATACATTTTGT
rJMSF016F03+          TTTGTGGCATAGTAATACTGTTGCTGCCAAGAAACATGAATGTTTTTATATACATTTTGT
                      ____________________________________________________________
consensus             TTTGTGGCATAGTAATACTGTTGCTGCCAAGAAACATGAATGTTTTTATATACATTTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030D14+          CGGTGGTGATTGGCATCGCAAATGCCCTGATAATGGTAACTGGTGTAAGCATGCAAAGTG
rJMSF008M12+          CGGTGGTGATTGGCATCGCAAATGCCCTGATAATGGTAACTGGTGTAAGCATGCAAAGTG
rJMSF016F03+          CGGTGGTGATTGGCATCGCAAATGCCCTGATAATGGTAACTGGTGTAAGCATGCAAAGTG
                      ____________________________________________________________
consensus             CGGTGGTGATTGGCATCGCAAATGCCCTGATAATGGTAACTGGTGTAAGCATGCAAAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030D14+          TTCTAGTCGGTGAAGATCTTAATGGCTGTGCTTTTGTGTATGGATCGTTGAGTTTTCTTA
rJMSF008M12+          TTCTAGTCGGTGAAGATCTTAATGGCTGTGCTTTTGTGTATGGATCGTTGAGTTTTCTTA
rJMSF016F03+          TTCTAGTCGGTGAAGATCTTAATGGCTGTGCTTTTGTGTATGGATCGTTGAG-TTTCTTA
                      ____________________________________________________________
consensus             TTCTAGTCGGTGAAGATCTTAATGGCTGTGCTTTTGTGTATGGATCGTTGAGTTTTCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030D14+          GACAAAATATCGTGTGGGGTGGCGCTATTCATTCTCGAGTCCTATGAAGATTCTACTCCA
rJMSF008M12+          GACAAAATATCGTGTGGGGTGGCGCTATTCATTCTCGAGTCCTATGAAGATTCTACTCCA
rJMSF016F03+          GACAAAATATCGTGTGGGGTGGCGCTATTCATTCTCGAGTCCTATGAAGATTCTACTCCA
                      ____________________________________________________________
consensus             GACAAAATATCGTGTGGGGTGGCGCTATTCATTCTCGAGTCCTATGAAGATTCTACTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030D14+          GCGCTAAGCGACTGTAGCCCCATTTACGCTGGTATCTCCTTAACGCGATATGCCCTCGGC
rJMSF008M12+          GCGCTAAGCGACTGTAGCCCCATTTACGCTGGTATCTCCTTAACGCGATATGCCCTCGGC
rJMSF016F03+          GCGCTAAGCGACTGTAGCCCCATTTACGCTGGTATCTCCTTAACGCGATATGCCCTCGGC
                      ____________________________________________________________
consensus             GCGCTAAGCGACTGTAGCCCCATTTACGCTGGTATCTCCTTAACGCGATATGCCCTCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030D14+          CTCGTCCCGGCAGTCTGTGCGCTCGTGGGCGTTATAGTCACCTGCTCCATGAAACTCCAT
rJMSF008M12+          CTCGTCCCGGCAGTCTGTGCGCTCGTGGGCGTTATAGTCACCTGCTCCATGAAACTCCAT
rJMSF006P08+                                                       TCCATGAAACTCCAT
rJMSF016F03+          CTCGTCCCGGCAGTCTGTGCGCTCGTGGGCGTTATAGTCACCTGCTCCATGAAACTCCAT
                      ____________________________________________________________
consensus             CTCGTCCCGGCAGTCTGTGCGCTCGTGGGCGTTATAGTCACCTGCTCCATGAAACTCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030D14+          ACACACACCTTGAAGCCTCTAACCGAACCCCTTCTAGCATAGCACATAAAAGGGCCGAAT
rJMSF008M12+          ACACACACCTTGAAGCCTCTAACCGAACCCCTTCTAGCATAGCACATAAAAGGGCCGAAT
rJMSF006P08+          ACACACACCTNGAAGCCTCTAACCGAACCCCTTCTAGCATAGCACATAAAAGGGCCGAAT
rJMSF016F03+          ACACACACCTTGAAGCCTCTAACCGAACCCCTTCTAGCATAGCACATAAAAGGGCCGAAT
                      ____________________________________________________________
consensus             ACACACACCTTGAAGCCTCTAACCGAACCCCTTCTAGCATAGCACATAAAAGGGCCGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030D14+          TCGGTTTTGCAAAATCGGTTATTTGGTTTAAACCGAACTGAATTAACCGAATGAACACTC
rJMSF008M12+          TCGGTTTTGCAAAATCGGTTATTTGGTTTAAACCGAACTGAATTAACCGAATGAACACTC
rJMSF006P08+          TCGGTTTTGCAAAATNGGTTANTTGGTNTAAACCGAACTGAATTAACCGAATGAACACTC
rJMSF016F03+          TCGGTTTTGCAAAATCGGTTATTTGGTTTAAACCGAACTGAATTAACCGAATGAACACTC
                      ____________________________________________________________
consensus             TCGGTTTTGCAAAATCGGTTATTTGGTTTAAACCGAACTGAATTAACCGAATGAACACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030D14+          CTACGAAGCAGTTATGTATACAGCCATGTTACAGAAGAAAAGATTCATATTGTTGTTGTT
rJMSF008M12+          CTACGAAGCAGTTATGTATACAGCCATGTTACAGAAGAAAAGATTCATATTGTTGTTGTT
rJMSF006P08+          CTACGAAGCAGTTNTGTATACAGCCATGTNACAGAAGAAAAGATTCATATTGTTGTTGTT
rJMSF016F03+          CTACGAAGCAGTTATGTATACAGCCATGTTACAGAAGAAAAGATTCATATTGTTGTTGTT
                      ____________________________________________________________
consensus             CTACGAAGCAGTTATGTATACAGCCATGTTACAGAAGAAAAGATTCATATTGTTGTTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030D14+          AATGGAAGTTGACGGGTAAAGCTGTTGTACCAGGACAGGTGGCTCAATCTCTGCCACTCA
rJMSF008M12+          AATGGAAGTTGACGGGTAAAGCTGTTGTACCAGGACAGGTGGCTCAATCTCTGCCACTCA
rJMSF006P08+          AATGGAAGTTGACGGGTAAAGCTGTTGTACCAGGACAGGTGGCTCAATCTCTGCCACTCA
rJMSF016F03+          AATGGAAGTTGACGGGTAAAGCTGTTGTACCAGGACAGGTGGCTCAATCTCTGCCACTCA
                      ____________________________________________________________
consensus             AATGGAAGTTGACGGGTAAAGCTGTTGTACCAGGACAGGTGGCTCAATCTCTGCCACTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF030D14+          TAGGAAATTATTGTTGTACAAACTTGATTATGTATCATGATGTACCCCCCTCCAAAT   
rJMSF008M12+          TAGGAAATTATTGTTGTACAAACTTGATTATGTATCATGATGTACCCCCCTCCAAAT   
rJMSF006P08+          TAGGAAACTNTTGTTGTACAAACT                                    
rJMSF016F03+          TAGGAAATTATTGTTGTACAAACTTGATTATGTATCATGATGTACCCCCCTCCAAATGTT
                      ____________________________________________________________
consensus             TAGGAAATTATTGTTGTACAAACTTGATTATGTATCATGATGTACCCCCCTCCAAATGTT