Contig 004096:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041O14Sequence639004627 (4)ref|XP_009796771.1|2e-31PREDICTED: DELLA protein GAI-like [Nicotiana sylvestris]389004096 (2)
JMFS039A12Sequence558004096 (2)ref|XP_009796771.1|5e-31PREDICTED: DELLA protein GAI-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS039A12- GAGAGAGAACTAGGAT
                      ____________________________________________________________
consensus GAGAGAGAACTAGGAT
 
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JMFS039A12- GAAATCGGCCGGGTTCGAACCGGTTCATCTCGGTTCAAACGCCTACAAGCAGGCGAGTAT
                      ____________________________________________________________
consensus GAAATCGGCCGGGTTCGAACCGGTTCATCTCGGTTCAAACGCCTACAAGCAGGCGAGTAT
 
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JMFS039A12- GCTCCTGGCGCTGTTCGCCGGCGGTGACGGCTATAGAGTGGAGGAGAACGACGGGTGTCT
                      ____________________________________________________________
consensus GCTCCTGGCGCTGTTCGCCGGCGGTGACGGCTATAGAGTGGAGGAGAACGACGGGTGTCT
 
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JMFS039A12- CATGCTAGGGTGGCACACCAGGTCGCTCATTGCCACGTCGGCCTGGCAGCTCAACGGCGG
                      ____________________________________________________________
consensus CATGCTAGGGTGGCACACCAGGTCGCTCATTGCCACGTCGGCCTGGCAGCTCAACGGCGG
 
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JMFS039A12- CGGCGGCGGCGATCCGTAGCGAGTCAACTCGTGAACAACGCATGAGTCAGCTCGGAGAAC
                      ____________________________________________________________
consensus CGGCGGCGGCGATCCGTAGCGAGTCAACTCGTGAACAACGCATGAGTCAGCTCGGAGAAC
 
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JMFS039A12- TCGGCACCCCGGTGACGGTAGTGATGTGCTGAGTTGGTTGGTTTGGTGGAAGTGAGAGAC
                      ____________________________________________________________
consensus TCGGCACCCCGGTGACGGTAGTGATGTGCTGAGTTGGTTGGTTTGGTGGAAGTGAGAGAC
 
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JMFS039A12- AGAGAAAGGGACGGACCAAAAATGAGTCAAATCCTGTCTTTTTACTTTTTTTTTTTTTTT
                      ____________________________________________________________
consensus AGAGAAAGGGACGGACCAAAAATGAGTCAAATCCTGTCTTTTTACTTTTTTTTTTTTTTT
 
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JMFS039A12- TACTTCAATCTAAAAGTCATCCTTTTTAGAATTTCTTTGGXXXXXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus TACTTCAATCTAAAAGTCATCCTTTTTAGAATTTCTTTGGNNNNNNNNNNNNNNNNNNNN
 
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JMFS039A12- XXXACCCTTTTGAAGGAGTGGTTTGATTTGGGTCGTTTACCTTATTTGGCTTAGGATTTC
rJMFF041O14+ ACCCCTTTGAAGGAGTGGTTTGATTTGGGTCGTTTACCTTATTTGGGTTAGGATTTC
                      ____________________________________________________________
consensus NNNACCCTTTTGAAGGAGTGGTTTGATTTGGGTCGTTTACCTTATTTGGGTTAGGATTTC
 
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JMFS039A12- TCCCTTTTGCTCTCCTGCCTAAGTGTGCTATAATCTCAACTTAAAAAGAAAAAAATAATA
rJMFF041O14+ TCCCTTTTGCTCTCCTGCCTAAGTGTGCTATAATCTCACCTTAAAAAGAAAAAAATAATA
                      ____________________________________________________________
consensus TCCCTTTTGCTCTCCTGCCTAAGTGTGCTATAATCTCACCTTAAAAAGAAAAAAATAATA
 
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JMFS039A12- AT
rJMFF041O14+ ATTATTTATGATTCAATGGCATGGAGAGTAAGTTAATAGGAGAACGTTTATGTTTGCTGT
                      ____________________________________________________________
consensus ATTATTTATGATTCAATGGCATGGAGAGTAAGTTAATAGGAGAACGTTTATGTTTGCTGT
 
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rJMFF041O14+ GAAGTCAATAAAAACATGTAATGTATGGCCAATCCCTCTTTTTATTAATTTCTAGCTTTT
                      ____________________________________________________________
consensus GAAGTCAATAAAAACATGTAATGTATGGCCAATCCCTCTTTTTATTAATTTCTAGCTTTT