Contig 004123:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038M03Sequence462006044 (3)ref|XP_011081914.1|1e-55PREDICTED: 3-ketoacyl-CoA synthase 11 [Sesamum indicum]751004123 (3)ref|XP_010048253.1|4e-82PREDICTED: 3-ketoacyl-CoA synthase 11-like [Eucalyptus grandis] gb|KCW80459.1| h
JMFF039P19Sequence456006044 (3)ref|XP_011081914.1|5e-54PREDICTED: 3-ketoacyl-CoA synthase 11 [Sesamum indicum]691004123 (3)ref|XP_010048253.1|1e-83PREDICTED: 3-ketoacyl-CoA synthase 11-like [Eucalyptus grandis] gb|KCW80459.1| h
JMFF045G10Sequence631006044 (3)ref|XP_011081914.1|6e-97PREDICTED: 3-ketoacyl-CoA synthase 11 [Sesamum indicum]651004123 (3)ref|XP_010048253.1|2e-57PREDICTED: 3-ketoacyl-CoA synthase 11-like [Eucalyptus grandis] gb|KCW80459.1| h

Alignment

This contig is upended


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rJMFF038M03+                                AACTGATGGCAGTTGCCGGTGATGCTCTCAAGACCCAA
                      ____________________________________________________________
consensus                                   AACTGATGGCAGTTGCCGGTGATGCTCTCAAGACCCAA
 
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rJMFF039P19+                                       CCCATGTCCGAGCAGTTGCTTTTCTTTGCCA
rJMFF038M03+          TATCACTACACTGGGTCCTCTCGTGCTTCCCCATGTCCGAGCAGTTGCTTTTCTTTGCCA
                      ____________________________________________________________
consensus             TATCACTACACTGGGTCCTCTCGTGCTTCCCCATGTCCGAGCAGTTGCTTTTCTTTGCCA
 
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rJMFF039P19+          CATTGGTTGGTAGAAAAATCTTCAAAATGAAGATTAAGCCATACATACCAGATTTTAAGT
rJMFF038M03+          CATTGGTTGGTAGAAAAATCTTCAAAATGAAGATTAAGCCATACATACCAGATTTTAAGT
                      ____________________________________________________________
consensus             CATTGGTTGGTAGAAAAATCTTCAAAATGAAGATTAAGCCATACATACCAGATTTTAAGT
 
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rJMFF039P19+          TGGCATTCGAGCACTTCTGCATTCATGCTGGTGGAAGGGCAGTGCTGGATGAATTGGAGA
rJMFF038M03+          TGGCATTCGAGCACTTCTGCATTCATGCTGGTGGAAGGGCAGTGCTGGATGAATTGGAGA
rJMFF045G10+                   AGCACTTCTGCATTCATGCTGGTGGAAGGGCAGTGCTGGATGAATTGGAGA
                      ____________________________________________________________
consensus             TGGCATTCGAGCACTTCTGCATTCATGCTGGTGGAAGGGCAGTGCTGGATGAATTGGAGA
 
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rJMFF039P19+          AAAACTTGCAGCTCTCCGATTGGCACATGGAACCTTCAAGGATGACACTCTACCGATTCG
rJMFF038M03+          AAAACTTGCAGCTCTCCGATTGGCACATGGAACCTTCAAGGATGACACTCTACCGATTCG
rJMFF045G10+          AAAACTTGCAGCTCTCCGATTGGCACATGGAACCTTCAAGGATGACACTCTACCGATTCG
                      ____________________________________________________________
consensus             AAAACTTGCAGCTCTCCGATTGGCACATGGAACCTTCAAGGATGACACTCTACCGATTCG
 
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rJMFF039P19+          GAAACACCTCGAGTAGCTCACTTTGGTACGAATTATCCTACTCAGAATCCAAGGGAAGGA
rJMFF038M03+          GAAACACCTCGAGTAGCTCACTTTGGTACGAATTATCCTACTCAGAATCCAAGGGAAGGA
rJMFF045G10+          GAAACACCTCGAGTAGCTCACTTTGGTACGAATTATCCTACTCAGAATCCAAGGGAAGGA
                      ____________________________________________________________
consensus             GAAACACCTCGAGTAGCTCACTTTGGTACGAATTATCCTACTCAGAATCCAAGGGAAGGA
 
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rJMFF039P19+          TTAGGAAGGGCGACAGAACTTGGCAGATAGCATTCGGCTCTGGGTTCAAGTGTAATAGTG
rJMFF038M03+          TTAGGAAGGGCGACAGAACTTGGCAGATAGCATTCGGCTCTGGGTTCAAGTGTAATAGTG
rJMFF045G10+          TTAGGAAGGGCGACAGAACTTGGCAGATAGCATTCGGCTCTGGGTTCAAGTGTAATAGTG
                      ____________________________________________________________
consensus             TTAGGAAGGGCGACAGAACTTGGCAGATAGCATTCGGCTCTGGGTTCAAGTGTAATAGTG
 
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rJMFF039P19+          CAGTTTGGAAAGCTTTAAGGACTATCAACCCCGCTAAGGAGAAAAATCCATGGATGGATG
rJMFF038M03+          CAGTTTGGAAAGCTTTAAGGACTATCAACCCCGCTAAGGAGAAAAATCCATGGATGGATG
rJMFF045G10+          CAGTTTGGAAAGCTTTAAGGACTATCAACCCCGCTAAGGAGAAAAATCCATGGATGGATG
                      ____________________________________________________________
consensus             CAGTTTGGAAAGCTTTAAGGACTATCAACCCCGCTAAGGAGAAAAATCCATGGATGGATG
 
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rJMFF039P19+          AAATTCACAACTTCCCGGTGGAAGTTCCAAAAGTCGCCAAATTGTAATAGTTCCAGGCAG
rJMFF038M03+          AAATTCACAACTTCCCGGTGGAAGTTCCAAAAGTCGCCAAATTGTAATAGTTCCAGGCAG
rJMFF045G10+          AAATTCACAACTTCCCGGTGGAAGTTCCAAAAGTCGCCAAATTGTAATAGTTCCAGGCAG
                      ____________________________________________________________
consensus             AAATTCACAACTTCCCGGTGGAAGTTCCAAAAGTCGCCAAATTGTAATAGTTCCAGGCAG
 
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rJMFF039P19+          AATCAAGGGAAGAAGCAGCATATAATTATTAGTCATTCTTTGATGGTTGTTGTGACTTGT
rJMFF038M03+          AATCAAGGGAAGAAGCAGCATATAATTATTAGTCATTCTTTGATGGTTGTTGTGACTTGT
rJMFF045G10+          AATCAAGGGAAGAAGCAGCATATAATTATTAGTCATTCTTTGATGGTTGTTGTGACTTGT
                      ____________________________________________________________
consensus             AATCAAGGGAAGAAGCAGCATATAATTATTAGTCATTCTTTGATGGTTGTTGTGACTTGT
 
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rJMFF039P19+          GAGAGGCTCCCGTGGGGGGATCATGGCCCGACGTTCTGTTTCTGCTTCAGAATTCCTGAT
rJMFF038M03+          GAGAGGCTCCCGTGGGGGGATCATGGCCCGACGTTCTGTTTCTGCTTCAGAATTCCTGAT
rJMFF045G10+          GAGAGGCTCCCGTGGGGGGATCATGGCCCGACGTTCTGTTTCTGCTTCAGAATTCCTGAT
                      ____________________________________________________________
consensus             GAGAGGCTCCCGTGGGGGGATCATGGCCCGACGTTCTGTTTCTGCTTCAGAATTCCTGAT
 
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rJMFF039P19+          TCCCCTTAGCCTTAGGGGCATTAACTTGTTAGTAGGTTGGGATTAAGTGGTTATTTTACT
rJMFF038M03+          TCCCCTTAGCCTTAGGGGCATTAACTTGTTAGTAGGTTGGGATTAAGTGGTTATTTTACT
rJMFF045G10+          TCCCCTTAGCCTTAGGGGCATTAACTTGTTAGTAGGTTGGGATTAAGTGGTTATTTTACT
                      ____________________________________________________________
consensus             TCCCCTTAGCCTTAGGGGCATTAACTTGTTAGTAGGTTGGGATTAAGTGGTTATTTTACT
 
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rJMFF039P19+          TAATTTTTCCAATTTTTATGTTGTACTATCTTATTGATTCATATGCTCTT          
rJMFF038M03+          TAATTTTTCCAATTTTTATGTTGTACTATCTTATTGATTCATATGCTCTT          
rJMFF045G10+          TAATTTTTCCAATTTTTATGTTGTACTATCTTATTGATTCATATGCTCTTTGGAACTGGA
                      ____________________________________________________________
consensus             TAATTTTTCCAATTTTTATGTTGTACTATCTTATTGATTCATATGCTCTTTGGAACTGGA
 
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rJMFF045G10+          ATCCCGGTTGTTGGATGGAAAAAAAAAAAAAAAAACTCTCCAGGTGGATCCGCCATAAGG
                      ____________________________________________________________
consensus             ATCCCGGTTGTTGGATGGAAAAAAAAAAAAAAAAACTCTCCAGGTGGATCCGCCATAAGG