Contig 004072:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032N11Sequence632004072 (10)ref|XP_010101033.1|9e-110Eukaryotic translation initiation factor 5A-4 [Morus notabilis] gb|EXB86681.1| E721004072 (10)ref|XP_010101033.1|5e-109Eukaryotic translation initiation factor 5A-4 [Morus notabilis] gb|EXB86681.1| E
JMFF035C10Sequence543004072 (10)gb|AIT51844.1|1e-109eukaryotic translation initiation factor 5A [Lindernia brevidens]694004072 (10)ref|XP_010101033.1|3e-109Eukaryotic translation initiation factor 5A-4 [Morus notabilis] gb|EXB86681.1| E
JMSF013M12Sequence503004072 (10)gb|AIT51844.1|1e-98eukaryotic translation initiation factor 5A [Lindernia brevidens]733004072 (10)ref|XP_010101033.1|5e-109Eukaryotic translation initiation factor 5A-4 [Morus notabilis] gb|EXB86681.1| E
JMSF016C19Sequence414004072 (10)gb|AFK47838.1|6e-77unknown [Medicago truncatula] gb|KEH33401.1| eukaryotic translation initiation f711004072 (10)ref|XP_010101033.1|4e-109Eukaryotic translation initiation factor 5A-4 [Morus notabilis] gb|EXB86681.1| E
JMSF024G22Sequence709004072 (10)ref|XP_010101033.1|2e-109Eukaryotic translation initiation factor 5A-4 [Morus notabilis] gb|EXB86681.1| E649004072 (10)ref|XP_010101033.1|2e-109Eukaryotic translation initiation factor 5A-4 [Morus notabilis] gb|EXB86681.1| E

Alignment

This contig is upended


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JMSF016C19-              GGTATCGCCTCCTCGCCCCTACTTCCTACGTTTTTCTACCTTCGTCGCCGGATTTTA
JMSF013M12-                 ATCGCCTCCTCGCCCCTACTTCCTACGTTTTTCTACCTTCGTCGCCGGATTTTA
rJMSF013M12+                ATCGCCTCCTCGCCCCTACTTCCTACGTTTTTCTACCTTCGTCGCCGGATTTTA
JMFF035C10-                   CGCCTCCTCGCCCCTACTTCCTACGTTTTTCTACCTTCGTCGCCGGATTTTA
JMFF032N11-                 ATCGCCTCCTCGCCCCTACTTCCTACGTTTTTCTACCTTCGTCGCCGGATTTTA
rJMSF024G22+                                                  ACCTTCGTCGCCGGATTTTA
rJMFF032N11+                                                  ACCTTCGTCGCCGGATTTTA
rJMSF016C19+                                                     TTCGTCGCCGGATTTTA
rJMFF035C10+                                       TACGTTTTTCTACCTTCGTCGCCGGATTTTA
                      ____________________________________________________________
consensus                GGTATCGCCTCCTCGCCCCTACTTCCTACGTTTTTCTACCTTCGTCGCCGGATTTTA
 
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JMSF016C19-           GCACGGAAAACATGTCGGACGAGGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCTT
JMSF013M12-           GCACGGAAAACATGTCGGACGAGGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCTT
rJMSF013M12+          GCACGGAAAACATGTCGGACGAGGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCTT
JMFF035C10-           GCACGGAAAACATGTCGGACGAGGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCTT
JMFF032N11-           GCACGGAAAACATGTCGGACGAGGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCTT
rJMSF024G22+          GCACGGAAAACATGTCGGACGAGGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCTT
JMSF024G22-                     CATGTCGGACGAGGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCTT
rJMFF032N11+          GCACGGAAAACATGTCGGACGAGGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCTT
rJMSF016C19+          GCACGGAAAACATGTCGGACGAGGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCTT
rJMFF035C10+          GCACGGAAAACATGTCGGACGAGGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCTT
                      ____________________________________________________________
consensus             GCACGGAAAACATGTCGGACGAGGAGCATCATTTTGAGTCCAAGGCCGACGCCGGAGCTT
 
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JMSF016C19-           CTAAGACTTATCCTCAGCAGGCTGGCACTATCCGTAAGAACGGTTACATTGTCATCAAGA
JMSF013M12-           CTAAGACTTATCCTCAGCAGGCTGGCACTATCCGTAAGAACGGTTACATTGTCATCAAGA
rJMSF013M12+          CTAAGACTTATCCTCAGCAGGCTGGCACTATCCGTAAGAACGGTTACATTGTCATCAAGA
JMFF035C10-           CTAAGACTTATCCTCAGCAGGCTGGCACTATCCGTAAGAACGGTTACATTGTCATCAAGA
JMFF032N11-           CTAAGACTTATCCTCAGCAGGCTGGCACTATCCGTAAGAACGGTTACATTGTCATCAAGA
rJMSF024G22+          CTAAGACTTATCCTCAGCAGGCTGGCACTATCCGTAAGAACGGTTACATTGTCATCAAGA
JMSF024G22-           CTAAGACTTATCCTCAGCAGGCTGGCACTATCCGTAAGAACGGTTACATTGTCATCAAGA
rJMFF032N11+          CTAAGACTTATCCTCAGCAGGCTGGCACTATCCGTAAGAACGGTTACATTGTCATCAAGA
rJMSF016C19+          CTAAGACTTATCCTCAGCAGGCTGGCACTATCCGTAAGAACGGTTACATTGTCATCAAGA
rJMFF035C10+          CTAAGACTTATCCTCAGCAGGCTGGCACTATCCGTAAGAACGGTTACATTGTCATCAAGA
                      ____________________________________________________________
consensus             CTAAGACTTATCCTCAGCAGGCTGGCACTATCCGTAAGAACGGTTACATTGTCATCAAGA
 
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JMSF016C19-           ATCGTCCCTGCAAGGTTGTGGAGGTTTCCACATCTAAGACTGGCAAGCACGGTCATGCCA
JMSF013M12-           ATCGTCCCTGCAAGGTTGTGGAGGTTTCCACATCTAAGACTGGCAAGCACGGTCATGCCA
rJMSF013M12+          ATCGTCCCTGCAAGGTTGTGGAGGTTTCCACATCTAAGACTGGCAAGCACGGTCATGCCA
JMFF035C10-           ATCGTCCCTGCAAGGTTGTGGAGGTTTCCACATCTAAGACTGGCAAGCACGGTCATGCCA
JMFF032N11-           ATCGTCCCTGCAAGGTTGTGGAGGTTTCCACATCTAAGACTGGCAAGCACGGTCATGCCA
rJMSF024G22+          ATCGTCCCTGCAAGGTTGTGGAGGTTTCCACATCTAAGACTGGCAAGCACGGTCATGCCA
JMSF024G22-           ATCGTCCCTGCAAGGTTGTGGAGGTTTCCACATCTAAGACTGGCAAGCACGGTCATGCCA
rJMFF032N11+          ATCGTCCCTGCAAGGTTGTGGAGGTTTCCACATCTAAGACTGGCAAGCACGGTCATGCCA
rJMSF016C19+          ATCGTCCCTGCAAGGTTGTGGAGGTTTCCACATCTAAGACTGGCAAGCACGGTCATGCCA
rJMFF035C10+          ATCGTCCCTGCAAGGTTGTGGAGGTTTCCACATCTAAGACTGGCAAGCACGGTCATGCCA
                      ____________________________________________________________
consensus             ATCGTCCCTGCAAGGTTGTGGAGGTTTCCACATCTAAGACTGGCAAGCACGGTCATGCCA
 
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JMSF016C19-           AGTGTCACTTTGTTGCGATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTTCCTT
JMSF013M12-           AGTGTCACTTTGTTGCGATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTTCCTT
rJMSF013M12+          AGTGTCACTTTGTTGCGATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTTCCTT
JMFF035C10-           AGTGTCACTTTGTTGCGATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTTCCTT
JMFF032N11-           AGTGTCACTTTGTTGCGATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTTCCTT
rJMSF024G22+          AGTGTCACTTTGTTGCGATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTTCCTT
JMSF024G22-           AGTGTCACTTTGTTGCGATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTTCCTT
rJMFF032N11+          AGTGTCACTTTGTTGCGATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTTCCTT
rJMSF016C19+          AGTGTCACTTTGTTGCGATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTTCCTT
rJMFF035C10+          AGTGTCACTTTGTTGCGATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTTCCTT
                      ____________________________________________________________
consensus             AGTGTCACTTTGTTGCGATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTTCCTT
 
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JMSF016C19-           CTTCTCACAATTGTGATGTTCCCCATGTTTCCCGTACAGATTATCAGCTTATTGATATCT
JMSF013M12-           CTTCTCACAATTGTGATGTTCCCCATGTTTCCCGTACAGATTATCAGCTTATTGATATCT
rJMSF013M12+          CTTCTCACAATTGTGATGTTCCCCATGTTTCCCGTACAGATTATCAGCTTATTGATATCT
JMFF035C10-           CTTCTCACAATTGTGATGTTCCCCATGTTTCCCGTACAGATTATCAGCTTATTGATATCT
JMFF032N11-           CTTCTCACAATTGTGATGTTCCCCATGTTTCCCGTACAGATTATCAGCTTATTGATATCT
rJMSF024G22+          CTTCTCACAATTGTGATGTTCCCCATGTTTCCCGTACAGATTATCAGCTTATTGATATCT
JMSF024G22-           CTTCTCACAATTGTGATGTTCCCCATGTTTCCCGTACAGATTATCAGCTTATTGATATCT
rJMFF032N11+          CTTCTCACAATTGTGATGTTCCCCATGTTTCCCGTACAGATTATCAGCTTATTGATATCT
rJMSF016C19+          CTTCTCACAATTGTGATGTTCCCCATGTTTCCCGTACAGATTATCAGCTTATTGATATCT
rJMFF035C10+          CTTCTCACAATTGTGATGTTCCCCATGTTTCCCGTACAGATTATCAGCTTATTGATATCT
                      ____________________________________________________________
consensus             CTTCTCACAATTGTGATGTTCCCCATGTTTCCCGTACAGATTATCAGCTTATTGATATCT
 
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JMSF016C19-           CAGAGGATGGATTTGTGAGTTTGCTCACCGATAATGGAAACACTAAGGATGACCTTA   
JMSF013M12-           CAGAGGATGGATTTGTGAGTTTGCTCACCGATAATGGAAACACTAAGGATGACCTTAGGC
rJMSF013M12+          CAGAGGATGGATTTGTGAGTTTGCTCACCGATAATGGAAACACTAAGGATGACCTTAGGC
JMFF035C10-           CAGAGGATGGATTTGTGAGTTTGCTCACCGATAATGGAAACACTAAGGATGACCTTAGGC
JMFF032N11-           CAGAGGATGGATTTGTGAGTTTGCTCACCGATAATGGAAACACTAAGGATGACCTTAGGC
rJMSF024G22+          CAGAGGATGGATTTGTGAGTTTGCTCACCGATAATGGAAACACTAAGGATGACCTTAGGC
JMSF024G22-           CAGAGGATGGATTTGTGAGTTTGCTCACCGATAATGGAAACACTAAGGATGACCTTAGGC
rJMFF032N11+          CAGAGGATGGATTTGTGAGTTTGCTCACCGATAATGGAAACACTAAGGATGACCTTAGGC
rJMSF016C19+          CAGAGGATGGATTTGTGAGTTTGCTCACCGATAATGGAAACACTAAGGATGACCTTAGGC
rJMFF035C10+          CAGAGGATGGATTTGTGAGTTTGCTCACCGATAATGGAAACACTAAGGATGACCTTAGGC
                      ____________________________________________________________
consensus             CAGAGGATGGATTTGTGAGTTTGCTCACCGATAATGGAAACACTAAGGATGACCTTAGGC
 
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JMSF013M12-           TTCCAACTGATGAATCTTTGCTTACACAGATCAAAGATGGATTTGGTGAGGGGAAGGACC
rJMSF013M12+          TTCCAACTGATGAATCTTTGCTTACACAGATCAAAGATGGATTTGGTGAGGGGAAGGACC
JMFF035C10-           TTCCAACTGATGAATCTTTGCTTACACAGATCAAAGATGGATTTGGTGAGGGGAAGGACC
JMFF032N11-           TTCCAACTGATGAATCTTTGCTTACACAGATCAAAGATGGATTTGGTGAGGGGAAGGACC
rJMSF024G22+          TTCCAACTGATGAATCTTTGCTTACACAGATCAAAGATGGATTTGGTGAGGGGAAGGACC
JMSF024G22-           TTCCAACTGATGAATCTTTGCTTACACAGATCAAAGATGGATTTGGTGAGGGGAAGGACC
rJMFF032N11+          TTCCAACTGATGAATCTTTGCTTACACAGATCAAAGATGGATTTGGTGAGGGGAAGGACC
rJMSF016C19+          TTCCAACTGATGAATCTTTGCTTACACAGATCAAAGATGGATTTGGTGAGGGGAAGGACC
rJMFF035C10+          TTCCAACTGATGAATCTTTGCTTACACAGATCAAAGATGGATTTGGTGAGGGGAAGGACC
                      ____________________________________________________________
consensus             TTCCAACTGATGAATCTTTGCTTACACAGATCAAAGATGGATTTGGTGAGGGGAAGGACC
 
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JMSF013M12-           TTGTTGTGTCTGTGATGTCTGCCATGGG                                
rJMSF013M12+          TTGTTGTGTCTGTGATGTCTGCCATGGGTGAGGAGCAGATCTGTGC              
JMFF035C10-           TTGTTGTGTCTGTGATGTCTGCCATGGGTGAGGAGCAGATCTGTGCCCTCAAGGATATCG
JMFF032N11-           TTGTTGTGTCTGTGATGTCTGCCATGGGTGAGGAGCAGATCTGTGCCCTCAAGGATATCG
rJMSF024G22+          TTGTTGTGTCTGTGATGTCTGCCATGGGTGAGGAGCAGATCTGTGCCCTCAAGGATATCG
JMSF024G22-           TTGTTGTGTCTGTGATGTCTGCCATGGGTGAGGAGCAGATCTGTGCCCTCAAGGATATCG
rJMFF032N11+          TTGTTGTGTCTGTGATGTCTGCCATGGGTGAGGAGCAGATCTGTGC              
rJMSF016C19+          TTGTTGTGTCTGTGATGTCTGCCATGGGTGAGGAGCAGATCTGTGC              
rJMFF035C10+          TTGTTGTGTCTGTGATGTCTGCCATGGGTGAGGAGCAGATCTGTGCCCTCAAGGATATCG
                      ____________________________________________________________
consensus             TTGTTGTGTCTGTGATGTCTGCCATGGGTGAGGAGCAGATCTGTGCCCTCAAGGATATCG
 
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JMFF035C10-           GCCCGAAGA                                                   
JMFF032N11-           GCCCGAAGAACTAGAAGAATATACCGTGGACAACTTTGTTGAAGAATTTCTCCTACGGGA
rJMSF024G22+          GCCCGAAGAACTAGAAGAATATACCGTGGACAACTTTGTTGAAGAATTTCTCCTACGGGA
JMSF024G22-           GCCCGAAGAACTAGAAGAATATACCGTGGACAACTTTGTTGAAGAATTTCTCCTACGGGA
rJMFF035C10+          GCCCGAAGAACTAGAAGAATATACCGTGGACAACTTTGTTGAAGAATTTCTCCTACGGGA
                      ____________________________________________________________
consensus             GCCCGAAGAACTAGAAGAATATACCGTGGACAACTTTGTTGAAGAATTTCTCCTACGGGA
 
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JMFF032N11-           TTTTACTTGTTTCGATATATTTCTATCTTAATTTTTAG                      
rJMSF024G22+          TTTTACTTGTTTCGATATATTTCTATCTTAATTTTTAGGATTATGTGAGTTTAAGAATTT
JMSF024G22-           TTTTACTTGTTTCGATATATTTCTATCTTAATTTTTAGGATTATGTGAGTTTAAAAATTT
rJMFF035C10+          TTTTACTTGTTTCGATATATTTCTATCTTAATTTTTAGGATTATGTGAGTTTAAGAATTT
                      ____________________________________________________________
consensus             TTTTACTTGTTTCGATATATTTCTATCTTAATTTTTAGGATTATGTGAGTTTAAGAATTT
 
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rJMSF024G22+          TGGTCTCTCTATGAGTATTCGGTTCGATT                               
rJMFF035C10+          TGGTCTCTCTATGAGTATTCGGTTCGATTCATGTGCTATTTAGTTATCTTTTTATGTGAT
                      ____________________________________________________________
consensus             TGGTCTCTCTATGAGTATTCGGTTCGATTCATGTGCTATTTAGTTATCTTTTTATGTGAT