Contig 004189:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005L14Sequence454012817 (38)emb|CBI23573.3|5e-80unnamed protein product [Vitis vinifera]270004189 (3)
JMSF005N16Sequence206000612 (2)emb|CDP15866.1|7e-20unnamed protein product [Coffea canephora]341004189 (3)ref|XP_010260322.1|8e-04PREDICTED: DDB1- and CUL4-associated factor 13 [Nelumbo nucifera]
JMSF007K02Sequence476000612 (2)ref|XP_004168344.1|2e-79PREDICTED: DDB1- and CUL4-associated factor 13-like, partial [Cucumis sativus]827004189 (3)ref|XP_002276985.1|3e-94PREDICTED: DDB1- and CUL4-associated factor 13 [Vitis vinifera] emb|CBI21898.3|

Alignment

This contig is upended


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rJMSF007K02+                   GCAAATGNGGATGTNACTGCTACAGCTATGATGCTAGAAAANTAATGAAGC
                      ____________________________________________________________
consensus                      GCAAATGNGGATGTNACTGCTACAGCTATGATGCTAGAAAANTAATGAAGC
 
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rJMSF007K02+          TAAATGTGNTCACAGGATCATGTTTCCGCAGTGATGGATATAGACTATTCACCAACTGGT
                      ____________________________________________________________
consensus             TAAATGTGNTCACAGGATCATGTTTCCGCAGTGATGGATATAGACTATTCACCAACTGGT
 
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rJMSF007K02+          CGTGAATTCGTTACTGGATCTTACGATAGAACAGTGAGAATATTCCATTATAATGGTGGT
                      ____________________________________________________________
consensus             CGTGAATTCGTTACTGGATCTTACGATAGAACAGTGAGAATATTCCATTATAATGGTGGT
 
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rJMSF007K02+          CACAGTAGGGAAATCTATCATACAAAGAGGATGCAAAGGGTGTTCTGTGTGAAGTTCAGT
                      ____________________________________________________________
consensus             CACAGTAGGGAAATCTATCATACAAAGAGGATGCAAAGGGTGTTCTGTGTGAAGTTCAGT
 
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rJMSF007K02+          TGCGATGCAAGTTACCTTATCTCAGGAAGTGATGATACCAACCTTCGTTTATGGAAAGCT
                      ____________________________________________________________
consensus             TGCGATGCAAGTTACCTTATCTCAGGAAGTGATGATACCAACCTTCGTTTATGGAAAGCT
 
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rJMSF007K02+          AAAGCATCTGAGCAAATGGGAGTGCTTTTGCCCAGAGAACTTAGAAAGCATGAATATCAC
                      ____________________________________________________________
consensus             AAAGCATCTGAGCAAATGGGAGTGCTTTTGCCCAGAGAACTTAGAAAGCATGAATATCAC
 
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rJMSF007K02+          GTGGCTCTCAAGAATCGTTTCAAGCATCTTCCTGGAATCAAACGCATTGACAGACATCGT
                      ____________________________________________________________
consensus             GTGGCTCTCAAGAATCGTTTCAAGCATCTTCCTGGAATCAAACGCATTGACAGACATCGT
 
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rJMSF007K02+          CACTTGCCCAAGGCAATATACAAGGCTTCTAATCTGAGACGGGAGATGACTGAATCAGAA
                      ____________________________________________________________
consensus             CACTTGCCCAAGGCAATATACAAGGCTTCTAATCTGAGACGGGAGATGACTGAATCAGAA
 
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rJMSF005N16+                      GCTAGAAAGAGAGCTCACAGCAGACCAGGCAGCATGCCAAACGAGCCA
rJMSF007K02+          AGGAAGAAGGAAGCTAGAAAGAGAGCTCACAGCAGACCAGGCAGCATGCCAAACGAGCCA
                      ____________________________________________________________
consensus             AGGAAGAAGGAAGCTAGAAAGAGAGCTCACAGCAGACCAGGCAGCATGCCAAACGAGCCA
 
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rJMSF005N16+          TTACGTAAGAAAAGAATCATTCAAGAAGTTGAATGAGTGGCTGCTTCATCCTCCCTTACA
rJMSF005L14+                                                    GCTTCATCCTCCCTGACA
rJMSF007K02+          TTACGTAAGAAAAGAATCATTCAAGAAGTTGAATGAGTGGCTGCTTCATCCTCCCTTACA
                      ____________________________________________________________
consensus             TTACGTAAGAAAAGAATCATTCAAGAAGTTGAATGAGTGGCTGCTTCATCCTCCCTTACA
 
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rJMSF005N16+          CAGTATTCTTTCACTCCTA-CCCTCGGGATAAAACCCAGAACTGAACCCATCAAGA-ACA
rJMSF005L14+          CAGTACTCNTTCACTCCTACCCCTCGGGATAAAACCCAGAACTGNACCCATCAAGACACN
rJMSF007K02+          CAGTATTCTTTCACTCCTA-CCCTCGGGATAAAACCCAGAACTGAACCCATCAAGA-ACA
                      ____________________________________________________________
consensus             CAGTATTCTTTCACTCCTA-CCCTCGGGATAAAACCCAGAACTGAACCCATCAAGA-ACA
 
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rJMSF005N16+          TCTATTTTAGGGAGCTTAGAATCTATTTNGACAATCT--TTGTTTTATAATTACATGTAA
rJMSF005L14+          TNTATTTTAGGGAGCTTAGAATCTATTTCGACAATCTCCTGTTNTTATAATTACATGTAA
rJMSF007K02+          TCTATTTTAGGGAGCTTAGAATCTATTTCGACAATCT--TTGTTTTATAATTACATGTAA
                      ____________________________________________________________
consensus             TCTATTTTAGGGAGCTTAGAATCTATTTCGACAATCT--TTGTTTTATAATTACATGTAA
 
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rJMSF005N16+          AGGAACCAACACTCCTGCTTTAGCTTTAGATCTTTTGGTCTGGTTAAGATGATTGGTTTA
rJMSF005L14+          AGGAACCAACACTCCTGCTTTAGCTTTAGATCTTCTGGTCTGGTTAAGATGATTGGTNTA
rJMSF007K02+          AGGAACCAACACTCCTGCTTTAGCTTTAGATCTTTTGGTCTGGTTAAGATGATTGGTTTA
                      ____________________________________________________________
consensus             AGGAACCAACACTCCTGCTTTAGCTTTAGATCTTTTGGTCTGGTTAAGATGATTGGTTTA
 
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rJMSF005N16+          GATATAATATCAAACCAAACACAAA-CAGTTAACAATTT                     
rJMSF005L14+          GATATAATATCAAACCAAACACAAA-CAGTTAACAATTT                     
rJMSF007K02+          GATATAATATCAAACCAAACACAAACCAGTTAACAATTTTGAACTCTTCCACCCAATATT
                      ____________________________________________________________
consensus             GATATAATATCAAACCAAACACAAA-CAGTTAACAATTTTGAACTCTTCCACCCAATATT