clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF031L12 | Sequence | 544 | 007472 (5) | ref|XP_009794644.1| | 264 | PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Nicotiana sylvestris] | 369 | 004122 (4) | ref|XP_011043650.1| | 122 | PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Populus euphratica] |
JMFF041P24 | Sequence | 649 | 007472 (5) | ref|XP_009794644.1| | 314 | PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Nicotiana sylvestris] | 599 | 004122 (4) | emb|CDP10626.1| | 8e-74 | unnamed protein product [Coffea canephora] |
JMFF045F02 | Sequence | 611 | 007472 (5) | ref|XP_009794644.1| | 290 | PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Nicotiana sylvestris] | 646 | 004122 (4) | ref|XP_011043650.1| | 236 | PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Populus euphratica] |
JMSF026N21 | Sequence | 642 | 007472 (5) | ref|XP_009794644.1| | 311 | PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Nicotiana sylvestris] | 724 | 004122 (4) | emb|CDP10626.1| | 7e-109 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF026N21+ AAGACCCGGG
____________________________________________________________
consensus AAGACCCGGG
. : . : . : . : . : . :
rJMSF026N21+ CCATTGCNTGCTGGATCAAACAGGTTTTGGGCTGTAATACAAGGCAAGGGCGGGCACGCT
____________________________________________________________
consensus CCATTGCNTGCTGGATCAAACAGGTTTTGGGCTGTAATACAAGGCAAGGGCGGGCACGCT
. : . : . : . : . : . :
rJMSF026N21+ GCATCCCCACATAAAACCAGAGACCCTGTTCTTGCTCTATCTATGGCCATTCTTGCTCTC
____________________________________________________________
consensus GCATCCCCACATAAAACCAGAGACCCTGTTCTTGCTCTATCTATGGCCATTCTTGCTCTC
. : . : . : . : . : . :
rJMSF026N21+ CAACAGCTTGTTTCTCGAGAAACTGATCCCCTTGAGGCCAGGGTCGTTTCAATTGGATAC
rJMFF041P24+ GGTCGTTTCAATTGGATAC
rJMFF045F02+ GGTCGTTTCAATNGGATAC
____________________________________________________________
consensus CAACAGCTTGTTTCTCGAGAAACTGATCCCCTTGAGGCCAGGGTCGTTTCAATTGGATAC
. : . : . : . : . : . :
rJMSF026N21+ GTTGAGGCTGGTAAAGCCGGGAATGTGATACCAGAACAAGTAAAATTTGGTGGAACTTTT
rJMFF041P24+ GTTGAGGCTGGTAAAGCCGGGAATGTGATACCAGAACAAGTAAAATTTGGTGGAACTTTT
rJMFF045F02+ GTTGAGGCTGGTAAAGCCGGGAATGTGATACCAGAACAAGTAAAATTTGGTGGAACTNTT
____________________________________________________________
consensus GTTGAGGCTGGTAAAGCCGGGAATGTGATACCAGAACAAGTAAAATTTGGTGGAACTTTT
. : . : . : . : . : . :
rJMSF026N21+ CGCTACTTGACTTCTGAAGGTTCATCATATCTTCAGCAAAGAATCAAAGAGATCATCGAG
rJMFF041P24+ CGCTACTTGACTTCTGAAGGTTCATCATATCTTCAGCAAAGAATCAAAGAGATCATCGAG
rJMFF045F02+ CGCTACTTGACTTCTGAAGGTTCATCATATCTTCAGCAAAGAATCAAAGAGATCATCGAG
____________________________________________________________
consensus CGCTACTTGACTTCTGAAGGTTCATCATATCTTCAGCAAAGAATCAAAGAGATCATCGAG
. : . : . : . : . : . :
rJMSF026N21+ ACTCAAGCAGCAGTTCACCAATGCACTGCAACGGTTACTTTCTTGGAGGGTGACCGGACG
rJMFF041P24+ ACTCAAGCAGCAGTTCACCAATGCACTGCAACGGTTACTTTCTTGGAGGGTGACCGGACG
rJMFF045F02+ ACTCAAGCAGCAGTTCACCAATGCACTGCAACGGTTACTTTCTTGGAGGGTGACCGGACG
____________________________________________________________
consensus ACTCAAGCAGCAGTTCACCAATGCACTGCAACGGTTACTTTCTTGGAGGGTGACCGGACG
. : . : . : . : . : . :
rJMSF026N21+ CCCTACCCACCAACAGTTAACGATCAAGCAATGTATGAACACGCAAAGAAAGTTGGAGAA
rJMFF041P24+ CCCTACCCACCAACAGTTAACGATCAAGCAATGTATGAACACGCAAAGAAAGTTGGAGAA
rJMFF031L12+ CCTACCCACCCACAGTTAACGATCAAGCNATGTATGAACACGCAAAGAAAGTTGGAGAA
rJMFF045F02+ CCCTACCCACCAACAGTTAACGATCAAGCAATGTATGAACACGCAAAGAAAGTTGGAGAA
____________________________________________________________
consensus CCCTACCCACCAACAGTTAACGATCAAGCAATGTATGAACACGCAAAGAAAGTTGGAGAA
. : . : . : . : . : . :
rJMSF026N21+ ATCCTGCTCGGTGAGGAAAACGTGGAGCTTGCCCAGATCACCATGGGTGCAGAGGACTTC
rJMFF041P24+ ATCCTGCTCGGTGAGGAAAACGTGGAGCTTGCCCAGATCACCATGGGTGCAGAGGACTTC
rJMFF031L12+ ATCCTGCTCGGTGAGGAAAACGTGGAGCTTGCCCAGATCACCATGGGTGCAGAGGACTTC
rJMFF045F02+ ATCCTGCTCGGTGAGGAAAACGTGGAGCTTGCCCAGATCACCATGGGTGCAGAGGACTTC
____________________________________________________________
consensus ATCCTGCTCGGTGAGGAAAACGTGGAGCTTGCCCAGATCACCATGGGTGCAGAGGACTTC
. : . : . : . : . : . :
rJMSF026N21+ AGCTTCTATGCACAAAGAATGAAAGCTGCGTTCTTTGTAATTGGTGTAAGCAATGAGACG
rJMFF041P24+ AGCTTCTATGCACAAAGAATGAAAGCTGCGTTCTTTGTAATTGGTGTAAGCAATGAGACG
rJMFF031L12+ AGCTTCTATGCACAAAGAATGAAAGCTGCGTTCNTNGTAATTGGTGTAAGCAATGAGACG
rJMFF045F02+ AGCTTCTATGCACAAAGAATGAAAGCTGCGTTCTTTGTAATTGGTGTAAGCAATGAGACG
____________________________________________________________
consensus AGCTTCTATGCACAAAGAATGAAAGCTGCGTTCTTTGTAATTGGTGTAAGCAATGAGACG
. : . : . : . : . : . :
rJMSF026N21+ ATGAAGCCTTTGAAAGAGATACACAATCCTCACTTCACCATTGATGAACGCGCTCTACCC
rJMFF041P24+ ATGAAGCCTTTGAAAGAGATACACAATCCTCACTTCACCATTGATGAACGCGCTCTACCC
rJMFF031L12+ ATGAAGCCTTTGAAAGAGATACACAATCCTCACTTCACCATTGATGAACGCGCTNTACCC
rJMFF045F02+ ATGAAGCCTTTGAAAGAGATACACAATCCTCACTTCACCATTGATGAACGCGCTCTACCC
____________________________________________________________
consensus ATGAAGCCTTTGAAAGAGATACACAATCCTCACTTCACCATTGATGAACGCGCTCTACCC
. : . : . : . : . : . :
rJMSF026N21+ ATAGGAGCAGCTCTTCATGCTGCAGTTGCAATTACTTACTTGGATGGCCAAGTTGAGGAA
rJMFF041P24+ ATAGGAGCAGCTCTTCATGCTGCAGTTGCAATTACTTACTTGGATGGCCAAGTTGAGGAA
rJMFF031L12+ ATAGGAGCAGCTNTTCATGCTGCAGTTGCAATTACTTACTTGGATGGCCAAGTTGAGGAA
rJMFF045F02+ ATAGGAGCAGCTCTTCATGCTGCAGTTGCAATTACTTACTTGGATGGCCAAGTTGAGGAA
____________________________________________________________
consensus ATAGGAGCAGCTCTTCATGCTGCAGTTGCAATTACTTACTTGGATGGCCAAGTTGAGGAA
. : . : . : . : . : . :
rJMSF026N21+ CAATAGGTTTCCTTGGAGACTCGCCCAATCCTTAATGTTTTAC
rJMFF041P24+ CAATAGGTTTCCTTGGAGACTCGCCCAATCCTTAATGTTTTACAAGTTAGGATGTGAACA
rJMFF031L12+ CAATAGGTTTCCTTGGAGACTCGCCCAATCCTTAATNTTTTACAAGTTAGGATGTGANCA
rJMFF045F02+ CAATAGGTTTCCTTGGAGACTCGCCCAATCCTTAATGTTTTACAAGTTAGGATGTGAACA
____________________________________________________________
consensus CAATAGGTTTCCTTGGAGACTCGCCCAATCCTTAATGTTTTACAAGTTAGGATGTGAACA
. : . : . : . : . : . :
rJMFF041P24+ TACAAAATCATGAATAAACAACGTTGCATTACACC
rJMFF031L12+ TACAAAATCA
rJMFF045F02+ TACAAAATCATGAATAAACAACGTTGCATTACACCAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus TACAAAATCATGAATAAACAACGTTGCATTACACCAAAAAAAAAAAAAACTCTCCAGGGT