| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF043L03 | Sequence | 595 | 000248 (6) | ref|XP_006349488.1| | 7e-89 | PREDICTED: galactose oxidase-like [Solanum tuberosum] | 592 | 004109 (4) | ref|XP_009602919.1| | 2e-55 | PREDICTED: galactose oxidase [Nicotiana tomentosiformis] |
| JMFF043P18 | Sequence | 645 | 000248 (6) | ref|XP_006349488.1| | 2e-106 | PREDICTED: galactose oxidase-like [Solanum tuberosum] | 557 | 004109 (4) | ref|XP_009602919.1| | 1e-68 | PREDICTED: galactose oxidase [Nicotiana tomentosiformis] |
| JMFF044F21 | Sequence | 621 | 000248 (6) | ref|XP_006349488.1| | 5e-94 | PREDICTED: galactose oxidase-like [Solanum tuberosum] | 167 | 004109 (4) | |||
| JMFF044G11 | Sequence | 633 | 000248 (6) | ref|XP_006349488.1| | 1e-90 | PREDICTED: galactose oxidase-like [Solanum tuberosum] | 609 | 004109 (4) | ref|XP_009602919.1| | 1e-62 | PREDICTED: galactose oxidase [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF043P18+ TGCCGGACGGTAGGGTTTTACTGGCCGGAAGTAATCCGCATTACTTCTACA
rJMFF044G11+ CCGGAAGTAATCCGCATTACTTCTACA
____________________________________________________________
consensus TGCCGGACGGTAGGGTTTTACTGGCCGGAAGTAATCCGCATTACTTCTACA
. : . : . : . : . : . :
rJMFF043P18+ AATACAGAGGCCCATTCCCAACACAGCTGTCGATCGAAGCGTTTTCGCCGGAGTACTTGT
rJMFF044G11+ AATACAGAGGCCCATTCCCAACACAGCTGTCGATCGAAGCGTTTTCGCCGGAGTACTTGT
rJMFF043L03+ GGCCCATTCCCAACACAGCTGTCGATCGAAGCGTTTTCGCCGGAGTACTTGT
____________________________________________________________
consensus AATACAGAGGCCCATTCCCAACACAGCTGTCGATCGAAGCGTTTTCGCCGGAGTACTTGT
. : . : . : . : . : . :
rJMFF043P18+ CGGCTGACAGGGCTAACATTCGGCCTGTTCTAGTAGAGTTGCCGGAGAAGGTTGGGTACC
rJMFF044G11+ CGGCTGACAGGGCTAACATTCGGCCTGTTCTAGTAGAGTTGCCGGAGAAGGTTGGGTACC
rJMFF043L03+ CGGCTGACAGGGCTAACATTCGGCCTGTTCTAGTAGAGTTGCCGGAGAAGGTTGGGTACC
____________________________________________________________
consensus CGGCTGACAGGGCTAACATTCGGCCTGTTCTAGTAGAGTTGCCGGAGAAGGTTGGGTACC
. : . : . : . : . : . :
rJMFF043P18+ GGCAGGCTTTCGAGGCGGCGATCACGGTGGAACTGCCGGTAGTCGGGGTGGTAGAGGTGA
rJMFF044G11+ GGCAGGCTTTCGAGGCGGCGATCACGGTGGAACTGCCGGTAGTCGGGGTGGTAGAGGTGA
rJMFF043L03+ GGCAGGCTTTCGAGGCGGCGATCACGGTGGAACTGCCGGTAGTCGGGGTGGTAGAGGTGA
____________________________________________________________
consensus GGCAGGCTTTCGAGGCGGCGATCACGGTGGAACTGCCGGTAGTCGGGGTGGTAGAGGTGA
. : . : . : . : . : . :
rJMFF043P18+ ATTTCGCCAGCGCCCCATTCTCCACCCACTCGTTTTCTCAAGGCCAGAGGCTGGTAAAGC
rJMFF044G11+ ATTTCGCCAGCGCCCCATTCTCCACCCACTCGTTTTCTCAAGGCCAGAGGCTGGTAAAGC
rJMFF043L03+ ATTTCGCCAGCGCCCCATTCTCCACCCACTCGTTTTCTCAAGGCCAGAGGCTGGTAAAGC
____________________________________________________________
consensus ATTTCGCCAGCGCCCCATTCTCCACCCACTCGTTTTCTCAAGGCCAGAGGCTGGTAAAGC
. : . : . : . : . : . :
rJMFF043P18+ TACCGGTGACGAGTGCTATCCCTGATGGCACCGGGAAATACCGTATAGGTTGTACCGCGC
rJMFF044G11+ TACCGGTGACGAGTGCTATCCCTGATGGCACCGGGAAATACCGTATAGGTTGTACCGCGC
rJMFF043L03+ TACCGGTGACGAGTGCTATCCCTGATGGCACCGGGAAATACCGTATAGGTTGTACCGCGC
____________________________________________________________
consensus TACCGGTGACGAGTGCTATCCCTGATGGCACCGGGAAATACCGTATAGGTTGTACCGCGC
. : . : . : . : . : . :
rJMFF043P18+ CGCCGAATGCGATGGTGGCGCCGCCGGGTTATTACATGGTTTTCGCTGTAAACCAAGGGG
rJMFF044G11+ CGCCGAATGCGATGGTGGCGCCGCCGGGTTATTACATGGTTTTCGCTGTAAACCAAGGGG
rJMFF043L03+ CGCCGAATGCGATGGTGGCGCCGCCGGGTTATTACATGGTTTTCGCTGTAAACCAAGGGG
____________________________________________________________
consensus CGCCGAATGCGATGGTGGCGCCGCCGGGTTATTACATGGTTTTCGCTGTAAACCAAGGGG
. : . : . : . : . : . :
rJMFF043P18+ TGCCGAGCGTGGCACGGTGGGTCCAACTAAGTGCTTAAATATGTCTTTTAAATTATTCTG
rJMFF044G11+ TGCCGAGCGTGGCACGGTGGGTCCAACTAAGTGCTTAAATATGTCTTTTAAATTATTCTG
rJMFF043L03+ TGCCGAGCGTGGCACGGTGGGTCCAACTAAGTGCTTAAATATGTCTTTTAAATTATTCTG
____________________________________________________________
consensus TGCCGAGCGTGGCACGGTGGGTCCAACTAAGTGCTTAAATATGTCTTTTAAATTATTCTG
. : . : . : . : . : . :
rJMFF043P18+ CTTTTCTCTTT-TGGCTATTCTTTTAGCCTTTTAGATAAGTCCAGCATTATTTTAATTTA
rJMFF044G11+ CTTTTCTCTTT-TGGCTATTCTTTTAGCCTTTTAGATAAGTCCAGCATTATTTTAATTTA
rJMFF044F21+ TGGCTATTTTTTTAGCCTTTTAGATAAGTCCAGCATTATTTTAATTTA
rJMFF043L03+ CTTTTCTCTTTGTGGCTATTCTTTTAGCCTTTTAGATAAGTCCAGCATTATTTTAATTTA
____________________________________________________________
consensus CTTTTCTCTTT-TGGCTATTCTTTTAGCCTTTTAGATAAGTCCAGCATTATTTTAATTTA
. : . : . : . : . : . :
rJMFF043P18+ AAATTTAATAAGTAAATAAAGTGAAGG
rJMFF044G11+ AAATTTAATAAGTAAATAAAGTGAAGGAAATTTCAATTTTTTTTTTTTTTATATAACATT
rJMFF044F21+ AAATTTAATAAGTAAATAAAGTGAAGGAAATTTCAATTTTTTTTTTTTTTATATAACATT
rJMFF043L03+ AAATTTAATAAGTAAATAAAGTGAAGGAAATTTCAATTTTTTTTTTTTTTATATAACATT
____________________________________________________________
consensus AAATTTAATAAGTAAATAAAGTGAAGGAAATTTCAATTTTTTTTTTTTTTATATAACATT
. : . : . : . : . : . :
rJMFF044G11+ GTAAAATAGTATTTTAGCAATGTTAATAATATTTGTTTGGGCC
rJMFF044F21+ GTAAAATAGTATTTTAGCAATGTTAATAATATTTGTTTGGGCC
rJMFF043L03+ GTAAAATAGTATTTTAGCAATGTTAATAATATTTGTTTGGGCCTAAAAAAAAAAAAAAAA
____________________________________________________________
consensus GTAAAATAGTATTTTAGCAATGTTAATAATATTTGTTTGGGCCTAAAAAAAAAAAAAAAA