Contig 004221:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN030P05Sequence616004221 (3)gb|AAG31173.1|1e-144COP1 [Ipomoea nil]
JMSF014B12Sequence476006457 (2)gb|AAG31173.1|3e-91COP1 [Ipomoea nil]787004221 (3)gb|AAG31173.1|4e-134COP1 [Ipomoea nil]
JMSF015C13Sequence384006457 (2)gb|AAG31173.1|2e-60COP1 [Ipomoea nil]728004221 (3)gb|AAG31173.1|3e-146COP1 [Ipomoea nil]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN030P05- AGTACACTAAAAACCACATTGCTAGTAGTGATTACGATGGAAT
                      ____________________________________________________________
consensus AGTACACTAAAAACCACATTGCTAGTAGTGATTACGATGGAAT
 
. : . : . : . : . : . :
JMFN030P05- AGTGACTGTCTGGGATGTGACTACGAGACAGAGTGTTATGGAATATGAAGAACATGAAAA
                      ____________________________________________________________
consensus AGTGACTGTCTGGGATGTGACTACGAGACAGAGTGTTATGGAATATGAAGAACATGAAAA
 
. : . : . : . : . : . :
JMFN030P05- ACGGGCATGGAGTGTCGATTTTTCTCGAACAGATCCCTCAATGCTTGTATCCGGTAGTGA
rJMSF015C13+ GGGCATGGAGTGTCGATTTTTCTCGAACAGATCCCTCAATGCTTGTATCCGGTAGTGA
rJMSF014B12+ GGTAGTGA
                      ____________________________________________________________
consensus ACGGGCATGGAGTGTCGATTTTTCTCGAACAGATCCCTCAATGCTTGTATCCGGTAGTGA
 
. : . : . : . : . : . :
JMFN030P05- TGATTGTAAGGTTAAAGTCTGGTGCACAAAGCAAGAAGCAAGTGCCCTTAATATTGACAT
rJMSF015C13+ TGATTGTAAGGTTAAAGTCTGGTGCACAAAGCANGAAGCAAGTGCCCTTAATATTGACAT
rJMSF014B12+ TGATTGTAAGGTTAAAGTCTGGTGCACAAAGCAAGAAGCAAGTGCCCTTAATATTGACAC
                      ____________________________________________________________
consensus TGATTGTAAGGTTAAAGTCTGGTGCACAAAGCAAGAAGCAAGTGCCCTTAATATTGACAT
 
. : . : . : . : . : . :
JMFN030P05- GAAGGCAAATATATGCTGTGTGAAATATAATCCCGGATCTAGTTTTCATGTTGCGGTTGG
rJMSF015C13+ GAAGGCAAATATATGCTGTGTGAAATATAATCCCGGATCTAGTTTTCATGTTGCGGTTGG
rJMSF014B12+ GAAGGCAAATATATGCTGTGTGAAATATAATCCCGGATCTAGTTTTCATGTTGCGGTTGG
                      ____________________________________________________________
consensus GAAGGCAAATATATGCTGTGTGAAATATAATCCCGGATCTAGTTTTCATGTTGCGGTTGG
 
. : . : . : . : . : . :
JMFN030P05- CTCAGCAGACCATCACATCCATTATTATGACCTGAGAAACACCAGCGCTCCACTCCATAT
rJMSF015C13+ CTCAGCAGACCATCACATCCATTATTATGACCTGAGAAACACCAGCGCTCCACTCCATAT
rJMSF014B12+ CTCAGCAGACCATCACATCCATTATTATGACCTGAGAAACACCAGCGCTCCACTCCATAT
                      ____________________________________________________________
consensus CTCAGCAGACCATCACATCCATTATTATGACCTGAGAAACACCAGCGCTCCACTCCATAT
 
. : . : . : . : . : . :
JMFN030P05- TTTCAGTGGCCACAAAAAAGCTGTTTCATATGTAAAATTTTTGTCTAGCCATGAGCTTGC
rJMSF015C13+ TTTCAGTGGCCACAAAAAAGCTGTTTCATATGTAAAATTTTTGTCTAGCCATGAGCTTGC
rJMSF014B12+ TTTCAGTGGCCACAAAAAAGCTGTTTCATATGTAAAATTTTTGTCTAGCCATGAGCTTGC
                      ____________________________________________________________
consensus TTTCAGTGGCCACAAAAAAGCTGTTTCATATGTAAAATTTTTGTCTAGCCATGAGCTTGC
 
. : . : . : . : . : . :
JMFN030P05- ATCAGCATCAACTGACAGCACTCTGCGACTATGGGATGTAAAAGATAATTCACCTGTTCG
rJMSF015C13+ ATCAGCATCAACTGACAGCACTCTGCGACTATGGGATGTAAAAGATAATTCACCTGTTCG
rJMSF014B12+ ATCAGCATCAACTGACAGCACTCTGCGACTATGGGATGTAAAAGATAATTCACCTGTTCG
                      ____________________________________________________________
consensus ATCAGCATCAACTGACAGCACTCTGCGACTATGGGATGTAAAAGATAATTCACCTGTTCG
 
. : . : . : . : . : . :
JMFN030P05- TGTATTTAGAGGGCATACAAATGAGAAAAATTTTGTCGGTCTCTCTGTGAGCAACGAATT
rJMSF015C13+ TGTATTTNGAGGGCATACAAATGAGAAAAATTTTGTCGGTCTCTCTGTGAGCAACGAATT
rJMSF014B12+ TGTATTTAGAGGGCATACAAATGAGAAAAATTTTGTCGGTCTCTCTGTGAGCAACGAATT
                      ____________________________________________________________
consensus TGTATTTAGAGGGCATACAAATGAGAAAAATTTTGTCGGTCTCTCTGTGAGCAACGAATT
 
. : . : . : . : . : . :
JMFN030P05- CATTTCTTGCGGCAGTGAAACCAATGAGGTTTTTGTCTACCACAAGGCAATCTCGAAACC
rJMSF015C13+ CATTTCTTGCGGCAGTGAAACCAATGAGGTTTTTGTCTACCACAAGGCAATCTCGAAACC
rJMSF014B12+ CATTTCTTGCGGCAGTGAAACCAATGAGGTTTTTGTCTACCACAAGGCAATCTCGAAACC
                      ____________________________________________________________
consensus CATTTCTTGCGGCAGTGAAACCAATGAGGTTTTTGTCTACCACAAGGCAATCTCGAAACC
 
. : . : . : . : . : . :
JMFN030P05- TGTGACTTGGCATANGTTTGGTTCCCCAGACGT
rJMSF015C13+ TGTGACTTGGCATAGGTTTGGTTCCCCAGACGTAGACGAAGCCGATGAAGACGTAACGTC
rJMSF014B12+ TGTGACTTGGCATAGGTTTGGTTCCCCAGACGTAGACGAAGCCGATGAAGACGTAACGTC
                      ____________________________________________________________
consensus TGTGACTTGGCATAGGTTTGGTTCCCCAGACGTAGACGAAGCCGATGAAGACGTAACGTC
 
. : . : . : . : . : . :
rJMSF015C13+ TTTCTTCATCAGTGCAGTATGCTGGAAGAGTGATAGCCCTACAATGCTAGCTGCTAACAG
rJMSF014B12+ TTTCTTCATCAGTGCAGTATGCTGGAAGAGTGATAGCCCTACAATGCTAGCTGCTAACAG
                      ____________________________________________________________
consensus TTTCTTCATCAGTGCAGTATGCTGGAAGAGTGATAGCCCTACAATGCTAGCTGCTAACAG
 
. : . : . : . : . : . :
rJMSF015C13+ CCAGGGAACCATCAAGGTTCTGGTGCTTGCTGCCTGACGTTGTGAGTTGTAATATAGTGG
rJMSF014B12+ CCAGGGAACCATCAAGGTTCTGGTGCTTGCTGCCTGA-GTTGTGAGTTGTAATATAGTGG
                      ____________________________________________________________
consensus CCAGGGAACCATCAAGGTTCTGGTGCTTGCTGCCTGACGTTGTGAGTTGTAATATAGTGG
 
. : . : . : . : . : . :
rJMSF015C13+ TTATAGAGCNTGATTAAAGTTTAATTACATCCAAGTATTATTGTTCCCAATGAAGAAATT
rJMSF014B12+ TTATAGAGCTTGATTAAAGTTTAATTACATCCAAGTATTATTGTTCCCAATGAAGAAATT
                      ____________________________________________________________
consensus TTATAGAGCTTGATTAAAGTTTAATTACATCCAAGTATTATTGTTCCCAATGAAGAAATT
 
. : . : . : . : . : . :
rJMSF015C13+ CATCATTGTT
rJMSF014B12+ CATCATTGTTTTGTAGATATGGGCGAGCCAATATTCTAAAATCTAAAATAGAAACTTGTT
                      ____________________________________________________________
consensus CATCATTGTTTTGTAGATATGGGCGAGCCAATATTCTAAAATCTAAAATAGAAACTTGTT
 
. : . : . : . : . : . :
rJMSF014B12+ TAGAATGAATTCAAAATCCCCTAATATTATAAGTATAAACTAATTATATAGTACTGTAAT
                      ____________________________________________________________
consensus TAGAATGAATTCAAAATCCCCTAATATTATAAGTATAAACTAATTATATAGTACTGTAAT