Contig 004178:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037M21Sequence542004178 (3)ref|XP_010262299.1|1e-113PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial-like [Nel751004178 (3)gb|AFK36032.1|2e-141unknown [Lotus japonicus]
JMSF002B23Sequence741004178 (3)gb|AFK36032.1|2e-113unknown [Lotus japonicus]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037M21-                                    ATGGTAGCCATCAAACGGGTCATTGACTATGCCGT
                      ____________________________________________________________
consensus                                      ATGGTAGCCATCAAACGGGTCATTGACTATGCCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037M21-           CAAAATTCGAGTCAAACCAGATAAGAGCGGTGTAGAGACCAGCAATGTGAAGATGTCGAT
rJMFF037M21+                                                CCAGCAATGTGAAGATGTCGAT
                      ____________________________________________________________
consensus             CAAAATTCGAGTCAAACCAGATAAGAGCGGTGTAGAGACCAGCAATGTGAAGATGTCGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037M21-           GAACCCATTTTGCGAAATCGCTTTGGAAGAAGCGCTCCGAATTAGGGAAGCGGGCCTGGC
rJMFF037M21+          GAACCCATTTTGCGAAATCGCTTTGGAAGAAGCGCTCCGAATTAGGGAAGCGGGCCTGGC
                      ____________________________________________________________
consensus             GAACCCATTTTGCGAAATCGCTTTGGAAGAAGCGCTCCGAATTAGGGAAGCGGGCCTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037M21-           TACGGAGGTGGTGGCGGTGAGTGTTGGCCCCACCCAGTCTGTGGATACTTTGCGGACTGG
rJMFF037M21+          TACGGAGGTGGTGGCGGTGAGTGTTGGCCCCACCCAGTCTGTGGATACTTTGCGGACTGG
rJMSF002B23+                                                 TGTGGATACTTTGCGGACTGG
                      ____________________________________________________________
consensus             TACGGAGGTGGTGGCGGTGAGTGTTGGCCCCACCCAGTCTGTGGATACTTTGCGGACTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037M21-           GTTAGCCATGGGCGCGGACCGGGCGATTCATGTTGAAGCGCCCGGGTCTCTGTACCCGCT
rJMFF037M21+          GTTAGCCATGGGCGCGGACCGGGCGATTCATGTTGAAGCGCCCGGGTCTCTGTACCCGCT
rJMSF002B23+          GTTAGCCATGGGCGCGGACCGGGCGATTCATGTTGAAGCGCCCGGGTCTCTGTACCCGCT
                      ____________________________________________________________
consensus             GTTAGCCATGGGCGCGGACCGGGCGATTCATGTTGAAGCGCCCGGGTCTCTGTACCCGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037M21-           TTCGATTGCAAAGATCCTGAGAGCTCTTGTTGAAATTGAGAAGCCTGGGCTTCTTCTCCT
rJMFF037M21+          TTCGATTGCAAAGATCCTGAGAGCTCTTGTTGAAATTGAGAAGCCTGGGCTTCTTCTCCT
rJMSF002B23+          TTCGATTGCAAAGATCCTGAGAGCTCTTGTTGAAATTGAGAAGCCTGGGCTTCTTCTCCT
                      ____________________________________________________________
consensus             TTCGATTGCAAAGATCCTGAGAGCTCTTGTTGAAATTGAGAAGCCTGGGCTTCTTCTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037M21-           TGGCAAACAGGCAATTGATGATGATTGCAACCAGACTGGTCAAATGGTTGCGGGGCTTCT
rJMFF037M21+          TGGCAAACAGGCAATTGATGATGATTGCAACCAGACTGGTCAAATGGTTGCGGGGCTTCT
rJMSF002B23+          TGGCAAACAGGCAATTGATGATGATTGCAACCAGACTGGTCAAATGGTTGCGGGGCTTCT
                      ____________________________________________________________
consensus             TGGCAAACAGGCAATTGATGATGATTGCAACCAGACTGGTCAAATGGTTGCGGGGCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037M21-           TCAATGGCCACAAGGGACCTTTGCTTCAAAGGTTGTTCTGGACAAAGAAAAACAAGTGGC
rJMFF037M21+          TCAATGGCCACAAGGGACCTTTGCTTCAAAGGTTGTTNTGGACAAAGAAAAACAAGTGGC
rJMSF002B23+          TCAATGGCCACAAGGGACCTTTGCTTCAAAGGTTGTTCTGGACAAAGAAAAACAAGTGGC
                      ____________________________________________________________
consensus             TCAATGGCCACAAGGGACCTTTGCTTCAAAGGTTGTTCTGGACAAAGAAAAACAAGTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037M21-           AACTGTGGATAGAGAGGTTGATGGTGGTATCGAAACATTGTCTTTGGACCTACCTGCAGT
rJMFF037M21+          AACTGTGGATAGAGAGGTTGATGGTGGTATCGAAACATTGTCTTTGGACCTACCTGCAGT
rJMSF002B23+          AACTGTGGATAGAGAGGTTGATGGTGGTATCGAAACATTGTCTTTGGACCTACCTGCAGT
                      ____________________________________________________________
consensus             AACTGTGGATAGAGAGGTTGATGGTGGTATCGAAACATTGTCTTTGGACCTACCTGCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF037M21-           AATCACCACTGACTTGAGACTGAACCA                                 
rJMFF037M21+          AATCACCACTGACTTGAGACTGAACCAGCCAAGGTACGCAACGCTCCCTAACATAATGAA
rJMSF002B23+          AATCACCACTGACTTGAGACTGAACCAGCCAAGGTACGCAACGCTCCCTAACATAATGAA
                      ____________________________________________________________
consensus             AATCACCACTGACTTGAGACTGAACCAGCCAAGGTACGCAACGCTCCCTAACATAATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037M21+          AGCAAAGTCGAAGCCAATAAAGAAGATGACTCCGCAGGAGCTGAACGTGGAGATCAAATC
rJMSF002B23+          AGCAAAGTCGAAGCCAATAAAGAAGATGACTCCGCAGGAGCTGAACGTGGAGATCAAATC
                      ____________________________________________________________
consensus             AGCAAAGTCGAAGCCAATAAAGAAGATGACTCCGCAGGAGCTGAACGTGGAGATCAAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037M21+          TGATATGGAGATTGTACAAGTTACCGAGCCTCCCAAGAGAAAAGCAGGCGTTATACTCTC
rJMSF002B23+          TGATATGGAGATTGTACAAGTTACCGAGCCTCCCAAGAGAAAAGCAGGCGTTATACTCTC
                      ____________________________________________________________
consensus             TGATATGGAGATTGTACAAGTTACCGAGCCTCCCAAGAGAAAAGCAGGCGTTATACTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037M21+          GTCTGTGGACGAGCTTGTTGACAAGTTGAAGAATGAAGCGCGAGTCATTTGATTGTGTAC
rJMSF002B23+          GTCTGTGGACGAGCTTGTTGACAAGTTGAAGAATGAAGCGCGAGTCATTTGATTGTGTAC
                      ____________________________________________________________
consensus             GTCTGTGGACGAGCTTGTTGACAAGTTGAAGAATGAAGCGCGAGTCATTTGATTGTGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF037M21+          CATGTATGTGGCCTCACTAACATTATCAAATTGTTGTTAAATTTCCAATT          
rJMSF002B23+          CATGTATGTGGCCTCACTAACATTATCAAATTGTTGTTAAATTTCCAATTGTTACATTCC
                      ____________________________________________________________
consensus             CATGTATGTGGCCTCACTAACATTATCAAATTGTTGTTAAATTTCCAATTGTTACATTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002B23+          TAATAAATATGTGAAATTTTAACCAGTCTTCTTCAATTCCCCATTGCACATTGAACACAC
                      ____________________________________________________________
consensus             TAATAAATATGTGAAATTTTAACCAGTCTTCTTCAATTCCCCATTGCACATTGAACACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002B23+          TAGCTTTCATCTCTATTTTCTTCTTTTGATAAGCTATCTCCCAGTGTTAAGGATTTAGGT
                      ____________________________________________________________
consensus             TAGCTTTCATCTCTATTTTCTTCTTTTGATAAGCTATCTCCCAGTGTTAAGGATTTAGGT