Contig 004159:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020C20Sequence574002451 (9)emb|CDP02088.1|1e-80unnamed protein product [Coffea canephora]767004159 (8)ref|XP_007031533.1|9e-102Isocitrate/isopropylmalate dehydrogenase family protein isoform 1 [Theobroma ca
JMFF022H15Sequence506002451 (9)emb|CDP02088.1|7e-64unnamed protein product [Coffea canephora]760004159 (8)ref|XP_007031533.1|3e-101Isocitrate/isopropylmalate dehydrogenase family protein isoform 1 [Theobroma ca
JMFF027N08Sequence571002451 (9)emb|CDP02088.1|2e-80unnamed protein product [Coffea canephora]635004159 (8)ref|XP_011097423.1|1e-64PREDICTED: isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial isoform
JMFF049P20Sequence628002451 (9)emb|CDP02088.1|3e-80unnamed protein product [Coffea canephora]579004159 (8)ref|XP_011097423.1|2e-45PREDICTED: isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial isoform
JMSF010P12Sequence220002451 (9)760004159 (8)ref|XP_007031533.1|2e-104Isocitrate/isopropylmalate dehydrogenase family protein isoform 1 [Theobroma ca
JMSF036A20Sequence669002451 (9)emb|CDP02088.1|6e-106unnamed protein product [Coffea canephora]669004159 (8)ref|XP_011097423.1|3e-80PREDICTED: isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial isoform
JMSF044L16Sequence823002451 (9)ref|XP_009768205.1|6e-141PREDICTED: isocitrate dehydrogenase [NADP] [Nicotiana sylvestris]783004159 (8)ref|XP_007031533.1|2e-106Isocitrate/isopropylmalate dehydrogenase family protein isoform 1 [Theobroma ca
JMSF048F16Sequence675002451 (9)emb|CDP02088.1|1e-96unnamed protein product [Coffea canephora]831004159 (8)ref|XP_011097423.1|1e-111PREDICTED: isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial isoform

Alignment

This contig is upended


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rJMSF048F16+                         CAATTTGAAGAATATGANGAAGNTCAAGGACATCTTGAAGAGGTA
                      ____________________________________________________________
consensus                            CAATTTGAAGAATATGANGAAGNTCAAGGACATCTTGAAGAGGTA
 
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rJMSF048F16+          TATCAGGAGAAGTGGAAAGCGAAGTTCGATGAACACTCAATATGGTATGAGCACCGCTTG
rJMSF010P12+                                    CGATGAACACTCCATATGGTATGAGCNCCGCTTG
rJMSF044L16+                                    CGATGAACACTCAATATGGTATGAGCACCGCTTG
rJMFF022H15+                                                       TATGAGCACCGCTTG
rJMFF020C20+                                                 ATATGGTATGAGCNCCGCTTG
                      ____________________________________________________________
consensus             TATCAGGAGAAGTGGAAAGCGAAGTTCGATGAACACTCAATATGGTATGAGCACCGCTTG
 
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rJMSF048F16+          ATAGATGACATGGTAGCTTATGCAGTAAAAAGTGATGGTGGCTATGTTTGGGCATGCAAA
rJMSF010P12+          ATAGATGACATGGTAGCTTATGCAGTAAAAAGTGATGGTGGCTATGTTTGGGCATGCAAA
rJMSF044L16+          ATAGATGACATGGTAGCTTATGCAGTAAAAAGTGATGGTGGCTATGTTTGGGCATGCAAA
rJMFF022H15+          ATAGATGACATGGTAGCTTATGCAGTAAAAAGTGATGGTGGCTATGTTTGGGCATGCAAA
rJMFF020C20+          ATAGATGACATGGTAGCTTATGCAGTAAAAAGTGATGGTGGCTATGTTTGGGCATGCAAA
                      ____________________________________________________________
consensus             ATAGATGACATGGTAGCTTATGCAGTAAAAAGTGATGGTGGCTATGTTTGGGCATGCAAA
 
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rJMSF048F16+          AATTATGATGGAGATGTGCAGAGTGATTTACTTGCTCAAGGATTCGGTTCTCTGGGCCTT
rJMSF010P12+          AATTATGATGGAGATGTGCAGAGTGATTTACTTGCTCAAGGATTCGGTTCTCTGGGCCTT
rJMSF036A20+           ATTATGATGGAGATGTGCAGAGTGATTTACTTGCTCAAGGATTCGGTTCTCTGGGCCTT
rJMSF044L16+          AATTATGATGGAGATGTGCAGAGTGATTTACTTGCTCAAGGATTCGGTTCTCTGGGCCTT
rJMFF022H15+          AATTATGATGGAGATGTGCAGAGTGATTTACTTGCTCAAGGATTCGGTTCTCTGGGCCTT
rJMFF020C20+          AATTATGATGGAGATGTGCAGAGTGATTTACTTGCTCAAGGATTCGGTTCTCTGGGCCTT
                      ____________________________________________________________
consensus             AATTATGATGGAGATGTGCAGAGTGATTTACTTGCTCAAGGATTCGGTTCTCTGGGCCTT
 
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rJMSF048F16+          ATGACTTCTGTTTTGTTATCTTCTGATGGCAAAACTTTAGAAGCTGAAGCAGCTCATGGA
rJMSF010P12+          ATGACTTCTGTTTTGTTATCTTCTGATGGCAAAACTTTAGAAGCTGAAGCAGCTCATGGA
rJMSF036A20+          ATGACTTCTGTTTTGTTATCTTCTGATGGCAAAACTTTAGAAGCTGAAGCAGCTCATGGA
rJMSF044L16+          ATGACTTCTGTTTTGTTATCTTCTGATGGCAAAACTTTAGAAGCTGAAGCAGCTCATGGA
rJMFF022H15+          ATGACTTCTGTTTTGTTATCTTCTGATGGCAAAACTTTAGAAGCTGAAGCAGCTCATGGA
rJMFF020C20+          ATGACTTCTGTTTTGTTATCTTCTGATGGCAAAACTTTAGAAGCTGAAGCAGCTCATGGA
rJMFF027N08+             ACTTCTGTTTTGTTATCTTCTGATGGCAAAACTTTAGAAGCTGAAGCAGCTCATGGA
                      ____________________________________________________________
consensus             ATGACTTCTGTTTTGTTATCTTCTGATGGCAAAACTTTAGAAGCTGAAGCAGCTCATGGA
 
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rJMSF048F16+          ACTGTAACTCGTCACTTTCGGCTGCATCAGAAGGGACAAGAAACCAGCACAAATAGTATT
rJMSF010P12+          ACTGTAACTCGTCACTTTCGGCTGCATCAGAAGGGACAAGAAACCAGCACAAATAGTATT
rJMSF036A20+          ACTGTAACTCGTCACTTTCGGCTGCATCAGAAGGGACAAGAAACCAGCACAAATAGTATT
rJMSF044L16+          ACTGTAACTCGTCACTTTCGGCTGCATCAGAAGGGACAAGAAACCAGCACAAATAGTATT
rJMFF022H15+          ACTGTAACTCGTCACTTTCGGCTGCATCAGAAGGGACAAGAAACCAGCACAAATAGTATT
rJMFF020C20+          ACTGTAACTCGTCACTTTCGGCTGCATCAGAAGGGACAAGAAACCAGCACAAATAGTATT
rJMFF027N08+          ACTGTAACTCGTCACTTTCGGCTGCATCAGAAGGGACAAGAAACCAGCACAAATAGTATT
rJMFF049P20+                                TGCATCAGAAGGGACAAGAAACCAGCACAAATAGTATT
                      ____________________________________________________________
consensus             ACTGTAACTCGTCACTTTCGGCTGCATCAGAAGGGACAAGAAACCAGCACAAATAGTATT
 
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rJMSF048F16+          GCATCCATTTTTGCATGGACCAGAGGACTAGGACATAGGGCTGAACTTGATGAGAACAAG
rJMSF010P12+          GCATCCATTTTTGCATGGACCAGAGGACTAGGACATAGGGCTGAACTTGATGAGAACAAG
rJMSF036A20+          GCATCCATTTTTGCATGGACCAGAGGACTAGGACATAGGGCTGAACTTGATGAGAACAAG
rJMSF044L16+          GCATCCATTTTTGCATGGACCAGAGGACTAGGACATAGGGCTGAACTTGATGAGAACAAG
rJMFF022H15+          GCATCCATTTTTGCATGGACCAGAGGACTAGGACATAGGGCTGAACTTGATGAGAACAAG
rJMFF020C20+          GCATCCATTTTTGCATGGACCAGAGGACTAGGACATAGGGCTGAACTTGATGAGAACAAG
rJMFF027N08+          GCATCCATTTTTGCATGGACCAGAGGACTAGGACATAGGGCTGAACTTGATGAGAACAAG
rJMFF049P20+          GCATCCATTTTTGCATGGACCAGAGGACTAGGACATAGGGCTGAACTTGATGAGAACAAG
                      ____________________________________________________________
consensus             GCATCCATTTTTGCATGGACCAGAGGACTAGGACATAGGGCTGAACTTGATGAGAACAAG
 
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rJMSF048F16+          AATTTAATGGATTTTGTTCAGAAACTAGAGGCTGCTTGCATTGAGACAGTAGAGTCGGGG
rJMSF010P12+          AATTTAATGGATTTTGTTCAGAAACTAGAGGCTGCTTGCATTGAGACAGTAGAGTCGGGG
rJMSF036A20+          AATTTAATGGATTTTGTTCAGAAACTAGAGGCTGCTTGCATTGAGACAGTAGAGTCGGGG
rJMSF044L16+          AATTTAATGGATTTTGTTCAGAAACTAGAGGCTGCTTGCATTGAGACAGTAGAGTCGGGG
rJMFF022H15+          AATTTAATGGATTTTGTTCAGAAACTAGAGGCTGCTTGCATTGAGACAGTAGAGTCGGGG
rJMFF020C20+          AATTTAATGGATTTTGTTCAGAAACTAGAGGCTGCTTGCATTGAGACAGTAGAGTCGGGG
rJMFF027N08+          AATTTAATGGATTTTGTTCAGAAACTAGAGGCTGCTTGCATTGAGACAGTAGAGTCGGGG
rJMFF049P20+          AATTTAATGGATTTTGTTCAGAAACTAGAGGCTGCTTGCATTGAGACAGTAGAGTCGGGG
                      ____________________________________________________________
consensus             AATTTAATGGATTTTGTTCAGAAACTAGAGGCTGCTTGCATTGAGACAGTAGAGTCGGGG
 
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rJMSF048F16+          AAGATGACCAAGGATCTTGCACTGTTGAATCATGGACCCAAGGTATCAAGGGAGTTATAC
rJMSF010P12+          AAGATGACCAAGGATCTTGCACTGTTGAATCATGGACCCAAGGTATCAAGGGAGTTATAC
rJMSF036A20+          AAGATGACCAAGGATCTTGCACTGTTGAATCATGGACCCAAGGTATCAAGGGAGTTATAC
rJMSF044L16+          AAGATGACCAAGGATCTTGCACTGTTGAATCATGGACCCAAGGTATCAAGGGAGTTATAC
rJMFF022H15+          AAGATGACCAAGGATCTTGCACTGTTGAATCATGGACCCAAGGTATCAAGGGAGTTATAC
rJMFF020C20+          AAGATGACCAAGGATCTTGCACTGTTGAATCATGGACCCAAGGTATCAAGGGAGTTATAC
rJMFF027N08+          AAGATGACCAAGGATCTTGCACTGTTGAATCATGGACCCAAGGTATCAAGGGAGTTATAC
rJMFF049P20+          AAGATGACCAAGGATCTTGCACTGTTGAATCATGGACCCAAGGTATCAAGGGAGTTATAC
                      ____________________________________________________________
consensus             AAGATGACCAAGGATCTTGCACTGTTGAATCATGGACCCAAGGTATCAAGGGAGTTATAC
 
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rJMSF048F16+          TTGAACACTGAAGAGTTCATTGACGCTGTAGCACAGAATCTCAGGTCTAAGATCGGCTCT
rJMSF010P12+          TTGAACACTGAAGAGTTCATTGACGCTGTAGCACAGAATCTCAGGTCTAAGATCGGCTCT
rJMSF036A20+          TTGAACACTGAAGAGTTCATTGACGCTGTAGCACAGAATCTCAGGTCTAAGATCGGCTCT
rJMSF044L16+          TTGAACACTGAAGAGTTCATTGACGCTGTAGCACAGAATCTCAGGTCTAAGATCGGCTCT
rJMFF022H15+          TTGAACACTGAAGAGTTCATTGACGCTGTAGCACAGAATCTCAGGTCTAAGATCGGCTCT
rJMFF020C20+          TTGAACACTGAAGAGTTCATTGACGCTGTAGCACAGAATCTCAGGTCTAAGATCGGCTCT
rJMFF027N08+          TTGAACACTGAAGAGTTCATTGACGCTGTAGCACAGAATCTCAGGTCTAAGATCGGCTCT
rJMFF049P20+          TTGAACACTGAAGAGTTCATTGACGCTGTAGCACAGAATCTCAGGTCTAAGATCGGCTCT
                      ____________________________________________________________
consensus             TTGAACACTGAAGAGTTCATTGACGCTGTAGCACAGAATCTCAGGTCTAAGATCGGCTCT
 
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rJMSF048F16+          CCTGCACTTGCATGAAATTATATGTATACTCCCCGTGATTGCACTTTGGAAAGCCTAGAG
rJMSF010P12+          CCTGCACTTGCATGAAATTATATGTATACTCCCCGTGATTGCACTTTGGAAAGCCTAGAG
rJMSF036A20+          CCTGCACTTGCATGAAATTATATGTATACTCCCCGTGATTGCACTTTGGAAAGCCTAGAG
rJMSF044L16+          CCTGCACTTGCATGAAATTATATGTATACTCCCCGTGATTGCACTTTGGAAAGCCTAGAG
rJMFF022H15+          CCTGCACTTGCATGAAATTATATGTATACTCCCCGTGATTGCACTTTGGAAAGCCTAGAG
rJMFF020C20+          CCTGCACTTGCATGAAATTATATGTATACTCCCCGTGATTGCACTTTGGAAAGCCTAGAG
rJMFF027N08+          CCTGCACTTGCATGAAATTATATGTATACTCCCCGTGATTGCACTTTGGAAAGCCTAGAG
rJMFF049P20+          CCTGCACTTGCATGAAATTATATGTATACTCCCCGTGATTGCACTTTGGAAAGCCTAGAG
                      ____________________________________________________________
consensus             CCTGCACTTGCATGAAATTATATGTATACTCCCCGTGATTGCACTTTGGAAAGCCTAGAG
 
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rJMSF048F16+          TTAAATACAGAGCAGACAGACCATTCACAGCAATACATGGATGAGACTATGAGAGGAAGA
rJMSF010P12+          TTAAATACAGAGCAGACAGACCATTCACAGCAATACATGGATGAGACTATGAGAGGAAGA
rJMSF036A20+          TTAAATACAGAGCAGACAGACCATTCACAGCAATACATGGATGAGACTATGAGAGGAAGA
rJMSF044L16+          TTAAATACAGAGCAGACAGACCATTCACAGCAATACATGGATGAGACTATGAGAGGAAGA
rJMFF022H15+          TTAAATACAGAGCAGACAGACCATTCACAGCAATACATGGATGAGACTATGAGAGGAAGA
rJMFF020C20+          TTAAATACAGAGCAGACAGACCATTCACAGCAATACATGGATGAGACTATGAGAGGAAGA
rJMFF027N08+          TTAAATACAGAGCAGACAGACCATTCACAGCAATACATGGATGAGACTATGAGAGGAAGA
rJMFF049P20+          TTAAATACAGAGCAGACAGACCATTCACAGCAATACATGGATGAGACTATGAGAGGAAGA
                      ____________________________________________________________
consensus             TTAAATACAGAGCAGACAGACCATTCACAGCAATACATGGATGAGACTATGAGAGGAAGA
 
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rJMSF048F16+          TAGTTTTGACATTGACTTGCTTTTGGTTCCTTCTCACAACATATATAATTTATCCCATCC
rJMSF010P12+          TAGTTTTGACATTGACTTGCTTTTGGTTCCTTCTCACAACATATATAATTTATCCCATCC
rJMSF036A20+          TAGTTTTGACATTGACTTGCTTTTGGTTCCTTCTCACAACATATATAATTTATCCCATCC
rJMSF044L16+          TAGTTTTGACATTGACTTGCTTTTGGTTCCTTCTCACAACATATATAATTTATCCCATCC
rJMFF022H15+          TAGTTTTGACATTGACTTGCTTTTGGTTCCTTCTCACAACATATATAATTTATCCCATCC
rJMFF020C20+          TAGTTTTGACATTGACTTGCTTTTGGTTCCTTCTCACAACATATATAATTTATCCCATCC
rJMFF027N08+          TAGTTTTGACATTGACTTGCTTTTGGTTCCTTCTCACAACATATATAATTTATCCCATCC
rJMFF049P20+          TAGTTTTGACATTGACTTGCTTTTGGTTCCTTCTCACAACATATATAATTTATCCCATCC
                      ____________________________________________________________
consensus             TAGTTTTGACATTGACTTGCTTTTGGTTCCTTCTCACAACATATATAATTTATCCCATCC
 
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rJMSF048F16+          AATCCACAGAAAGGTTCCCAAATCCTTTAGGTAATGGATTCAAATCAATTTGAACTAAAT
rJMSF010P12+          AATCCACAGAAAGGTTCCCAAATCCTTTAGGTAATGGATTCAAATCAATTTGAACTAAAT
rJMSF036A20+          AATCCACAGAAAGGTTCCCAAATCCTTTAGGTAATGGATTCAAATCAATTTGAACTAAAT
rJMSF044L16+          AATCCACAGAAAGGTTCCCAAATCCTTTAGGTAATGGATTCAAATCAATTTGAACTAAAT
rJMFF022H15+          AATCCACAGAAAGGTTCCCAAATCCTTTAGGTAATGGATTCAAATCAATTTGAACTAAAT
rJMFF020C20+          AATCCACAGAAAGGTTCCCAAATCCTTTAGGTAATGGATTCAAATCAATTTGAACTAAAT
rJMFF027N08+          AATCCACAGAAAGGTTCCCAAATCCTTTAGGTAATGGATTCAAATCAATTTGAACTAAAT
rJMFF049P20+          AATCCACAGAAAGGTTCCCAAATCCTTTAGGTAATGGATTCAAATCAATTTGAACTAAAT
                      ____________________________________________________________
consensus             AATCCACAGAAAGGTTCCCAAATCCTTTAGGTAATGGATTCAAATCAATTTGAACTAAAT
 
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rJMSF048F16+          ACTTAT                                                      
rJMSF010P12+          ACTTAT                                                      
rJMSF036A20+          ACTTATATAT                                                  
rJMSF044L16+          ACTTATATATTTTTC                                             
rJMFF022H15+          ACTTATATATTTTTCAGAGCACGAT                                   
rJMFF020C20+          ACTTATATATTTTTCAGAGCACGAT                                   
rJMFF027N08+          ACTTATATATTTTTCAGAGCACGATGATTTTAATAAAA                      
rJMFF049P20+          ACTTATATATTTTTCAGAGCACGATGATTTTAATAAAATGCTTGATATTTTGAGATGCCG
                      ____________________________________________________________
consensus             ACTTATATATTTTTCAGAGCACGATGATTTTAATAAAATGCTTGATATTTTGAGATGCCG