Contig 004100:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005M09Sequence507013272 (5)ref|XP_010318446.1|3e-80PREDICTED: 26S protease regulatory subunit 7 homolog A isoform X2 [Solanum lyco729004100 (9)emb|CAN80220.1|4e-120hypothetical protein VITISV_027893 [Vitis vinifera]
JMFF011A13Sequence513013272 (5)gb|KDO53742.1|2e-116hypothetical protein CISIN_1g014332mg [Citrus sinensis]729004100 (9)emb|CAN80220.1|2e-106hypothetical protein VITISV_027893 [Vitis vinifera]
JMFF018K20Sequence466004100 (9)emb|CAN80220.1|7e-26hypothetical protein VITISV_027893 [Vitis vinifera]807004100 (9)emb|CAN80220.1|2e-104hypothetical protein VITISV_027893 [Vitis vinifera]
JMFF022C14Sequence343004100 (9)
JMFF042L18Sequence645013272 (5)ref|XP_010318446.1|2e-112PREDICTED: 26S protease regulatory subunit 7 homolog A isoform X2 [Solanum lyco612004100 (9)emb|CAN80220.1|4e-68hypothetical protein VITISV_027893 [Vitis vinifera]
JMFN017P18Sequence606004100 (9)emb|CAN80220.1|7e-96hypothetical protein VITISV_027893 [Vitis vinifera]
JMSF009B23Sequence268013272 (5)ref|XP_006493392.1|3e-54PREDICTED: 26S protease regulatory subunit 7-like [Citrus sinensis]770004100 (9)gb|ABR25957.1|1e-13226S protease regulatory subunit 7 [Oryza sativa Indica Group]
JMSF011A09Sequence202013272 (5)ref|XP_010318446.1|3e-17PREDICTED: 26S protease regulatory subunit 7 homolog A isoform X2 [Solanum lyco779004100 (9)gb|ACU19621.1|5e-135unknown [Glycine max]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF018K20- AAAGAACCTTATC
                      ____________________________________________________________
consensus AAAGAACCTTATC
 
. : . : . : . : . : . :
JMFF018K20- ATCTCCTCTCTCTCTAAAAGTCATTCAGTCTCCACTGCTACAGAGTGAATCATGGCCGAC
                      ____________________________________________________________
consensus ATCTCCTCTCTCTCTAAAAGTCATTCAGTCTCCACTGCTACAGAGTGAATCATGGCCGAC
 
. : . : . : . : . : . :
JMFF018K20- GCTATCATCTCCATTGTTGTGGATCAGCTGTCCATCATCATCAAGGAACAAGCCCAGGAG
                      ____________________________________________________________
consensus GCTATCATCTCCATTGTTGTGGATCAGCTGTCCATCATCATCAAGGAACAAGCCCAGGAG
 
. : . : . : . : . : . :
JMFF018K20- CTAAGAGCAGCGTTGGGTGTGGAGAAGGAGATCAAAAACCTCTCATCAAAGCTCAACAAA
rJMFF018K20+ AAAGCTCAACAAA
                      ____________________________________________________________
consensus CTAAGAGCAGCGTTGGGTGTGGAGAAGGAGATCAAAAACCTCTCATCAAAGCTCAACAAA
 
. : . : . : . : . : . :
JMFF018K20- ATCAGGG-CGGTGTTGGTCGATGCAGAGAGGAGAAGCTTCAAGGAAGAGAGCGTCAAGCT
rJMFF018K20+ ATCAGGGCCGGTGTTGGTCGATGCAGAGAGGAGAAGCTTCAAGGAAGAGAGCGTCAAGCT
                      ____________________________________________________________
consensus ATCAGGGCCGGTGTTGGTCGATGCAGAGAGGAGAAGCTTCAAGGAAGAGAGCGTCAAGCT
 
. : . : . : . : . : . :
JMFF018K20- GTGGGTGGAAGAGATGAAAGCCTTCTGCTATGATGTGGAAGATGTTCTTGACGAGTGGAG
rJMFF005M09+ GGAG
rJMSF011A09+ GGAG
rJMSF009B23+ GGAG
rJMFF018K20+ GTGGGTGGAAGAGATGAAAGCCTTCTGCTATGATGTGGAAGATGTTCTTGACGAGTGGAG
rJMFF011A13+ AAGTAGATGNTATTGGGGGAG
                      ____________________________________________________________
consensus GTGGGTGGAAGAGATGAAAGCCTTCTGCTATGATGTGGAAGATGTTCTTGACGAGTGGAG
 
. : . : . : . : . : . :
JMFF018K20- CACGATTTGATGATGGTGTAGGGGGAGACAATGAAGTTCAACGAACTATGCTTGAAATTG
rJMFF005M09+ CACGATTTGATGATGGTGTAGGGGGAGACAATGAAGTTCAACGAACTATGCTTGAAATTG
rJMSF011A09+ CACGATTTGATGATGGTGTAGGGGGAGACAATGAAGTTCAACGAACTATGCTTGAAATTG
rJMSF009B23+ CACGATTTGATGATGGTGTAGGGGGAGACAATGAAGTTCAACGAACTATGCTTGAAATTG
JMFN017P18- TGAAGTTCAACGAACTATGCTTGAAATTG
rJMFF018K20+ CACGATTTGATGATGGTGTAGGGGGAGACAATGAAGTTCAACGAACTATGCTTGAAATTG
rJMFF011A13+ CACGATTTGATGATGGTGTAGGGGGAGACAATGAAGTTCAACGAACTATGCTTGAAATTG
                      ____________________________________________________________
consensus CACGATTTGATGATGGTGTAGGGGGAGACAATGAAGTTCAACGAACTATGCTTGAAATTG
 
. : . : . : . : . : . :
JMFF018K20- TGAACCAGCTTGATGGCTTTGATGCACGTGGGAATATTAAAGTACTCATGGCAACAAATA
rJMFF005M09+ TGAACCAGCTTGATGGCTTTGATGCACGTGGGAATATTAAAGTACTCATGGCAACAAATA
rJMSF011A09+ TGAACCAGCTTGATGGCTTTGATGCACGTGGGAATATTAAAGTACTCATGGCAACAAATA
rJMSF009B23+ TGAACCAGCTTGATGGCTTTGATGCACGTGGGAATATTAAAGTACTCATGGCAACAAATA
JMFN017P18- TGAACCAGCTTGATGGCTTTGATGCACGTGGGAATATTAAAGTACTCATGGCAACAAATA
rJMFF018K20+ TGAACCAGCTTGATGGCTTTGATGCACGTGGGAATATTAAAGTACTCATGGCAACAAATA
rJMFF011A13+ TGAACCAGCTNGATGGCTTTGATGCACGTGGGAATATTAAAGTACTCATGGCAACAAATA
rJMFF042L18+ CATGGCAACAAATA
                      ____________________________________________________________
consensus TGAACCAGCTTGATGGCTTTGATGCACGTGGGAATATTAAAGTACTCATGGCAACAAATA
 
. : . : . : . : . : . :
JMFF018K20- GACCTGACACCCTTGATCCAGCACTACTGCGTCC
rJMFF005M09+ GACCTGACACCCTTGATCCAGCACTACTGCGTCCTGGACGGTTGGATCGCAAAGTCGAGT
rJMSF011A09+ GACCTGACACCCTTGATCCAGCACTACTGCGTCCTGGACGGTTGGATCGCAAAGTCGAGT
rJMSF009B23+ GACCTGACACCCTTGATCCAGCACTACTGCGTCCTGGACGGTTGGATCGCAAAGTCGAGT
JMFN017P18- GACCTGACACCCTTGATCCAGCACTACTGCGTCCTGGACGGTTGGATCGCAAAGTCGAGT
rJMFF018K20+ GACCTGACACCCTTGATCCAGCACTACTGCGTCCTGGACGGTTGGATCGCAAAGTCGAGT
rJMFF011A13+ GACNTGACACCCTTGATCCAGCACTACTGCGTCCTGGACGGTTGGATCGCAAAGTCGAGT
rJMFF042L18+ GACCTGACACCC-TGATCCAGCACTACTGCGTCCTGGACGGTTGGATCGCAAAGTCGAGT
                      ____________________________________________________________
consensus GACCTGACACCCTTGATCCAGCACTACTGCGTCCTGGACGGTTGGATCGCAAAGTCGAGT
 
. : . : . : . : . : . :
rJMFF005M09+ TTGGTTTGCCTGATCTGGAAAGCAGGACACAGATTTTCAAGATTCACACGAGGACAATGA
rJMSF011A09+ TTGGTTTGCCTGATCTGGAAAGCAGGACACAGATTTTCAAGATTCACACGAGGACAATGA
rJMSF009B23+ TTGGTTTGCCTGATCTGGAAAGCAGGACACAGATTTTCAAGATTCACACGAGGACAATGA
JMFN017P18- TTGGTTTGCCTGATCTGGAAAGCAGGACACAGATTTTCAAGATTCACACGAGGACAATGA
rJMFF018K20+ TTGGTTTGCCTGATCTGGAAAGCAGGACACAGATTTTCAAGATTCACACGAGGACAATGA
rJMFF011A13+ TTGGTTTGCCTGATCTGGAAAGCAGGACACAGATTTTCAAGATTCACACGAGGACAATGA
rJMFF042L18+ TTGGTTTGCCTGATCTGGAAAGCAGGACACAGATTTTCAAGATTCACACGAGGACAATGA
                      ____________________________________________________________
consensus TTGGTTTGCCTGATCTGGAAAGCAGGACACAGATTTTCAAGATTCACACGAGGACAATGA
 
. : . : . : . : . : . :
rJMFF005M09+ ACTGTGAAAGAGACATCCGTTTTGAACTTCTAGCCCGTCTTTGTCCCAACTCTACCGGAG
rJMSF011A09+ ACTGTGAAAGAGACATCCGTTTTGAACTTCTAGCCCGTCTTTGTCCCAACTCTACCGGAG
rJMSF009B23+ ACTGTGAAAGAGACATCCGTTTTGAACTTCTAGCCCGTCTTTGTCCCAACTCTACCGGAG
JMFN017P18- ACTGTGAAAGAGACATCCGTTTTGAACTTCTAGCCCGTCTTTGTCCCAACTCTACCGGAG
rJMFF018K20+ ACTGTGAAAGAGACATCCGTTTTGAACTTCTAGCCCGTCTTTGTCCCAACTCTACCGGAG
rJMFF011A13+ ACTGTGAAAGAGACATCCGTTTTGAACTTCTAGCCCGTCTTTGTCCCAACTCTACCGGAG
rJMFF042L18+ ACTGTGAAAGAGACATCCGTTTTGAACTTCTAGCCCGTCTTTGTCCCAACTCTACCGGAG
                      ____________________________________________________________
consensus ACTGTGAAAGAGACATCCGTTTTGAACTTCTAGCCCGTCTTTGTCCCAACTCTACCGGAG
 
. : . : . : . : . : . :
rJMFF005M09+ CTGACATAAGAAGTGTTTGCACCGAGGCTGGAATGTACGCAATTCGAGCACGAAGAAAGA
rJMSF011A09+ CTGACATAAGAAGTGTTTGCACCGAGGCTGGAATGTACGCAATTCGAGCACGAAGAAAGA
rJMSF009B23+ CTGACATAAGAAGTGTTTGCACCGAGGCTGGAATGTACGCAATTCGAGCACGAAGAAAGA
JMFN017P18- CTGACATAAGAAGTGTTTGCACCGAGGCTGGAATGTACGCAATTCGAGCACGAAGAAAGA
rJMFF018K20+ CTGACATAAGAAGTGTTTGCACCGAGGCTGGAATGTACGCAATTCGAGCACGAAGAAAGA
rJMFF011A13+ CTGACATAAGAAGTGTTTGCACCGAGGCTGGAATGTACGCAATTCGAGCACGAAGAAAGA
rJMFF042L18+ CTGACATAAGAATTGTTTGCACCGAGGCTGGAATGTACGCAATTCGAGCACGAAGAAAGA
                      ____________________________________________________________
consensus CTGACATAAGAAGTGTTTGCACCGAGGCTGGAATGTACGCAATTCGAGCACGAAGAAAGA
 
. : . : . : . : . : . :
rJMFF005M09+ CTGTTACAGAGAAGGACTTTCTAGATGCCGTCAACAAAGTCATCAAAGGGTACCAGAAAT
rJMSF011A09+ CTGTTACAGAGAAGGACTTTCTAGATGCCGTCAACAAAGTCATCAAAGGGTACCAGAAAT
rJMSF009B23+ CTGTTACAGAGAAGGACTTTCTAGATGCCGTCAACAAAGTCATCAAAGGGTACCAGAAAT
JMFN017P18- CTGTTACAGAGAAGGACTTTCTAGATGCCGTCAACAAAGTCATCAAAGGGTACCAGAAAT
rJMFF018K20+ CTGTTACAGAGAAGGACTTTCTAGATGCCGTCAACAAAGTCATCAAAGGGTACCAGAAAT
rJMFF011A13+ CTGTTACAGAGAAGGACTTTCTAGATGCCGTCAACAAAGTCATCAAAGGGTACCAGAAAT
rJMFF022C14+ CCGTCAACAAAGTCATCAAAGGGTNCCNGAAAT
rJMFF042L18+ CTGTTACAGAGAAGGACTTTCTAGATGCCGTCAACAAAGTCATCAAAGGGTACCAGAAAT
                      ____________________________________________________________
consensus CTGTTACAGAGAAGGACTTTCTAGATGCCGTCAACAAAGTCATCAAAGGGTACCAGAAAT
 
. : . : . : . : . : . :
rJMFF005M09+ TCAGTGCCACTCCAAAATACATGGTCTACAATTGATCCTTCCTGCTGGTTTTTGTCACTT
rJMSF011A09+ TCAGTGCCACTCCAAAATACATGGTCTACAATTGATCCTTCCTGCTGGTTTTTGTCACTT
rJMSF009B23+ TTAGTGCCACTCCAAAATACATGGTCTACAATTGATCCTTCCTGCTGGTTTTTGTCACTT
JMFN017P18- TCAGTGCCACTCCAAAATACATGGTCTACAATTGATCCTTCCTGCTGGTTTTTGTCACTT
rJMFF018K20+ TCAGTGCCACTCCAAAATACATGGTCTACAATTGATCCTTCCTGCTGGTTTTTGTCACTT
rJMFF011A13+ TCAGTGCCACTCCAAAATACATGGTCTACAATTGATCCTTCCTGCTGGTTTTTGTCACTT
rJMFF022C14+ TCAGNGCCCCTCCAAAATACATGGTTTNCAATTGATTTTTCCTNCTGGTTTTTGTCCCTT
rJMFF042L18+ TCAGTGCCACTCCAAAATACATGGTCTACAATTGATCCTTCCTGCTGGTTTTTGTCACTT
                      ____________________________________________________________
consensus TCAGTGCCACTCCAAAATACATGGTCTACAATTGATCCTTCCTGCTGGTTTTTGTCACTT
 
. : . : . : . : . : . :
rJMFF005M09+ CTCATAAAAGAAATGAAGGGTTCTGGTCTGGTTCCAACTTGAAACTTATTAGCTGCATAG
rJMSF011A09+ CTCATAAAAGAAATGAAGGGTTCTGGTCTGGTTCCAACTTGAAACTTATTAGCTGCATAG
rJMSF009B23+ CTCATAAAAGAAATGAAGGGTTCTGGTCTGGTTCCAACTTGAAACTTATTAGCTGCATAG
JMFN017P18- CTCATAAAAGAAATGAAGGGTTCTGGTCTGGTTCCAACTTGAAACTTATTAGCTGCATAG
rJMFF018K20+ CTCATAAAAGAAATGAAGGGTTCTGGTCTGGTTCCAACTTGAAACTTATTAGCTGCATAG
rJMFF011A13+ CTCATAAAAGAAATGAAGGGTTCTGGTCTGGTTCCAACTTGAAACTTATTAGCTGCATAG
rJMFF022C14+ CCCATAAAAGAAA
rJMFF042L18+ CTCATAAAAGAAATGAAGGGTTCTGGTCTGGTTCCAACTTGAAACTTATTAGCTGCATAG
                      ____________________________________________________________
consensus CTCATAAAAGAAATGAAGGGTTCTGGTCTGGTTCCAACTTGAAACTTATTAGCTGCATAG
 
. : . : . : . : . : . :
rJMFF005M09+ CTGTCCCCAGACTTGTGCCAGTTCCCTCCCATAACAACTTGCAGTTACCTCTGAGTCTAT
rJMSF011A09+ CTGTCCCCAGACTTGTGCCAGTTCCCTCCCATAACAACTTGCAGTTACCTCTGAGTCTAT
rJMSF009B23+ CTGTCCCCAGACTTGTGCCAGTTCCCTCCCATAACAACTTGCAGTTACCTCTGAGTCTAT
JMFN017P18- CTGTCCCCAGACTTGTGCCAGTTCCCTCCCATAACAACTTGCAGTTACCTCTGAGTCTAT
rJMFF018K20+ CTGTCCCCAGACTTGTGCCAGTTCCCTCCCATAACAACTTGCAGTTACCTCTGAGTCTAT
rJMFF011A13+ CTGTCCCCAGACTTGTGCCAGTTCCCTCCCATAACAACTTGCAGTTACCTCTGAGTCTAT
rJMFF042L18+ CTGTCCCCAGACTTGTGCCAGTTCCCTCCCATAACAACTTGCAGTTACCTCTGAGTCTAT
                      ____________________________________________________________
consensus CTGTCCCCAGACTTGTGCCAGTTCCCTCCCATAACAACTTGCAGTTACCTCTGAGTCTAT
 
. : . : . : . : . : . :
rJMFF005M09+ CTGTTTCTGCAGTTTTTATATTCAGAAGCTCCATGTGTGAAGTCTCAACATTTCTTAA
rJMSF011A09+ CTGTTTCTGCAGTTTTTATATTCAGAAGCTCCATGTGTGAAGTCTCAAC
rJMSF009B23+ CTGTTTCTGCAGTTTTTATATTCAGAAGCTCCATGTGTGAAGTCTCAACATT
JMFN017P18- CTGTTTCTGCAGTTNTTATATTCAGAA
rJMFF018K20+ CTGTTTCTGCAGTTTTTATATTCAGAAGCTCCATGTGTGAAGTCTCAACATTTCTTAACT
rJMFF011A13+ CTGTTTCTGCAGTTTTTATATTCAGAAGCTCCATGTGTGAAGTCTCAACATTTCTTAACT
rJMFF042L18+ CTGTTTCTGCAGTTTTTATATTCAGAAGCTCCATGTGTGAAGTCTCAACATTTCTTAACT
                      ____________________________________________________________
consensus CTGTTTCTGCAGTTTTTATATTCAGAAGCTCCATGTGTGAAGTCTCAACATTTCTTAACT
 
. : . : . : . : . : . :
rJMFF018K20+ TTTCTTGAATTCAT
rJMFF011A13+ TTTCTTGAATTCATTGGATCTTCATTTTAAGACATGCTTATCAAGTTT
rJMFF042L18+ TTTCTTGAATTCA-TGGATCTTCATTTTAAGACATGCTTATCAAGTTTATAAATTTATAG
                      ____________________________________________________________
consensus TTTCTTGAATTCATTGGATCTTCATTTTAAGACATGCTTATCAAGTTTATAAATTTATAG