| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017A05 | Sequence | 540 | 004152 (6) | ref|XP_009773786.1| | 5e-69 | PREDICTED: NAP1-related protein 2-like [Nicotiana sylvestris] | 772 | 004152 (6) | gb|KHN21849.1| | 3e-66 | Protein SET [Glycine soja] |
| JMFF049C01 | Sequence | 519 | 004152 (6) | ref|XP_009773786.1| | 2e-64 | PREDICTED: NAP1-related protein 2-like [Nicotiana sylvestris] | 449 | 004152 (6) | gb|KJB06271.1| | 9e-07 | hypothetical protein B456_001G072000 [Gossypium raimondii] |
| JMSF015G21 | Sequence | 437 | 004152 (6) | ref|XP_009773786.1| | 3e-59 | PREDICTED: NAP1-related protein 2-like [Nicotiana sylvestris] | 666 | 004152 (6) | ref|XP_003523025.1| | 1e-41 | PREDICTED: NAP1-related protein 2 isoform X1 [Glycine max] |
This contig is upended
. : . : . : . : . : . :
JMFF049C01- GCGAGTTTGTGTCGATATAAACGCAGGCGAAGGAGGGTTTAGGGTT
JMFF017A05- GTCTTTTGTCGCGAGTTTGTGTCGATATAAACGCAGGCGAAGGAGGGTTTAGGGTT
____________________________________________________________
consensus GTCTTTTGTCGCGAGTTTGTGTCGATATAAACGCAGGCGAAGGAGGGTTTAGGGTT
. : . : . : . : . : . :
JMFF049C01- TAAGCCTCTCCCTGAGTCCCAGCTCTAAACAGAAGTAGAAGAAGAACAACAACAAGAAGA
JMSF015G21- AAGCCTCTCCCTGAGTCCCAGCTCTAAACAGAAGTAGAAGAAGAACAACAACAAGAAGA
JMFF017A05- TAAGCCTCTCCCTGAGTCCCAGCTCTAAACAGAAGTAGAAGAAGAACAACAACAAGAAGA
____________________________________________________________
consensus TAAGCCTCTCCCTGAGTCCCAGCTCTAAACAGAAGTAGAAGAAGAACAACAACAAGAAGA
. : . : . : . : . : . :
JMFF049C01- AAATGGTGGCGGATAAAGGGAAGAAGCAGAAGGTGGAAGAGAAAGAGGAAAACCACATTG
JMSF015G21- AAATGGTGGCGGATAAAGGGAAGAAGCAGAAGGTGGAAGAGAAAGAGGAAAACCACATTG
JMFF017A05- AAATGGTGGCGGATAAAGGGAAGAAGCAGAAGGTGGAAGAGAAAGAGGAAAACCACATTG
____________________________________________________________
consensus AAATGGTGGCGGATAAAGGGAAGAAGCAGAAGGTGGAAGAGAAAGAGGAAAACCACATTG
. : . : . : . : . : . :
JMFF049C01- ACAAAGAGCTTGTCCTATCAATCGAAAAACTTCAAGAGATCCAAGATGAGCTCGAAAAGA
JMSF015G21- ACAAAGAGCTTGTCCTATCAATCGAAAAACTTCAAGAGATCCAAGATGAGCTCGAAAAGA
JMFF017A05- ACAAAGAGCTTGTCCTATCAATCGAAAAACTTCAAGAGATCCAAGATGAGCTCGAAAAGA
____________________________________________________________
consensus ACAAAGAGCTTGTCCTATCAATCGAAAAACTTCAAGAGATCCAAGATGAGCTCGAAAAGA
. : . : . : . : . : . :
JMFF049C01- TCAATGAAGAAGCAAGTGATAAGGTTTTGGAAGTAGAGCAAAAGTATAGTGAGATACGCA
JMSF015G21- CCAATGAAGAAGCAAGTGATAAGGTTTTGGAAGTAGAGCAAAAGTATAGTGAGATACGCA
JMFF017A05- TCAATGAAGAAGCAAGTGATAAGGTTTTGGAAGTAGAGCAAAAGTATAGTGAGATACGCA
____________________________________________________________
consensus TCAATGAAGAAGCAAGTGATAAGGTTTTGGAAGTAGAGCAAAAGTATAGTGAGATACGCA
. : . : . : . : . : . :
JMFF049C01- AGCCTGTCTACCAGAAGCGAAATGACATAATTAAATCTATTCCAGATTTTTGGTTGACAG
JMSF015G21- AGCCTGTCTACCAGAAGCGAAATGACATAATTAAATCTATTCCAGATTTTTGGTTGACAG
JMFF017A05- AGCCTGTCTACCAGAAGCGAAATGACATAATTAAATCTATTCCAGATTTTTGGTTGACAG
rJMFF017A05+ GTTGACAG
____________________________________________________________
consensus AGCCTGTCTACCAGAAGCGAAATGACATAATTAAATCTATTCCAGATTTTTGGTTGACAG
. : . : . : . : . : . :
JMFF049C01- CTTTTTTGAGTCATCCAGTCCTTAGTGAACTTTTGACTGAAGAGGACCAAAAGATTTTCA
JMSF015G21- CTTTTTTGAGTCATCCAGTCCTTAGTGAACTTTTGACTGAAGAGGACCAAAAGATTTTCA
JMFF017A05- CTTTTTTGAGTCATCCAGTCCTTAGTGAACTTTTGACTGAAGAGGACCAAAAGATTTTCA
rJMFF017A05+ CTTTTTTGAGTCATCCAGTCCTTAGTGAACTTTTGACTGAAGAGGACCAAAAGATTTTCA
____________________________________________________________
consensus CTTTTTTGAGTCATCCAGTCCTTAGTGAACTTTTGACTGAAGAGGACCAAAAGATTTTCA
. : . : . : . : . : . :
JMFF049C01- AGTTTCTGAGTTCCATTGAAGTGGAGGATTCTAAAGACGTCAAATCTGGTTATTCCATCA
JMSF015G21- AGTTTCTGAGTTCCATTGAAGTGGAGGATTCTAAAGACGTCAAATCTGGTTATTCAATCA
JMFF017A05- AGTTTCTGAGTTCCATTGAAGTGGAGGATTCTAAAGACGTCAAATCTGGTTATTCAATCA
rJMSF015G21+ TAAAGACGTCAAATCTGGTTATTCAATCA
rJMFF017A05+ AGTTTNTGAGTTCCATTGAAGTGGAGGATTNTAAAGACGTCAAATCTGGTTATTCAATCA
____________________________________________________________
consensus AGTTTCTGAGTTCCATTGAAGTGGAGGATTCTAAAGACGTCAAATCTGGTTATTCAATCA
. : . : . : . : . : . :
JMFF049C01- TATTTAACTTTAAATCCAACCCCTATTTTGAAGATACAA
JMSF015G21- TATTTAACTTTAAATCC
JMFF017A05- TATTTAACTTTAAATCCAACCCCTATTTTGAAGATACAAAGCTCATGAAGAGCTATGCTT
rJMSF015G21+ TATTTAACTTTAAATCCAACCCCTATTTTGAAGATACAAAGCTCATGAAGAGCTNTGCTT
rJMFF017A05+ TATTTAACTTTAAATCCAACCCCTATTTTGAAGATACAAAGCTCATGAAGAGCTATGCTT
____________________________________________________________
consensus TATTTAACTTTAAATCCAACCCCTATTTTGAAGATACAAAGCTCATGAAGAGCTATGCTT
. : . : . : . : . : . :
JMFF017A05- TCCA
rJMSF015G21+ TCCAAGAAGAAGGNGCAACNCAAATTACTGCCNCTCCAATCAAATGGAAAGAAGGCNTGC
rJMFF017A05+ TCCAAGAAGAAGGTGCAACNCAAATTNCTGCCNCTCCAATCAAATGGAAAGAAGGCATGC
____________________________________________________________
consensus TCCAAGAAGAAGGTGCAACNCAAATTACTGCCNCTCCAATCAAATGGAAAGAAGGCATGC
. : . : . : . : . : . :
rJMSF015G21+ AAATCCCAAATGGAGTTGCTAATGNGAAGAAAGGAAATAAGCGTCCTCCNCCTGAGGAAA
rJMFF017A05+ AAATCCCAAATGGAGTTGCTAATGAGAAGAAAGGAAATAAGCGTCCTCCGCCTGAGGAAA
____________________________________________________________
consensus AAATCCCAAATGGAGTTGCTAATGAGAAGAAAGGAAATAAGCGTCCTCCGCCTGAGGAAA
. : . : . : . : . : . :
rJMSF015G21+ GCTTNTTCNCTTGGTTCNGNGAAACCCNACAAAAGGATGAAGATATGGATGNCNTTCNTG
rJMFF017A05+ GCTTNTTCACTTGGTTCAGTGAAACCCAACAAAAGGATGAAGATATGGATGACATTCATG
rJMFF049C01+ AAAAGGATGAAGATATGGATGACATTCATG
____________________________________________________________
consensus GCTTNTTCACTTGGTTCAGTGAAACCCAACAAAAGGATGAAGATATGGATGACATTCATG
. : . : . : . : . : . :
rJMSF015G21+ ATGAGGTTGCTGAGTTAATCNGGGNGGACTTATGGCCCGACCCTCTNTNTTACTTCAATA
rJMFF017A05+ ATGAGGTTGCTGAGTTAATCAGGGAGGACTTATGGCCCGACCCTNTNTNTTACTTCAATA
rJMFF049C01+ ATGAGGTTGCTGAGTTAATCAGGGAGGACTTATGGCCCGACCCTCTCTCTTACTTCAATA
____________________________________________________________
consensus ATGAGGTTGCTGAGTTAATCAGGGAGGACTTATGGCCCGACCCTCTCTCTTACTTCAATA
. : . : . : . : . : . :
rJMSF015G21+ ATCNGGAAGCTGATGATGAAGAATTTGAGGGTGATGATGAGGAGAAGGGCNGTGATGGGT
rJMFF017A05+ ATCAGGAAGCTGATGATGAAGAATTTGAGGGTGATGATGAGGAGAAGGGCAGTGATGGGT
rJMFF049C01+ ATCAGGAAGCTGATGATGAAGAATTTGAGGGTGATGATGAGGAGAAGGGCAGTGATGGGT
____________________________________________________________
consensus ATCAGGAAGCTGATGATGAAGAATTTGAGGGTGATGATGAGGAGAAGGGCAGTGATGGGT
. : . : . : . : . : . :
rJMSF015G21+ NTGAGGATGATGAAGAACNAGATGGCGGTGATGATGACGATGAGGATGGTGATGAAGATG
rJMFF017A05+ NTGAGGATGATGAAGAACAAGATGGCGGTGATGATGACGATGAGGATGGTGATGAAGATG
rJMFF049C01+ CTGAGGATGATGAAGAACAAGATGGCGGTGATGATGACGATGAGGATGGTGATGAAGATG
____________________________________________________________
consensus CTGAGGATGATGAAGAACAAGATGGCGGTGATGATGACGATGAGGATGGTGATGAAGATG
. : . : . : . : . : . :
rJMSF015G21+ ACGACTAACTGTTTNTACCNTGTGCTTTTTAGTTTATGAGTTATCCNCNCTTTTGTTTTT
rJMFF017A05+ ACGACTAACTGTTTNTACCATGTGCTTTTTAGTTTATGAGTTATCCTCACTTTTGTTTTT
rJMFF049C01+ ACGACTAACTGTTTTTACCATGTGCTTTTTAGTTTATGAGTTATCCTCACTTTTGTTTTT
____________________________________________________________
consensus ACGACTAACTGTTTTTACCATGTGCTTTTTAGTTTATGAGTTATCCTCACTTTTGTTTTT
. : . : . : . : . : . :
rJMSF015G21+ TTGTTGGTACTGNGACNGTATGTAATAGGGNGTTGAATNTTCTGGNGAACCNACCNAAAC
rJMFF017A05+ TTGTTGGTACTGTGACTGTATGTAATAGGGTGTTGAATNTTNTGGAGAACCAACCAAAAC
rJMFF049C01+ TTGTTGGTACTGTGACTGTATGTAATAGGGTGTTGAATCTTCTGGAGAACCAACCAAAAC
____________________________________________________________
consensus TTGTTGGTACTGTGACTGTATGTAATAGGGTGTTGAATCTTCTGGAGAACCAACCAAAAC
. : . : . : . : . : . :
rJMSF015G21+ TGAAAATGACCGGGATTTTTTTTTTTTATTTTTTTTTCAGCTTCTATAGGCATCTAATTC
rJMFF017A05+ TGAAAATGACCGGGA--TTTTTTTTTTATTTTTTTTTCAGCTTCTATAGGCATCTAATTC
rJMFF049C01+ TGAAAATGACCGGGA-TTTTTTTTTTTATTTTTTTTTCAGCTTCTATAGGCATCTAATTC
____________________________________________________________
consensus TGAAAATGACCGGGA-TTTTTTTTTTTATTTTTTTTTCAGCTTCTATAGGCATCTAATTC
. : . : . : . : . : . :
rJMSF015G21+ CTTAGCTGTGTGCTGAATATTCTCTTTTGCCATCCTT
rJMFF017A05+ CTTAGCTGTGTGCTGAATATTCTCTTTTGCCATCCTT
rJMFF049C01+ CTTAGCTGTGTGCTGAATATTCTCTTTTGCCATCCTTTGTTTTAAGATGAAAATTACTTC
____________________________________________________________
consensus CTTAGCTGTGTGCTGAATATTCTCTTTTGCCATCCTTTGTTTTAAGATGAAAATTACTTC