Contig 004180:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003F14Sequence389013210 (3)ref|XP_006346999.1|6e-14PREDICTED: ATPase family AAA domain-containing protein 3-B-like [Solanum tubero763004180 (3)ref|XP_004233520.1|5e-88PREDICTED: ATPase family AAA domain-containing protein 3C [Solanum lycopersicum
JMSF017O20Sequence243013210 (3)781004180 (3)ref|XP_004233520.1|1e-104PREDICTED: ATPase family AAA domain-containing protein 3C [Solanum lycopersicum
JMSF025G21Sequence678013210 (3)ref|XP_006346999.1|7e-81PREDICTED: ATPase family AAA domain-containing protein 3-B-like [Solanum tubero749004180 (3)ref|XP_004233520.1|2e-96PREDICTED: ATPase family AAA domain-containing protein 3C [Solanum lycopersicum

Alignment

This contig is upended


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rJMSF025G21+                                                       TCCAAGAAGGGCTTA
rJMSF017O20+                        AATTCATGAGATTTTTGACTGGGCCAAAAAATCCAAGAAGGGCTTA
                      ____________________________________________________________
consensus                           AATTCATGAGATTTTTGACTGGGCCAAAAAATCCAAGAAGGGCTTA
 
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rJMSF025G21+          TTGCTTTTCATTGACGAGGCTGATGCCTTCTTATGCGAGCGAAACAGCATACACATGAGT
rJMSF017O20+          TTGCTTTTCATTGACGAGGCTGATGCCTTCTTATGCGAGCGAAACAGCATACACATGAGT
rJMSF003F14+                           GGCTGATGCCTTTTTATGCGAGCGAAACAGCATACACATGAGT
                      ____________________________________________________________
consensus             TTGCTTTTCATTGACGAGGCTGATGCCTTCTTATGCGAGCGAAACAGCATACACATGAGT
 
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rJMSF025G21+          GAAGCTCAGCGGAGTGCTTTAAACGCTATGCTCTTTCGAACAGGAGACCAGTCCCGGGAT
rJMSF017O20+          GAAGCTCAGCGGAGTGCTTTAAACGCTATGCTCTTTCGAACAGGAGACCAGTCCCGGGAT
rJMSF003F14+          GAAGCTCAGCGGAGTGCTTTAAACGCTATGCTCTTTCGAACAGGAGACCAGTCCCGGGAT
                      ____________________________________________________________
consensus             GAAGCTCAGCGGAGTGCTTTAAACGCTATGCTCTTTCGAACAGGAGACCAGTCCCGGGAT
 
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rJMSF025G21+          GTGGTTCTTGTCCTCGCAACCAACAGGCCAGGGGATCTTGACAGTGCCATCACCGACCGC
rJMSF017O20+          GTGGTTCTTGTCCTCGCAACCAACAGGCCAGGGGATCTTGACAGTGCCATCACCGACCGC
rJMSF003F14+          GTGGTTCTTGTCCTCGCAACCAACAGGCCAGGGGATCTTGACAGTGCCATCACCGACCGC
                      ____________________________________________________________
consensus             GTGGTTCTTGTCCTCGCAACCAACAGGCCAGGGGATCTTGACAGTGCCATCACCGACCGC
 
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rJMSF025G21+          ATAGATGAAGTCATTGAATTCCCTCTTCCCCAGGAGGAAGAGCGTTTCAAATTGCTGAAG
rJMSF017O20+          ATAGATGAAGTCATTGAATTCCCTCTTCCCCAGGAGGAAGAGCGTTTCAAATTGCTGAAG
rJMSF003F14+          ATAGATGAAGTCATTGAATTCCCTCTTCCCCAGGAGGAAGAGCGTTTCAAATTGCTGAAG
                      ____________________________________________________________
consensus             ATAGATGAAGTCATTGAATTCCCTCTTCCCCAGGAGGAAGAGCGTTTCAAATTGCTGAAG
 
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rJMSF025G21+          CTGTATCTGAACAAATACCTCTCCGGCGAAGAAGGCAGCAACGACTCCAAGTGGGGAGGA
rJMSF017O20+          CTGTATCTGAACAAATACCTCTCCGGCGAAGAAGGCAGCAACGACTCCAAGTGGGGAGGA
rJMSF003F14+          CTGTATCTGAACAAATACCTCTCCGGCGAAGAAGGCAGCAACGACTCCAAGTGGGGAGGA
                      ____________________________________________________________
consensus             CTGTATCTGAACAAATACCTCTCCGGCGAAGAAGGCAGCAACGACTCCAAGTGGGGAGGA
 
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rJMSF025G21+          GGTTTGTTTAATAAGCAACCACAAAAAATCACAGTAAAAGACATATCCGATGATATAATC
rJMSF017O20+          GGTTTGTTTAATAAGCAACCACAAAAAATCACAGTAAAAGACATATCCGATGATATAATC
rJMSF003F14+          GGTTTGTTTAATAAGCAACCACAAAAAATCACAGTAAAAGACATATCCGATGATATAATC
                      ____________________________________________________________
consensus             GGTTTGTTTAATAAGCAACCACAAAAAATCACAGTAAAAGACATATCCGATGATATAATC
 
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rJMSF025G21+          AGAGAGGCTGCTCGGAGGACGGAGGGGTTTTCCGGCCGAGAGATCGCCAAACTCATGGCT
rJMSF017O20+          AGAGAGGCTGCTCGGAGGACGGAGGGGTTTTCCGGCCGAGAGATCGCCAAACTCATGGCT
rJMSF003F14+          AGAGAGGCTGCTCGGAGGACGGAGGGGTTTTCCGGCCGAGAGATCGCCAAACTCATGGCT
                      ____________________________________________________________
consensus             AGAGAGGCTGCTCGGAGGACGGAGGGGTTTTCCGGCCGAGAGATCGCCAAACTCATGGCT
 
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rJMSF025G21+          AGCGTGCAGGCGGCCGTTTACGGCAGCCCTGATTGCGTCCTGCATCCCCAGCTCTTCAAG
rJMSF017O20+          AGCGTGCAGGCGGCCGTTTACGGCAGCCCTGATTGCGTCCTGCATCCCCAGCTCTTCAAG
rJMSF003F14+          AGCGTGCAGGCGGCCGTTTACGGCAGCCCTGATTGCGTCCTGCATCCCCAGCTCTTCAAG
                      ____________________________________________________________
consensus             AGCGTGCAGGCGGCCGTTTACGGCAGCCCTGATTGCGTCCTGCATCCCCAGCTCTTCAAG
 
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rJMSF025G21+          GAGATTGTGGACTACAAAGTTGCAGAGCATCAGCAGCGCATTCAACTTGCAGCTGAAGGT
rJMSF017O20+          GAGATTGTGGACTACAAAGTTGCAGAGCATCAGCAGCGCATTCAACTTGCAGCTGAAGGT
rJMSF003F14+          GAGATTGTGGACTACAAAGTTGCAGAGCATCAGCAGCGCATTCAACTTGCAGCTGAAGGT
                      ____________________________________________________________
consensus             GAGATTGTGGACTACAAAGTTGCAGAGCATCAGCAGCGCATTCAACTTGCAGCTGAAGGT
 
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rJMSF025G21+          GGAGAGCCTGCTTTCTGCACCAATTAGCTGCCAAATTTTTTATCAAACTATAGAGATCTC
rJMSF017O20+          GGAGAGCCTGCTTTCTGCACCAATTAGCTGCCAAATTTTTTATCAAACTATAGAGATCTC
rJMSF003F14+          GGAGAGCCTGCTTTCTGCACCAATTAGCTGCCAAATTTTTTATCAAACTATAGAGATCTC
                      ____________________________________________________________
consensus             GGAGAGCCTGCTTTCTGCACCAATTAGCTGCCAAATTTTTTATCAAACTATAGAGATCTC
 
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rJMSF025G21+          TTGCAGAGTTATTCTTATCATCTCATCAGGCATAACTATGTAAAAGTAGAATCCAAAGTA
rJMSF017O20+          TTGCAGAGTTATTCTTATCATCTCATCAGGCATAACTATGTAAAAGTAGAATCCAAAGTA
rJMSF003F14+          TTGCAGAGTTATTCTTATCATCTCATCAGGCATAACTATGTAAAAGTAGAATCCAAAGTA
                      ____________________________________________________________
consensus             TTGCAGAGTTATTCTTATCATCTCATCAGGCATAACTATGTAAAAGTAGAATCCAAAGTA
 
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rJMSF025G21+          CATTACTCGATACTTCATGTGAGTATATACTTTTAGGATTCAAAACGTTTCAGTTTTGTG
rJMSF017O20+          CATTACTCGATACTTCATGTGAGTATATACTTTTAGGATTCAAAACGTTTCAGTTTTGTG
rJMSF003F14+          CATTACTCGATACTTCATGTGAGTATATACTTTTAGGATTCAAAACGTTTCAGTTTTGTG
                      ____________________________________________________________
consensus             CATTACTCGATACTTCATGTGAGTATATACTTTTAGGATTCAAAACGTTTCAGTTTTGTG
 
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rJMSF025G21+          TT                                                          
rJMSF017O20+          TT                                                          
rJMSF003F14+          TTTGAAACCCTATATTGTATACATTTTATTAGTAATAATAACTGCACGATTTGAATTCTT
                      ____________________________________________________________
consensus             TTTGAAACCCTATATTGTATACATTTTATTAGTAATAATAACTGCACGATTTGAATTCTT