| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011L19 | Sequence | 740 | 004199 (6) | gb|KJB54835.1| | 2e-101 | hypothetical protein B456_009G051100 [Gossypium raimondii] | |||||
| JMFF011L20 | Sequence | 747 | 004199 (6) | emb|CDP16167.1| | 6e-98 | unnamed protein product [Coffea canephora] | |||||
| JMFF011M19 | Sequence | 466 | 004530 (4) | ref|XP_009595011.1| | 1e-44 | PREDICTED: eukaryotic translation initiation factor 3 subunit L {ECO:0000255|HA | 745 | 004199 (6) | gb|KJB54835.1| | 4e-80 | hypothetical protein B456_009G051100 [Gossypium raimondii] |
| JMFF018B01 | Sequence | 567 | 004530 (4) | ref|XP_009595011.1| | 4e-71 | PREDICTED: eukaryotic translation initiation factor 3 subunit L {ECO:0000255|HA | 705 | 004199 (6) | gb|KJB54835.1| | 2e-104 | hypothetical protein B456_009G051100 [Gossypium raimondii] |
| JMSF009E04 | Sequence | 384 | 004530 (4) | ref|XP_009595011.1| | 3e-63 | PREDICTED: eukaryotic translation initiation factor 3 subunit L {ECO:0000255|HA | 818 | 004199 (6) | emb|CDP16167.1| | 2e-128 | unnamed protein product [Coffea canephora] |
| JMSF027M06 | Sequence | 626 | 004530 (4) | ref|XP_009595011.1| | 2e-96 | PREDICTED: eukaryotic translation initiation factor 3 subunit L {ECO:0000255|HA | 754 | 004199 (6) | emb|CDP16167.1| | 1e-123 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF027M06+ ATGAGCAGATGTATGCCTT
rJMSF009E04+ GTATGAGCAGATACTAAAGAAGAATGAGCAGATGTATGCCTT
____________________________________________________________
consensus GTATGAGCAGATACTAAAGAAGAATGAGCAGATGTATGCCTT
. : . : . : . : . : . :
rJMSF027M06+ ACTAGCAGTCAGTTTGTGTCTGTGCCCTCAAGTGAAGCTTGTTGAGGAGACTGT-CAACT
rJMFF011L20+ TCAAGTGAAGCTTGTTGAGGAGACTGT-CCACT
rJMFF011L19+ CAAGTGAAGCNTGTTGAGGAGACTGTCCAACT
rJMFF011M19+ TCAAGTGAAGCTTGTTGAGGAGACTGT-CAACT
rJMSF009E04+ ACTAGCAGTCAGTTTGTGTCTGTGCCCTCAAGTGAAGCTTGGTGAGGAGACTGT-CAACT
____________________________________________________________
consensus ACTAGCAGTCAGTTTGTGTCTGTGCCCTCAAGTGAAGCTTGTTGAGGAGACTGT-CAACT
. : . : . : . : . : . :
rJMSF027M06+ CTCAATTAAGGGAGAAATAT-GGTGACAAGATGTTGAAGATGCAAAGATATGATGATGAG
rJMFF011L20+ CTCAATTAAGGGAGAAATATGGGTGACAAGATGTTGAAGATGCAAAGATATGATGATGAG
rJMFF018B01+ ATTAAGGGAGAAATAT-GGTGACAAGATGTTGAAGATGCAAAGATATGATGATGAG
rJMFF011L19+ CTCAATTAAGGGAGAAATAT-GGTGNCAAGATGTTGAAGATGCAAAGATATGATGATGAG
rJMFF011M19+ CTCAATTAAGGGAGAAATAT-GGTGACAAGATGTTGAAGATGCAAAGATATGATGATGAG
rJMSF009E04+ CTCAATTAAGGGAGAAATAT-GGTGACAAGATGTTGAAGATGCAAAGATATGATGATGAG
____________________________________________________________
consensus CTCAATTAAGGGAGAAATAT-GGTGACAAGATGTTGAAGATGCAAAGATATGATGATGAG
. : . : . : . : . : . :
rJMSF027M06+ TCATTTACTCT-CTATGATGAACTCTTCTCATATGCATGCC-CTAAATTTATTACTCCGT
rJMFF011L20+ TCATTTACTCT-CTATGATGAACTCTTCTCATATGCATGCC-NTAAATTTATTACTCCGT
rJMFF018B01+ TCATTTACTCT-CTATGATGAACTCTTCTCATATGCATGCC-CTAAATTTATTACTCCGT
rJMFF011L19+ TCATTTACTCT-CTATGATGAACTCTTCTCATATGCATGCC-CTAAATTTATTACTCCGT
rJMFF011M19+ TCATTTACTCTCCTATGATGAACTCTTCTCATATGCATGCCNCTAAATTTATTACTCCGT
rJMSF009E04+ TCATTTACTCT-CTATGATGAACTCTTCTCATATGCATGCC-CTAAATTTATTACTCCGT
____________________________________________________________
consensus TCATTTACTCT-CTATGATGAACTCTTCTCATATGCATGCC-CTAAATTTATTACTCCGT
. : . : . : . : . : . :
rJMSF027M06+ CTGCCCCAAGTTTTGAGGAGCCGCTTGTAAATTACAACCAGGATGCTTATAGGCTGCAGT
rJMFF011L20+ CTGCCCCAAGTTTTGAGGAGCCGCTTGTAAATTACAACCAGGATGCTTATAGGCTGCAGT
rJMFF018B01+ CTGCCCCAAGTTTTGAGGAGCCGCTTGTAAATTACAACCAGGATGCTTATAGGCTGCAGT
rJMFF011L19+ CTGCCCCAAGTTTTGAGGAGCCGCTTGTAAATTACAACCAGGATGCTTATAGGCTGCAGT
rJMFF011M19+ CTGCCCCAAGTTTTGAGGAGCCGCTTGTAAATTACAACCAGGATGCTTATAGGCTGCAGT
rJMSF009E04+ CTGCCCCAAGTTTTGAGGAGCCGCTTGTAAATTACAACCAGGATGCTTATAGGCTGCAGT
____________________________________________________________
consensus CTGCCCCAAGTTTTGAGGAGCCGCTTGTAAATTACAACCAGGATGCTTATAGGCTGCAGT
. : . : . : . : . : . :
rJMSF027M06+ TGAAGTTGTTCCTTTATGAAGTGAAGCAGCAACAATTATTATCTGGTGTTAGGACCTACT
rJMFF011L20+ TGAAGTTGTTCCTTTATGAAGTGAAGCAGCAACAATTATTATCTGGTGTTAGGACCTACT
rJMFF018B01+ TGAAGTTGTTCCTTTATGAAGTGAAGCAGCAACAATTATTATCTGGTGTTAGGACCTACT
rJMFF011L19+ TGAAGTTGTTCCTTTATGAAGTGAAGCAGCAACAATTATTATCTGGTGTTAGGACCTACT
rJMFF011M19+ TGAAGTTGTTCCTTTATGAAGTGAAGCAGCAACAATTATTATCTGGTGTTAGGACCTACT
rJMSF009E04+ TGAAGTTGTTCCTTTATGAAGTGAAGCAGCAACAATTATTATCTGGTGTTAGGACCTACT
____________________________________________________________
consensus TGAAGTTGTTCCTTTATGAAGTGAAGCAGCAACAATTATTATCTGGTGTTAGGACCTACT
. : . : . : . : . : . :
rJMSF027M06+ TGAAAGTGTATTCAACTATTTCCCTGGGAAAACTTGCAAATTACTTGCAAGTGGATGAAC
rJMFF011L20+ TGAAAGTGTATTCAACTATTTCCCTGGGAAAACTTGCAAATTACTTGCAAGTGGATGAAC
rJMFF018B01+ TGAAAGTGTATTCAACTATTTCCCTGGGAAAACTTGCAAATTACTTGCAAGTGGATGAAC
rJMFF011L19+ TGAAAGTGTATTCAACTATTTCCCTGGGAAAACTTGCAAATTACTTGCAAGTGGATGAAC
rJMFF011M19+ TGAAAGTGTATTCAACTATTTCCCTGGGAAAACTTGCAAATTACTTGCAAGTGGATGAAC
rJMSF009E04+ TGAAAGTGTATTCAACTATTTCCCTGGGAAAACTTGCAAATTACTTGCAAGTGGATGAAC
____________________________________________________________
consensus TGAAAGTGTATTCAACTATTTCCCTGGGAAAACTTGCAAATTACTTGCAAGTGGATGAAC
. : . : . : . : . : . :
rJMSF027M06+ CTACTTTGAGGACGATTCTGATGACATACAAACACAAGACACATTCTGTTGATTCCGATG
rJMFF011L20+ CTACTTTGAGGACGATTCTGATGACATACAAACACAAGACACATTCTGTTGATTCCGATG
rJMFF018B01+ CTACTTTGAGGACGATTCTGATGACATACAAACACAAGACACATTCTGTTGATTCCGATG
rJMFF011L19+ CTACTTTGAGGACGATTCTGATGACATACAAACACAAGACACATTCTGTTGATTCCGATG
rJMFF011M19+ CTACTTTGAGGACGATTCTGATGACATACAAACACAAGACACATTCTGTTGATTCCGATG
rJMSF009E04+ CTACTTTGAGGACGATTCTGATGACATACAAACACAAGACACATTCTGTTGATTCCGATG
____________________________________________________________
consensus CTACTTTGAGGACGATTCTGATGACATACAAACACAAGACACATTCTGTTGATTCCGATG
. : . : . : . : . : . :
rJMSF027M06+ GAAAAATATTCTCCAATGCCGATGTGGATTTCTTTATCGATGATGAAATGATTCATGTTG
rJMFF011L20+ GAAAAATATTCTCCAATGCCGATGTGGATTTCTTTATCGATGATGAAATGATTCATGTTG
rJMFF018B01+ GAAAAATATTCTCCAATGCCGATGTGGATTTCTTTATCGATGATGAAATGATTCATGTTG
rJMFF011L19+ GAAAAATATTCTCCAATGCCGATGTGGATTTCTTTATCGATGATGAAATGATTCATGTTG
rJMFF011M19+ GAAAAATATTCTCCAATGCCGATGTGGATTTCTTTATCGATGATGAAATGATTCATGTTG
rJMSF009E04+ GAAAAATATTCTCCAATGCCGATGTGGATTTCTTTATCGATGATGAAATGATTCATGTTG
____________________________________________________________
consensus GAAAAATATTCTCCAATGCCGATGTGGATTTCTTTATCGATGATGAAATGATTCATGTTG
. : . : . : . : . : . :
rJMSF027M06+ TAGAATCCAAACCATCTAAGCGATATGGTGATTACTTTCTGCGTCAAATAGTCAAGCTTG
rJMFF011L20+ TAGAATCCAAACCATCTAAGCGATATGGTGATTACTTTCTGCGTCAAATAGTCAAGCTTG
rJMFF018B01+ TAGAATCCAAACCATCTAAGCGATATGGTGATTACTTTCTGCGTCAAATAGTCAAGCTTG
rJMFF011L19+ TAGAATCCAAACCATCTAAGCGATATGGTGATTACTTTCTGCGTCAAATAGTCAAGCTTG
rJMFF011M19+ TAGAATCCAAACCATCTAAGCGATATGGTGATTACTTTCTGCGTCAAATAGTCAAGCTTG
rJMSF009E04+ TAGAATCCAAACCATCTAAGCGATATGGTGATTACTTTCTGCGTCAAATAGTCAAGCTTG
____________________________________________________________
consensus TAGAATCCAAACCATCTAAGCGATATGGTGATTACTTTCTGCGTCAAATAGTCAAGCTTG
. : . : . : . : . : . :
rJMSF027M06+ AAGGTGTGATGACTGACGTTGATAGGATAAAGCTGGAGTAATATACTTGGGGTCTTTACC
rJMFF011L20+ GAGGTGTGATGACTGACGTTGATAGGATAAAGCTGGAGTAATATACTTGGGGTCTTTACC
rJMFF018B01+ AAGGTGTGATGACTGACGTTGATAGGATAAAGCTGGAGTAATATACTTGGGGTCTTTACC
rJMFF011L19+ GAGGTGTGATGACTGACGTTGATAGGATAAAGCTGGAGTAATATACTTGGGGTCTTTACC
rJMFF011M19+ GAGGTGTGATGACTGACGTTGATAGGATAAAGCTGGAGTAATATACTTGGGGTCTTTACC
rJMSF009E04+ AAGGTGTGATGACTGACGTTGATAGGATAAAGCTGGAGTAATATACTTGGGGTCTTTACC
____________________________________________________________
consensus GAGGTGTGATGACTGACGTTGATAGGATAAAGCTGGAGTAATATACTTGGGGTCTTTACC
. : . : . : . : . : . :
rJMSF027M06+ CCTCTGCACTAGAGCATTTTTGTTTTGACTCATTCACGAAGTAGAGTTGGAGCCTTGTTT
rJMFF011L20+ CCTCTGCACTAGAGCATTTTTGTTTTGACTCATTCACGAAGTAGAGTTGGAGCCTTGTTT
rJMFF018B01+ CCTCTGCACTAGAGCATTTTTGTTTTGACTCATTCACGAAGTAGAGTTGGAGCCTTGTTT
rJMFF011L19+ CCTCTGCACTAGAGCATTTTTGTTTTGACTCATTCACGAAGTAGAGTTGGAGCCTTGTTT
rJMFF011M19+ CCTCTGCACTAGAGCATTTTTGTTTTGACTCATTCACGAAGTAGAGTTGGAGCCTTGTTT
rJMSF009E04+ CCTCTGCACTAGAGCATTTTTGTTTTGACTCATTCACGAAGTAGAGTTGGAGCCTTGTTT
____________________________________________________________
consensus CCTCTGCACTAGAGCATTTTTGTTTTGACTCATTCACGAAGTAGAGTTGGAGCCTTGTTT
. : . : . : . : . : . :
rJMSF027M06+ CTAAAACTCAAAGAAAAATCCAAAGTTGGGATTGAACGTAGAGTGGTTCGTCCAGTAGTA
rJMFF011L20+ CTAAAACTCAAAGAAAAATCCAAAGTTGGGATTGAACGTAGAGTGGTTCGTCCAGTAGTA
rJMFF018B01+ CTAAAACTCAAAGAAAAATCCAAAGTTGGGATTGAACGTAGAGTGGTTCGTCCAGTAGTA
rJMFF011L19+ CTAAAACTCAAAGAAAAATCCAAAGTTGGGATTGAACGTAGAGTGGTTCGTCCAGTAGTA
rJMFF011M19+ CTAAAACTCAAAGAAAAATCCAAAGTTGGGATTGAACGTAGAGTGGTTCGTCCAGTAGTA
rJMSF009E04+ CTAAAACTCAAAGAAAAATCCAAAGTTGGGATTGAACGTAGAGTGGTTCGTCCAGTAGTA
____________________________________________________________
consensus CTAAAACTCAAAGAAAAATCCAAAGTTGGGATTGAACGTAGAGTGGTTCGTCCAGTAGTA
. : . : . : . : . : . :
rJMSF027M06+ GCGCTTCCCAT
rJMFF011L20+ GCGCTTCCCATTGTCATTCTCTTCATAAATGATATACTTGATTATATTTAT
rJMFF018B01+ GCGCTTCCCATTGTCATTCTCTTCATAAATGATATACTTGATTATATTTAT
rJMFF011L19+ GCGCTTCCCATTGTCATTCTCTTCATAAATGATATACTTGATTATATTTAT
rJMFF011M19+ GCGCTTCCCATTGTCATTCTCTTCATAAATGATATACTTGATTATATTTAT
rJMSF009E04+ GCGCTTCCCATTGTCATTCTCTTCATAAATGATATACTTGATTATATTTATCTGTATCAA
____________________________________________________________
consensus GCGCTTCCCATTGTCATTCTCTTCATAAATGATATACTTGATTATATTTATCTGTATCAA