Contig 004214:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF007L21+                                                               GTGATGA
                      ____________________________________________________________
consensus                                                                  GTGATGA
 
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rJMSF007L21+          TAATCTTAAGCAAAAAGGCTACTTGGATGATGACACTTGTATATGGCAGGGCAATCCAGA
                      ____________________________________________________________
consensus             TAATCTTAAGCAAAAAGGCTACTTGGATGATGACACTTGTATATGGCAGGGCAATCCAGA
 
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rJMSF007L21+          TTTGTGTAAAATTTTCACATAAAATCTGCCGATTTGCAGCCATGGCTGGTGTCAAATGCT
rJMSF011P12+                     TTTTCACATAAAATCTGCCGA-TTGCAGCCATGGCTGGTGTCAAATGCT
                      ____________________________________________________________
consensus             TTTGTGTAAAATTTTCACATAAAATCTGCCGATTTGCAGCCATGGCTGGTGTCAAATGCT
 
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rJMSF007L21+          TCAATGCCTTAATAGATACAGATTTGAGCCTCAATTTCTTTATGCTTTTTGGGGGGCCAA
rJMSF011P12+          TCAATGCCTTAATAGATACAGATTTGAGCCTCAATTTCTTTATGCTTTTTGGGGGGCCAA
                      ____________________________________________________________
consensus             TCAATGCCTTAATAGATACAGATTTGAGCCTCAATTTCTTTATGCTTTTTGGGGGGCCAA
 
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rJMSF007L21+          TTGTCTTTGTACATTTGTTTGTGCTTTGCATTTGCAGTGGAAATAATGGACTGGAGCTTT
rJMSF011P12+          TTGTCTTTGTACATTTGTTTGTGCTTTGCATTTGCAGTGGAAATAATGGACTGGAGCTTT
                      ____________________________________________________________
consensus             TTGTCTTTGTACATTTGTTTGTGCTTTGCATTTGCAGTGGAAATAATGGACTGGAGCTTT
 
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rJMSF007L21+          AAAATTCTTAATCTAGATCAACTTGATTTAGGTTGAACAAGTAAGCCATGCTTTGGTTTC
rJMSF011P12+          AAAATTCTTAATCTAGATCAACTTGATTTAGGTTGAACAAGTAAGCCATGCTTTGGTTTC
                      ____________________________________________________________
consensus             AAAATTCTTAATCTAGATCAACTTGATTTAGGTTGAACAAGTAAGCCATGCTTTGGTTTC
 
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rJMSF007L21+          TATTTGGGTTTATTCAATGGCCTCGGAGGCTGGTATTTAACACATTGATTTTGTTCCATA
rJMSF011P12+          TATTTGGGTTTATTCAATGGCCTCGGAGGCTGGTATTTAACACATTGATTTTGTTCCATA
                      ____________________________________________________________
consensus             TATTTGGGTTTATTCAATGGCCTCGGAGGCTGGTATTTAACACATTGATTTTGTTCCATA
 
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rJMSF007L21+          AGTTCCCTAGCAGGCTAGCACTACCATACATGGTGCCATGGTGGTCTTGTTGCTTCTGAG
rJMSF011P12+          AGTTCCCTAGCAGGCTAGCACTACCATACATGGTGCCATGGTGGTCTTGTTGCTTCTGAG
                      ____________________________________________________________
consensus             AGTTCCCTAGCAGGCTAGCACTACCATACATGGTGCCATGGTGGTCTTGTTGCTTCTGAG
 
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rJMSF007L21+          CAGCTGCAGTATCTTTTCAACTAACCTTCAGCTCGGAAGGCCAAACTCCATCTCTAAGAA
rJMSF011P12+          CAGCTGCAGTATCTTTTCAACTAACCTTCAGCTCGGAAGGCCAAACTCCATCTCTAAGAA
                      ____________________________________________________________
consensus             CAGCTGCAGTATCTTTTCAACTAACCTTCAGCTCGGAAGGCCAAACTCCATCTCTAAGAA
 
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rJMSF007L21+          GAGGAAAGCGAGACGGAAAAATGGTGCAGTGATGATAAGTCCTTTCAAGAAAAGTAATAA
rJMSF011P12+          GAGGAAAGCGAGACGGAAAAATGGTGCAGTGATGATAAGTCCTTTCAAGAAAAGTAATAA
                      ____________________________________________________________
consensus             GAGGAAAGCGAGACGGAAAAATGGTGCAGTGATGATAAGTCCTTTCAAGAAAAGTAATAA
 
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rJMSF007L21+          GGCGATGGAGGAAAAATAAACCTGGAACTTGGCTAATAGCTCCAATTTGTGTGTGGCTAA
rJMSF011P12+          GGCGATGGAGGAAAAATAAACCTGGAACTTGGCTAATAGCTCCAATTTGTGTGTGGCTAA
                      ____________________________________________________________
consensus             GGCGATGGAGGAAAAATAAACCTGGAACTTGGCTAATAGCTCCAATTTGTGTGTGGCTAA
 
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rJMSF007L21+          TATGGAGTTTATTTTGGATATGGAGTTTGTTGTGAAGTTAGAGGAGCAGATCTTGAAGAT
rJMSF011P12+          TATGGAGTTTATTTTGGATATGGAGTTTGTTGTGAAGTTAGAGGAGCAGATCTTGAAGAT
                      ____________________________________________________________
consensus             TATGGAGTTTATTTTGGATATGGAGTTTGTTGTGAAGTTAGAGGAGCAGATCTTGAAGAT
 
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rJMSF007L21+          GATACTGTGAAGAACAGTGCAGAAAGCAATGTGTGCTAATGACCAACAGATTGTTGTTAT
rJMSF011P12+          GATACTGTGAAGAACAGTGCAGAAAGCAATGTGTGCTAATGACCAACAGATTGTTGTTAT
                      ____________________________________________________________
consensus             GATACTGTGAAGAACAGTGCAGAAAGCAATGTGTGCTAATGACCAACAGATTGTTGTTAT
 
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rJMSF007L21+          TTTGTACCCTAATTAAATCACTTGTGAATATT                            
rJMSF011P12+          TTTGTACCCTAATTAAATCACTTGTGAATATTTAGGTTGTCATTTATAAAACATTTAAGC
                      ____________________________________________________________
consensus             TTTGTACCCTAATTAAATCACTTGTGAATATTTAGGTTGTCATTTATAAAACATTTAAGC
 
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rJMSF011P12+          CAATTCTTATGAACCATTGCACCTTGTAGTTTGTGGGGGCATTCCATGTTTTGTGAAATT
                      ____________________________________________________________
consensus             CAATTCTTATGAACCATTGCACCTTGTAGTTTGTGGGGGCATTCCATGTTTTGTGAAATT