Contig 004175:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014I20Sequence551004175 (6)ref|XP_011095434.1|4e-29PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum]
JMFF032O20Sequence572006400 (4)emb|CDP13803.1|5e-100unnamed protein product [Coffea canephora]704004175 (6)ref|XP_011095434.1|4e-54PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum]
JMFF051L14Sequence622006400 (4)emb|CDP13803.1|3e-96unnamed protein product [Coffea canephora]585004175 (6)
JMSF008B24Sequence276006400 (4)emb|CDP13803.1|1e-09unnamed protein product [Coffea canephora]753004175 (6)ref|XP_011095434.1|3e-81PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum]
JMSF009B24Sequence110000842 (2)269004175 (6)ref|XP_011095434.1|2e-09PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum]
JMSF033O05Sequence672006400 (4)emb|CDP13803.1|2e-107unnamed protein product [Coffea canephora]648004175 (6)ref|XP_011095434.1|2e-53PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF008B24+ GAGATGGGGAGTGAACTGT
                      ____________________________________________________________
consensus GAGATGGGGAGTGAACTGT
 
. : . : . : . : . : . :
rJMSF008B24+ CAAAAACAGTTGCGACATTCATTGTGCAAAAGATCCTTCTAGATGATATGGGCCTTGATT
                      ____________________________________________________________
consensus CAAAAACAGTTGCGACATTCATTGTGCAAAAGATCCTTCTAGATGATATGGGCCTTGATT
 
. : . : . : . : . : . :
rJMSF008B24+ ATATATGTACCACAGCGGAGCGGTTCTTTGCCGTAGGCCGGGTGCTGGGAAATATGGTGA
rJMSF033O05+ CCGTAGGCCGGGTGCTGGGAAATATGGTGA
rJMFF032O20+ CCGTAGGCCGGGTGCTGGGAAATATGGTGA
                      ____________________________________________________________
consensus ATATATGTACCACAGCGGAGCGGTTCTTTGCCGTAGGCCGGGTGCTGGGAAATATGGTGA
 
. : . : . : . : . : . :
rJMSF008B24+ CTGCCCTTGCTGAGCAGCCTTCATCTAGATTGCTGAAGCATATAATTCGTTGCTACCTTC
rJMSF033O05+ CTGCCCTTGCTGAGCAGCCTTCATCTAGATTGCTGAAGCATATAATTCGTTGCTACCTTC
rJMFF032O20+ CTGCCCTTGCTGAGCAGCCTTCATNTAGATTGCTGAAGCATATAATTCGTTGCTACCTTC
                      ____________________________________________________________
consensus CTGCCCTTGCTGAGCAGCCTTCATCTAGATTGCTGAAGCATATAATTCGTTGCTACCTTC
 
. : . : . : . : . : . :
rJMSF008B24+ GATTGTCTGATAATCCAAGAGCTTGTGATGCACTTAGAAGTTGTCTACCAGATCTGCTTA
rJMFF014I20+ TGATAATCCAAGAGCTTGTGATGCACTTAGAAGTTGTCTACCAGATCTGCTTA
rJMSF033O05+ GATTGTCTGATAATCCAAGAGCTTGTGATGCACTTAGAAGTTGTCTACCAGATCTGCTTA
rJMFF032O20+ GATTGTCTGATAATCCAAGAGCTTGTGATGCACTTAGAAGTTGTCTACCAGATCTGCTTA
                      ____________________________________________________________
consensus GATTGTCTGATAATCCAAGAGCTTGTGATGCACTTAGAAGTTGTCTACCAGATCTGCTTA
 
. : . : . : . : . : . :
rJMSF008B24+ GGGATGCCACTGCCTTCAGTAGCTGTCTTCGAGAGGACCCGACTACTCGGAGGTGGCTAC
rJMFF014I20+ GGGATGCCACTGCCTTCAGTAGCTGTCTTCGAGAGGACCCGACTACTCGGAGGTGGCTAC
rJMSF009B24+ TCGGAGGTGGNTAC
rJMSF033O05+ GGGATGCCACTGCCTTCAGTAGCTGTCTTCGAGAGGACCCGACTACTCGGAGGTGGCTAC
rJMFF032O20+ GGGATGCCACTGCCTTCAGTAGCTGTCTTCGAGAGGACCCGACTACTCGGAGGTGGCTAC
                      ____________________________________________________________
consensus GGGATGCCACTGCCTTCAGTAGCTGTCTTCGAGAGGACCCGACTACTCGGAGGTGGCTAC
 
. : . : . : . : . : . :
rJMSF008B24+ AACAGTTACTTCACAACGTGCAAATTCCAAGAGTTCCCCTACAAGCAGGGGGAGGATTTG
rJMFF014I20+ AACAGTTACTTCACAACGTGCAAATTCCAAGAGTTCCCNTACAAGCAGGGGGAGGATTTG
rJMSF009B24+ AACAGTTACTTCACAACGTGCAANNTCCAAGAGTTCCCCTACAAGCAGGGGGAGGATTTG
rJMSF033O05+ AACAGTTACTTCACAACGTGCAAATTCCAAGAGTTCCCCTACAAGCAGGGGGAGGATTTG
rJMFF032O20+ AACAGTTACTTCACAACGTGCAAATTCCAAGAGTTCCCCTACAAGCAGGGGGAGGATTTG
rJMFF051L14+ CAACGTGCAAATTCCAAGAGTTCCCCTACAAGCAGGGGGAGGATTTG
                      ____________________________________________________________
consensus AACAGTTACTTCACAACGTGCAAATTCCAAGAGTTCCCCTACAAGCAGGGGGAGGATTTG
 
. : . : . : . : . : . :
rJMSF008B24+ ATCATATGATGGTGAACTAAATTGACAAGATTCTACCTCGTGAATTCAACATCTGTGATT
rJMFF014I20+ ATCATATGATAGTGAACTAAATTGACAAGATTCTACCTCGTGAATTCAACATCTGTGATT
rJMSF009B24+ ATCATATGATGGNGAACTAAATTGACAAGATTCTNCCTNGNGAATTCAACATCTGTGATT
rJMSF033O05+ ATCATATGATGGTGAACTAAATTGACAAGATTCTACCTCGTGAATTCAACATCTGTGATT
rJMFF032O20+ ATCATATGATGGTGAACTAAATTGACAAGATTNTACCTCGTGAATTCAACATCTGTGATT
rJMFF051L14+ ATCATATGATGGTGAACTAAATTGACAAGATTCTACCTCGTGAATTCAACATCTGTGATT
                      ____________________________________________________________
consensus ATCATATGATGGTGAACTAAATTGACAAGATTCTACCTCGTGAATTCAACATCTGTGATT
 
. : . : . : . : . : . :
rJMSF008B24+ GTGAAGTGACTTGATTCCAGAAAACCCGTTGAGTCAATACAATATTTATTCTTTTGTTGC
rJMFF014I20+ GTGAAGTGACTTGATTCCAGAAAACCCGTTGAGTCAATACAATATTTATTCTTTTGTTGC
rJMSF009B24+ GTGAAGTGACNCGANTCCAGAAANCCCGCNGAGTCAANACAATATTTATTCTTTNNNTGC
rJMSF033O05+ GTGAAGTGACTTGATTCCAGAAAACCCGTTGAGTCAATACAATATTTATTCTTTTGTTGC
rJMFF032O20+ GTGAAGTGACTTGATTCCAGAAAACCCGTTGAGTCAATACAATATTTATTCTTTTGTTGC
rJMFF051L14+ GTGAAGTGACTTGATTCCAGAAAACCCGTTGAGTCAATACAATATTTATTCTTTTGTTGC
                      ____________________________________________________________
consensus GTGAAGTGACTTGATTCCAGAAAACCCGTTGAGTCAATACAATATTTATTCTTTTGTTGC
 
. : . : . : . : . : . :
rJMSF008B24+ TTTCGATTGATGATGGAATTGGATAGCCAAGTGTGGAATGTGCAGTGACCTACATGGTGG
rJMFF014I20+ TTTCGATTGATGATGGAATTGGATAGCCAAGTGTGGAATGTGCAGTGACCTACATGGTGG
rJMSF009B24+ NNNCGANNGATGATGGAANTGGATAGCCAAGTGTGGAATGTGCAGTGACTTNCATGGTGG
rJMSF033O05+ TTTCGATTGATGATGGAATTGGATAGCCAAGTGTGGAATGTGCAGTGACCTACATGGTGG
rJMFF032O20+ TTTCGATTGATGATGGAATTGGATAGCCAAGTGTGGAATGTGCAGTGACCTACATGGTGG
rJMFF051L14+ TTTCGATTGATGATGGAATTGGATAGCCAAGTGTGGAATGTGCAGTGACCTACATGGTGG
                      ____________________________________________________________
consensus TTTCGATTGATGATGGAATTGGATAGCCAAGTGTGGAATGTGCAGTGACCTACATGGTGG
 
. : . : . : . : . : . :
rJMSF008B24+ CAGTGTGGAAAAATGTCGGATACTGTAATTAGTAGTCTGATGATCCTGTTGTTATGTGCT
rJMFF014I20+ CAGTGTGGAAAAATGTCGGATACTGTAATTAGTAGTCTGATGATCCTGTTGTTATGTGNT
rJMSF009B24+ CAGTGTGGAAAAA
rJMSF033O05+ CAGTGTGGAAAAATGTCGGATACTGTAATTAGTAGTCTGATGATCCTGTTGTTATGTGCT
rJMFF032O20+ CAGTGTGGAAAAATGTCGGATACTGTAGTTAGTAGTCTGATGATCCTGTTGTTATGTGCT
rJMFF051L14+ CAGTGTGGAAAAATGTCGGATACTGTAATTAGTAGTCTGATGATCCTGTTGTTATGTGCT
                      ____________________________________________________________
consensus CAGTGTGGAAAAATGTCGGATACTGTAATTAGTAGTCTGATGATCCTGTTGTTATGTGCT
 
. : . : . : . : . : . :
rJMSF008B24+ GCTTGTGTTACCCCTTCCTTGTAGATTAGAGCCATACACGAGCTTATGTTTCTCCGTAGA
rJMFF014I20+ GNTTGTGTTACCCCTTCCTTGTAGATTAGAGCCATACACGAGCTTATGTTTNTCCGTAGA
rJMSF033O05+ GCTTGTGTTACCCCTTCCTTGTAGATTAGAGCCATACACGAGCTTATGTTTCTCCGTAGA
rJMFF032O20+ GCTTGTGTTACCCCTTCCTTGTAGATTAGAGCCATACACGAGCTTATGTTTCTCCGTAGA
rJMFF051L14+ GCTTGTGTTACCCCTTCCTTGTAGATTAGAGCCATACACGAGCTTATGTTTCTCCGTAGA
                      ____________________________________________________________
consensus GCTTGTGTTACCCCTTCCTTGTAGATTAGAGCCATACACGAGCTTATGTTTCTCCGTAGA
 
. : . : . : . : . : . :
rJMSF008B24+ TTAGCCATACGAAGTTGATAGTCGATGTGGTTGTCCAGTCTGTTATATACGTCGTGTGGA
rJMFF014I20+ TTAGCCATACGAAGNTGATAGTCGATGTGGTTGT-CAGTCTGTTATATACGTCGTGTGGA
rJMSF033O05+ TTAGCCATACGAAGTTGATAGTCGATGTGGTTGT-CAGTCTGTTATATACGTCGTGTGGA
rJMFF032O20+ TTAGCCATACGAAGTTGATAGTCGATGTGGTTGT-CAGTCTGTTATATACGTCGTGTGGA
rJMFF051L14+ TTAGCCATACGAAGTTGATAGTCGATGTGGTTGT-CAGTCTGTTATATACGTCGTGTGGA
                      ____________________________________________________________
consensus TTAGCCATACGAAGTTGATAGTCGATGTGGTTGT-CAGTCTGTTATATACGTCGTGTGGA
 
. : . : . : . : . : . :
rJMSF008B24+ ATTTTTTTTT
rJMFF014I20+ ANTTTTTTTT
rJMSF033O05+ ATTTTTTTTT
rJMFF032O20+ ATTTTTTTTTTATTTTTTTTGTATTTTCTCCCTTAGAACTCAAGTAAATAGGATGAATCT
rJMFF051L14+ A-TTTTTTTTTATTTTTTTTGTATTTTCTCCCTTAGAACTCAAGTAAATAGGATGAATCT
                      ____________________________________________________________
consensus ATTTTTTTTTTATTTTTTTTGTATTTTCTCCCTTAGAACTCAAGTAAATAGGATGAATCT
 
. : . : . : . : . : . :
rJMFF032O20+ TACCATCATCA
rJMFF051L14+ TACCATCATCATGTTCTCATGCTCACCTTTAATTATGTAAGAGTCTTTCATAGTAAAACA
                      ____________________________________________________________
consensus TACCATCATCATGTTCTCATGCTCACCTTTAATTATGTAAGAGTCTTTCATAGTAAAACA
 
. : . : . : . : . : . :
rJMFF051L14+ CATTGCATATTTAGTCAAATAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus CATTGCATATTTAGTCAAATAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG