Contig 004220:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013H01Sequence236000847 (5)emb|CDO98120.1|3e-10unnamed protein product [Coffea canephora]761004220 (2)ref|XP_006356198.1|2e-56PREDICTED: uncharacterized protein LOC102592487 isoform X1 [Solanum tuberosum]
JMSF033F21Sequence657000847 (5)ref|XP_009797316.1|217PREDICTED: uncharacterized protein LOC104243764 [Nicotiana sylvestris]760004220 (2)ref|XP_006356198.1|5e-53PREDICTED: uncharacterized protein LOC102592487 isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF033F21+                                       TGCAAGAAGCAATGCNCCTGTCAAATATGGA
rJMSF013H01+                             TCGGAAAGTATGCAAGAAGCAATGCACCTGTCAAATATGGA
                      ____________________________________________________________
consensus                                TCGGAAAGTATGCAAGAAGCAATGCACCTGTCAAATATGGA
 
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rJMSF033F21+          GATGAGTGGTGCAGAGTATGTCAGGAAGGAAATCCCTCTTCNTGTTATGCCATCGTCATC
rJMSF013H01+          GATGAGTGGTGCAGAGTATGTCAGGAAGGAAATCCCTCTTCTTGTTATGCCATCGTCATC
                      ____________________________________________________________
consensus             GATGAGTGGTGCAGAGTATGTCAGGAAGGAAATCCCTCTTCTTGTTATGCCATCGTCATC
 
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rJMSF033F21+          ACTTCTTAATCTCGATACACCTTTGAATTCATTTACTGATCTGCAACGCGTACTATATGA
rJMSF013H01+          ACTTCTTAATCTCGATACACCTTTGAATTCATTTACTGATCTGCAACGCGTACTATATGA
                      ____________________________________________________________
consensus             ACTTCTTAATCTCGATACACCTTTGAATTCATTTACTGATCTGCAACGCGTACTATATGA
 
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rJMSF033F21+          AGAGGAGCGGACTGCATTTAATCAAGCAGTTACACAAAACATGAGGTGGCACATCCAATA
rJMSF013H01+          AGAGGAGCGGACTGCATTTAATCAAGCAGTTACACAAAACATGAGGTGGCACATCCAATA
                      ____________________________________________________________
consensus             AGAGGAGCGGACTGCATTTAATCAAGCAGTTACACAAAACATGAGGTGGCACATCCAATA
 
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rJMSF033F21+          TATTGTTATTTCTCTTTTGCTTTGCGTGACGCTATGTGCTGCTTTTGATTCTTGTCATCG
rJMSF013H01+          TATTGTTATTTCTCTTTTGCTTTGCGTGACGCTATGTGCTGCTTTTGATTCTTGTCATCG
                      ____________________________________________________________
consensus             TATTGTTATTTCTCTTTTGCTTTGCGTGACGCTATGTGCTGCTTTTGATTCTTGTCATCG
 
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rJMSF033F21+          TTGACATCATCTTTTTTAGGGATGGGAAAGTGCACCCTCTAACTTTTATCCATCACACAT
rJMSF013H01+          TTGACATCATCTTTTTTAGGGATGGGAAAGTGCACCCTCTAACTTTTATCCATCACACAT
                      ____________________________________________________________
consensus             TTGACATCATCTTTTTTAGGGATGGGAAAGTGCACCCTCTAACTTTTATCCATCACACAT
 
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rJMSF033F21+          CCACATATCAGGCTTCCATGTGCAAACTGATGGAATATTGCTTGAGCCCTGCCATTATTG
rJMSF013H01+          CCACATATCAGGCTTCCATGTGCAAACTGATGGAATATTGCTTGAGCCCTGCCATTATTG
                      ____________________________________________________________
consensus             CCACATATCAGGCTTCCATGTGCAAACTGATGGAATATTGCTTGAGCCCTGCCATTATTG
 
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rJMSF033F21+          CTCTCCAGGACCGCTTGCGAGAAAATGAAATTCAGCTAAAGATGCTAGCTGATGAAGCAA
rJMSF013H01+          CTCTCCAGGACCGCTTGCGAGAAAATGAAATTCAGCTAAAGATGCTAGCTGATGAAGCAA
                      ____________________________________________________________
consensus             CTCTCCAGGACCGCTTGCGAGAAAATGAAATTCAGCTAAAGATGCTAGCTGATGAAGCAA
 
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rJMSF033F21+          AGGTTTTGGAATCGGAGACTAAACGAGCAGAGACAACTTCTACAGTTTCTCCTCGTAGAG
rJMSF013H01+          AGGTTTTGGAATCGGAGACTAAACGAGCAGAGACAACTTCTACAGTTTCTCCTCGTAGAG
                      ____________________________________________________________
consensus             AGGTTTTGGAATCGGAGACTAAACGAGCAGAGACAACTTCTACAGTTTCTCCTCGTAGAG
 
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rJMSF033F21+          GTAGCCCTTCCAATTCACCAGGCCACAAAGACTTGTATCCTCCTGGTGAATTAAGCAACA
rJMSF013H01+          GTAGCCCTTCCAATTCACCAGGCCACAAAGACTTGTATCCTCCTGGTGAATTAAGCAACA
                      ____________________________________________________________
consensus             GTAGCCCTTCCAATTCACCAGGCCACAAAGACTTGTATCCTCCTGGTGAATTAAGCAACA
 
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rJMSF033F21+          CAAGAACTTTTGGTAGTTCTGGTAGCCGGAGCAGAAAAGGATCCTAAACCCTAATATAAA
rJMSF013H01+          CAAGAACTTTTGGTAGTTCTGGTAGCCGGAGCAGAAAAGGATCCTAAACCCTAATATAAA
                      ____________________________________________________________
consensus             CAAGAACTTTTGGTAGTTCTGGTAGCCGGAGCAGAAAAGGATCCTAAACCCTAATATAAA
 
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rJMSF033F21+          GATACTAGGATCCTTACTTTAAGCAAGTGTATTATATGTAGTAGTTGGGGGTATTTCTCC
rJMSF013H01+          GATACTAGGATCCTTACTTTAAGCAAGTGTATTATATGTAGTAGTTGGGGGTATTTCTCC
                      ____________________________________________________________
consensus             GATACTAGGATCCTTACTTTAAGCAAGTGTATTATATGTAGTAGTTGGGGGTATTTCTCC
 
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rJMSF033F21+          CTCTTTTTTGTGCTTCCTTTGAACTGTAATTTTTGGATATGTTGAGAAAGTTCATTTTG 
rJMSF013H01+          CTCTTTTTTGTGCTTCCTTTGAACTGTAATTTTTGGATATGTTGAGAAAGTTCATTTTGT
                      ____________________________________________________________
consensus             CTCTTTTTTGTGCTTCCTTTGAACTGTAATTTTTGGATATGTTGAGAAAGTTCATTTTGT