Contig 004179:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF002H23-                                                     GTGAAGAGGAATGGGAGT
                      ____________________________________________________________
consensus                                                       GTGAAGAGGAATGGGAGT
 
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JMSF002H23-           GGAGGAGCGTTTCATCCGTTCAAGAGAGAGAAGAGCGCCGGAACAAGCAGTCCCGCC-GT
rJMSF002H23+                              CAAGAGAGAGAAGAGCGCCGGAACAAGCAGTCCCGCCNGT
                      ____________________________________________________________
consensus             GGAGGAGCGTTTCATCCGTTCAAGAGAGAGAAGAGCGCCGGAACAAGCAGTCCCGCCNGT
 
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JMSF002H23-           GCAAACGCTAGACAGTACGACGGCCGGCGTGGGTAACGGCAGCGGAGGTGGCGGCGGTGG
rJMSF002H23+          GCAAACGCTAGACAGTACGACGGCCGGCGTGGGTAACGGCAGCGGAGGTGGCGGCGGTGG
                      ____________________________________________________________
consensus             GCAAACGCTAGACAGTACGACGGCCGGCGTGGGTAACGGCAGCGGAGGTGGCGGCGGTGG
 
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JMSF002H23-           AAGTAAGAAGGAAGAAAAGGAAACACAGTCCCAGAGAAAGCAAAGGCGGTGCTGGTCGCC
rJMSF002H23+          AAGTAAGAAGGAAGAAAAGGAAACACAGTCCCAGAGAAAGCAAAGGCGGTGCTGGTCGCC
                      ____________________________________________________________
consensus             AAGTAAGAAGGAAGAAAAGGAAACACAGTCCCAGAGAAAGCAAAGGCGGTGCTGGTCGCC
 
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JMSF002H23-           GGAGTTGCATAGAAGGTTCTTGCAAGCCCTCCAACAACTCGGCGGTTCACATGTTGCCAC
rJMSF002H23+          GGAGTTGCATAGAAGGTTCTTGCAAGCCCTCCAACAACTNGGCGGTTCACATGTTGCCAC
                      ____________________________________________________________
consensus             GGAGTTGCATAGAAGGTTCTTGCAAGCCCTCCAACAACTCGGCGGTTCACATGTTGCCAC
 
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JMSF002H23-           GCCNAAACAGATC                                               
rJMSF002H23+          GCCAAAACAGATCAGGGAATTAATGAAGGTGGATGGTNTTACAAATGATGAAGTTAAGAG
                      ____________________________________________________________
consensus             GCCAAAACAGATCAGGGAATTAATGAAGGTGGATGGTNTTACAAATGATGAAGTTAAGAG
 
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rJMSF002H23+          CCACTTGCAGAAATATNGGCTACATACTAGAAGACCAACTCCGTCCATTNGTAACAACGG
                      ____________________________________________________________
consensus             CCACTTGCAGAAATATNGGCTACATACTAGAAGACCAACTCCGTCCATTNGTAACAACGG
 
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rJMSF002H23+          TAGCCAGCAGCAAGGACCACAATTTGTTGTGGTGGGGGGAATTTGGGTGCCGCCACCGGA
                      ____________________________________________________________
consensus             TAGCCAGCAGCAAGGACCACAATTTGTTGTGGTGGGGGGAATTTGGGTGCCGCCACCGGA
 
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rJMSF002H23+          ATATGCAGCAGCGATGGCACCTCCGCCGACGTCCGGTGAAGCTGCCACTTCAAATGGAAT
                      ____________________________________________________________
consensus             ATATGCAGCAGCGATGGCACCTCCGCCGACGTCCGGTGAAGCTGCCACTTCAAATGGAAT
 
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rJMSF002H23+          ATACGCGCCGGTCGCCACCACACCAAAACAAACTCAACAAAATAGAACAATTCCATTCTC
                      ____________________________________________________________
consensus             ATACGCGCCGGTCGCCACCACACCAAAACAAACTCAACAAAATAGAACAATTCCATTCTC
 
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rJMSF002H23+          CGGTGAGAAAGGCGGAGCACGGCGTTTTGACTCACCCTCCACCTNTTACTCAACGCACAC
                      ____________________________________________________________
consensus             CGGTGAGAAAGGCGGAGCACGGCGTTTTGACTCACCCTCCACCTNTTACTCAACGCACAC
 
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rJMSF002H23+          CACCACCACTTCTCATTCTTCCTAAGACTAATCATTTTTCATTGTACATTTTTTTTTTCG
                      ____________________________________________________________
consensus             CACCACCACTTCTCATTCTTCCTAAGACTAATCATTTTTCATTGTACATTTTTTTTTTCG
 
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rJMSF002H23+          AGTGCACGTGTAAAAGAGTTAACATTTTTGCAATTAATCGTCTGAATCAGCATGTAATAT
                      ____________________________________________________________
consensus             AGTGCACGTGTAAAAGAGTTAACATTTTTGCAATTAATCGTCTGAATCAGCATGTAATAT