Contig 004207:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003F24Sequence388006760 (8)ref|XP_006342009.1|3e-27PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti680004207 (7)ref|XP_011083887.1|4e-73PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti
JMSF010A03Sequence267006760 (8)ref|XP_009767345.1|1e-17PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti807004207 (7)ref|XP_009767345.1|2e-93PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti
JMSF010K08Sequence386006760 (8)ref|XP_006342009.1|4e-27PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti766004207 (7)gb|EYU38854.1|1e-89hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata]
JMSF015H19Sequence227006760 (8)ref|XP_009767345.1|1e-11PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti779004207 (7)gb|EYU38854.1|2e-90hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata]
JMSF038F12Sequence643006760 (8)ref|XP_006342010.1|9e-84PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti929004207 (7)gb|EYU38854.1|1e-115hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata]
JMSF050P01Sequence564006760 (8)ref|XP_006342009.1|5e-70PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti797004207 (7)gb|EYU38854.1|5e-90hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata]
JMSF052J20Sequence683006760 (8)ref|XP_006342009.1|9e-90PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti863004207 (7)ref|XP_009767345.1|3e-92PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF038F12+ TATTATGATGACCCAATGGTCTTGAGATATTTAGAGAGGTTAG
                      ____________________________________________________________
consensus TATTATGATGACCCAATGGTCTTGAGATATTTAGAGAGGTTAG
 
. : . : . : . : . : . :
rJMSF038F12+ AGGGAGTTGGTGGTTCACCTTTGGCTGCTGCTGCAGCTATTGCAAGAATTGGGGCTGAAG
                      ____________________________________________________________
consensus AGGGAGTTGGTGGTTCACCTTTGGCTGCTGCTGCAGCTATTGCAAGAATTGGGGCTGAAG
 
. : . : . : . : . : . :
rJMSF038F12+ CTACTGCAGTGCTTGATAGTGTGAAGGTTAGTGCAATTCAGGCATTGCAGAAGGTTATTC
rJMSF010A03+ TTC
                      ____________________________________________________________
consensus CTACTGCAGTGCTTGATAGTGTGAAGGTTAGTGCAATTCAGGCATTGCAGAAGGTTATTC
 
. : . : . : . : . : . :
rJMSF038F12+ CCCTTGGTGATGGGGAAACTAGTGTTAGACGGCATGGGAACAGTTTTTATACAGCAACAG
rJMSF010A03+ CCCTTGGTGATGGGGAAACTAGTGTTAGACGGCATGGGAACAGTTTTTATACAGCNACAG
rJMSF015H19+ CAGCNACAG
rJMSF050P01+ ATGGGGAAACTAGTGNTAGACGGCATGGGAACAGTTTTTATACAGCAACAG
rJMSF052J20+ ATGGGGAAACTAGTGTTAGACGGCATGGGAACAGTTTTTATACAGCAACAG
                      ____________________________________________________________
consensus CCCTTGGTGATGGGGAAACTAGTGTTAGACGGCATGGGAACAGTTTTTATACAGCAACAG
 
. : . : . : . : . : . :
rJMSF038F12+ -AAAGTGACGAGCTGAGTCATGGTGACAAAACTTTTCCAGAAAACATGGCTGGTTTTGCC
rJMSF010A03+ -AAAGTGACGAGCTGAGTCATGGTGACAAAACNTTTCCAGAAAACATGGCTGGTTTTGCC
rJMSF015H19+ -AAAGTGACGAGCTGAGTCATGGTGACAAAACTTTTCCAGAAAACATGGCTGGTTTTGCC
rJMSF050P01+ AAAAGTGACGAGCTGAGTCATGGTGACAAAACTTTTCCAGNAAACATGGCTGGTTTTGCC
rJMSF052J20+ -AAAGTGACGAGCTGAGTCATGGTGACAAAACTTTTCCAGAAAACATGGCTGGTTTTGCC
                      ____________________________________________________________
consensus -AAAGTGACGAGCTGAGTCATGGTGACAAAACTTTTCCAGAAAACATGGCTGGTTTTGCC
 
. : . : . : . : . : . :
rJMSF038F12+ GAGAGATCACC-TTCTGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
rJMSF010A03+ GAGAGATCACC-TTCTGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
rJMSF015H19+ GAGAGATCACC-TTCTGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
rJMSF050P01+ GAGAGATCACCTTTCTGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
rJMSF052J20+ GAGAGATCACC-TTCTGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
rJMSF010K08+ TGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
                      ____________________________________________________________
consensus GAGAGATCACC-TTCTGATGACCAGGAGCAAGAAATGATTACTGAAAAAATAAAAGATCT
 
. : . : . : . : . : . :
rJMSF038F12+ TGTTGTTAAGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
rJMSF010A03+ TGTTGTTAAGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
rJMSF015H19+ TGTTGTTAAGATTACATCNGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
rJMSF050P01+ TGTTGTTAAGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
rJMSF052J20+ TGTTGTTAAGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
rJMSF003F24+ AGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
rJMSF010K08+ TGTTGTTAAGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
                      ____________________________________________________________
consensus TGTTGTTAAGATTACATCTGCAGGTGTGGCTGTTGGGTTGCTGACATTAATTGGGTTAAA
 
. : . : . : . : . : . :
rJMSF038F12+ GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
rJMSF010A03+ GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
rJMSF015H19+ GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
rJMSF050P01+ GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
rJMSF052J20+ GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
rJMSF003F24+ GTTTTTATCTAAATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
rJMSF010K08+ GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
                      ____________________________________________________________
consensus GTTTTTATCT-AATAGAGCTGACTCTTCCATTCTACGTAAAGATGACGGATCATCTGTTA
 
. : . : . : . : . : . :
rJMSF038F12+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
rJMSF010A03+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
rJMSF015H19+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
rJMSF050P01+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
rJMSF052J20+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
rJMSF003F24+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
rJMSF010K08+ CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
                      ____________________________________________________________
consensus CTGCTGATGTTGTCAGCATAGGCCCCTCAAAAGTTGAAGTATCTGAGGAAGTTCCTAGAA
 
. : . : . : . : . : . :
rJMSF038F12+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
rJMSF010A03+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
rJMSF015H19+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
rJMSF050P01+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
rJMSF052J20+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
rJMSF003F24+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
rJMSF010K08+ TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
                      ____________________________________________________________
consensus TGGAAGCCAGGTTTGCTGAAAGCCTCGTTCGCAAGTGGCAGAACATTAAATCTCAGGCTC
 
. : . : . : . : . : . :
rJMSF038F12+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
rJMSF010A03+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
rJMSF015H19+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
rJMSF050P01+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
rJMSF052J20+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
rJMSF003F24+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
rJMSF010K08+ TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
                      ____________________________________________________________
consensus TGGGACCTGACCATCGTCTTGAAAAGCTGTCAGAGATCTTGGATGGTCAGATGCTAAAAG
 
. : . : . : . : . : . :
rJMSF038F12+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
rJMSF010A03+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
rJMSF015H19+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
rJMSF050P01+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
rJMSF052J20+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
rJMSF003F24+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
rJMSF010K08+ TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
                      ____________________________________________________________
consensus TTTGGACAGACCGCGCCGCAGAAATCGCACAGCATGGTTGGTTTTGGGACTATACTCTGC
 
. : . : . : . : . : . :
rJMSF038F12+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
rJMSF010A03+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
rJMSF015H19+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
rJMSF050P01+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
rJMSF052J20+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
rJMSF003F24+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
rJMSF010K08+ AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
                      ____________________________________________________________
consensus AGAACCTCACCATTGACAGTGTTACTGTCTCAGTTGATGGGCGGCGTGCCATTGTGGAAG
 
. : . : . : . : . : . :
rJMSF038F12+ CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
rJMSF010A03+ CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
rJMSF015H19+ CAACTCTTGAAGAATNTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
rJMSF050P01+ CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
rJMSF052J20+ CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
rJMSF003F24+ CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
rJMSF010K08+ CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
                      ____________________________________________________________
consensus CAACTCTTGAAGAATCTGCTCAGCTGACTGATGCAGCTCATCCTGAACACGATGACTCAT
 
. : . : . : . : . : . :
rJMSF038F12+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
rJMSF010A03+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
rJMSF015H19+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
rJMSF050P01+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
rJMSF052J20+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
rJMSF003F24+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
rJMSF010K08+ ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
                      ____________________________________________________________
consensus ACAGCACAACATACACGACAAGATATGAGCTTTCCTGTGGAAAATCTGGATGGAGAATTG
 
. : . : . : . : . : . :
rJMSF038F12+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAAT
rJMSF010A03+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
rJMSF015H19+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
rJMSF050P01+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
rJMSF052J20+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
rJMSF003F24+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
rJMSF010K08+ TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
                      ____________________________________________________________
consensus TAGAAGGAGCTGTCCTCAAGTCATAATATGGGTGTATATGTTCATCAATGTAAATTCTAG
 
. : . : . : . : . : . :
rJMSF010A03+ CCAATTTATGAACTCCTTTGTGCCACA
rJMSF015H19+ CCAATTTATGAACTCCTTTGTGCCACATATATTCTAATCATGGCTTAATAATT
rJMSF050P01+ CCAATTTATGAACTCCTTTGTGCCACA
rJMSF052J20+ CCAATTTATGAACTCCTTTGTGCCACATATATTCTAATCATGGCTTAATAATTTCCTTTT
rJMSF003F24+ CCAATTTATGAACTCCTTTGTGCCACATATATTCTAATCATGGCTTAATAATTTCCTTTT
rJMSF010K08+ CCAATTTATGAACTCCTTTGTGCCACATATATTCTAATCATGGCTTAATAATTTCCTTTT
                      ____________________________________________________________
consensus CCAATTTATGAACTCCTTTGTGCCACATATATTCTAATCATGGCTTAATAATTTCCTTTT
 
. : . : . : . : . : . :
rJMSF052J20+ TTGTCAAGTAGAGGTTCTT
rJMSF003F24+ TNGTCAAGTAGAGGTTCTT
rJMSF010K08+ TTGTCAAGTAGAGGTTCTTTAGAAAAAACCATACTTTCCATTAATAGTGTTTTTTGCTAC
                      ____________________________________________________________
consensus TTGTCAAGTAGAGGTTCTTTAGAAAAAACCATACTTTCCATTAATAGTGTTTTTTGCTAC