| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016C01 | Sequence | 550 | 004056 (9) | ref|XP_009592812.1| | 3e-82 | PREDICTED: tryptophan synthase alpha chain [Nicotiana tomentosiformis] | 800 | 004056 (9) | ref|XP_009592812.1| | 1e-133 | PREDICTED: tryptophan synthase alpha chain [Nicotiana tomentosiformis] |
| JMFF031L01 | Sequence | 521 | 004056 (9) | ref|XP_006361888.1| | 224 | PREDICTED: tryptophan synthase alpha chain-like [Solanum tuberosum] | 671 | 004056 (9) | ref|XP_006361888.1| | 268 | PREDICTED: tryptophan synthase alpha chain-like [Solanum tuberosum] |
| JMSF013O23 | Sequence | 241 | 004056 (9) | gb|EYU46516.1| | 5e-05 | hypothetical protein MIMGU_mgv1a010511mg [Erythranthe guttata] | 730 | 004056 (9) | ref|XP_009592812.1| | 3e-125 | PREDICTED: tryptophan synthase alpha chain [Nicotiana tomentosiformis] |
| JMSF017N24 | Sequence | 246 | 004056 (9) | ref|XP_006361888.1| | 74.3 | PREDICTED: tryptophan synthase alpha chain-like [Solanum tuberosum] | 767 | 004056 (9) | ref|XP_009592812.1| | 4e-113 | PREDICTED: tryptophan synthase alpha chain [Nicotiana tomentosiformis] |
| JMSF022A19 | Sequence | 502 | 004056 (9) | ref|XP_004230160.1| | 9e-53 | PREDICTED: tryptophan synthase alpha chain [Solanum lycopersicum] | |||||
This contig is upended
. : . : . : . : . : . :
JMSF013O23- GGTCACATCATCCTCCTCTTCTTCATTTCCATGGCGGCCTCTCTGAAAGCTACCCACTT
JMSF017N24- GCTACCCACTT
JMFF031L01- ACATCATCCTCCTCTTCTTCATTTCCATGGCGGCCTCTCTGAAAGCTACCCACTT
JMFF016C01- ACTT
____________________________________________________________
consensus GGTCACATCATCCTCCTCTTCTTCATTTCCATGGCGGCCTCTCTGAAAGCTACCCACTT
. : . : . : . : . : . :
JMSF013O23- CCTTCAACTAAAGAATAGGCAAGCCCGCCATTCCTTCCTTACCCATTCTCCGGAAAGGCT
JMSF017N24- CCTTCAACTAAAGAATAGGCAAGCCCGCCATTCCTTCCTTACCCATTCTCCGGAAAGGCT
JMFF031L01- CCTTCAACTAAAGAATAGGCAAGCCCGCCATTCCTTCCTTACCCATTCTCCGGAAAGGCT
JMFF016C01- CCTTCAACTAAAGAATAGGCAAGCCCGCCATTCCTTCCTTACCCATTCTCCGGAAAGGCT
____________________________________________________________
consensus CCTTCAACTAAAGAATAGGCAAGCCCGCCATTCCTTCCTTACCCATTCTCCGGAAAGGCT
. : . : . : . : . : . :
JMSF013O23- CACTTTTCCGCGAAAACCACCCATGGCTGCTCTCACCGCCGCTCCGCTTGCCGCCGGCCT
JMSF017N24- CACTTTTCCGCGAAAACCACCCATGGCTGCTCTCACCGCCGCTCCGCTTGCCGCCGGCCT
JMFF031L01- CACTTTTCCGCGAAAACCACCCATGGCTGCTCTCACCGCCGCTCCGCTTGCCGCCGGCCT
JMFF016C01- CACTTTTCCGCGAAAACCACCCATGGCTGCTCTCACCGCCGCTCCGCTTGCCGCCGGCCT
____________________________________________________________
consensus CACTTTTCCGCGAAAACCACCCATGGCTGCTCTCACCGCCGCTCCGCTTGCCGCCGGCCT
. : . : . : . : . : . :
JMSF013O23- TTCTGAAACTTTCACCAGCCTCAGGCAACAAGGCAAAGTGGCATTGATTCCATACATCAC
JMSF017N24- TTCTGAAACTTTCACCAGCCTCAGGCAACAAGGCAAAGTGGCATTGATTCCATACATCAC
JMFF031L01- TTCTGAAACTTTCACCAGCCTCAGGCAACAAGGCAAAGTGGCATTGATTCCATACATCAC
JMFF016C01- TTCTGAAACTTTCACCAGCCTCAGGCAACAAGGCAAAGTGGCATTGATTCCATACATCAC
____________________________________________________________
consensus TTCTGAAACTTTCACCAGCCTCAGGCAACAAGGCAAAGTGGCATTGATTCCATACATCAC
. : . : . : . : . : . :
JMSF013O23- GG
JMSF017N24- GGCGGGTGATCCAAACCTAGCAACCACTGCAGAAGCTCTTAAAATACTTGATTC
JMFF031L01- GGCGGGTGATCCAAACCTAGCAACCACTGCAGAAGCTCTTAAAATACTTGATTCTTGTGG
JMFF016C01- GGCGGGTGATCCAAACCTAGCAACCACTGCAGAAGCTCTTAAAATACTTGATTCTTGTGG
rJMSF013O23+ GG
rJMFF016C01+ CCACTGCAGAAGCTCTTAAAATACTTGATTCTTGTGG
____________________________________________________________
consensus GGCGGGTGATCCAAACCTAGCAACCACTGCAGAAGCTCTTAAAATACTTGATTCTTGTGG
. : . : . : . : . : . :
JMFF031L01- TTCAGATATAATTGAGCTTGGAGTTCCTTATTCTGATCCACTTGCTGATGGGCCAGTTAT
JMFF016C01- TTCAGATATAATTGAGCTTGGAGTTCCTTATTCTGATCCACTTGCTGATGGGCCAGTTAT
rJMSF013O23+ TTCAGATATAATTGAGCTTGGAGTTCCTTATTCTGATCCACNTGCTGATGGGCCAGTTAT
rJMFF016C01+ TTCAGATATAATTGAGCTTGGAGTTCCTTATTCTGATCCACTTGCTGATGGGCCAGTTAT
rJMSF017N24+ CTGATGGGCCAGTTAT
____________________________________________________________
consensus TTCAGATATAATTGAGCTTGGAGTTCCTTATTCTGATCCACTTGCTGATGGGCCAGTTAT
. : . : . : . : . : . :
JMFF031L01- ACAGGCTGCCGCTACTCGTTCGCTGCAGGGAGGAACCAATTTTGATAAAATAATCGCAAT
JMFF016C01- ACAGGCTGCCGCTACTCGTTCGCTGCAGGGAGGAACCAATTTTGATAAAATAATCGCAAT
rJMSF013O23+ ACAGGCTGCCGCTACTCGTTCGCTGCAGGGAGGAACCAATTTTGATAAAATAATCGCAAT
rJMFF016C01+ ACAGGCTGCCGCTACTCGTTCGCTGCAGGGAGGAACCAATTTTGATAAAATAATCGCAAT
rJMSF017N24+ ACAGGCTGCCGCTACTCGTTCGCTGCAGGGAGGAACCAATTTTGATAAAATAATCGCAAT
____________________________________________________________
consensus ACAGGCTGCCGCTACTCGTTCGCTGCAGGGAGGAACCAATTTTGATAAAATAATCGCAAT
. : . : . : . : . : . :
JMFF031L01- GTTAAAGGATGTGACGCCTCAATTATCCTGTCCGATTGCCTTGTTCACCTATTATAACCC
JMFF016C01- GTTAAAGGATGTGACGCCTCAATTATCCTGTCCGATTGCCTTGTTCACCTATTATAACCC
rJMSF013O23+ GTTAAAGGATGTGACGCCTCAATTATCCTGTCCGATTGCCTTGTTCACCTATTATAACCC
rJMFF016C01+ GTTAAAGGATGTGACGCCTCAATTATCCTGTCCGATTGCCTTGTTCACCTATTATAACCC
rJMSF017N24+ GTTAAAGGATGTGACGCCTCAATTATCCTGTCCGATTGCCTTGTTCACCTATTATAACCC
rJMFF031L01+ TATTATAACCC
____________________________________________________________
consensus GTTAAAGGATGTGACGCCTCAATTATCCTGTCCGATTGCCTTGTTCACCTATTATAACCC
. : . : . : . : . : . :
JMFF031L01- TATACTTAAGCGTGGAGTTGAAAAGTTCATGGACACTGTAAAAGAT
JMFF016C01- TATACTTAAGCGTGGAGTTGAAAAGTTCATGGACACTGTAAAAGATGCCGGAGTACATGG
rJMSF013O23+ TATACTTAAGCGTGGAGTTGAAAAGTTCATGGACACTGTAAAAGATGCCGGAGTACATGG
rJMFF016C01+ TATACTTAAGCGTGGAGTTGAAAAGTTCATGGACACTGTAAAAGATGCCGGAGTACATGG
rJMSF017N24+ TATACTTAAGCGTGGAGTTGAAAAGTTCATGGACACTGTAAAAGATGCCGGAGTACATGG
rJMFF031L01+ TATACTTAAGCGTGGAGTTGAAAAGTTCATGGACACTGTAAAAGATGCCGGAGTACATGG
____________________________________________________________
consensus TATACTTAAGCGTGGAGTTGAAAAGTTCATGGACACTGTAAAAGATGCCGGAGTACATGG
. : . : . : . : . : . :
JMFF016C01- ACTTGTGGTTCCTGATGTCCCTCTTGAGGAAACTGAAATTTTGAGAAAGGAAGCTTCTAA
rJMSF013O23+ ACTTGTGGTTCCTGATGTCCCTCTTGAGGAAACTGAAATTTTGAGAAAGGAAGCTTCTAA
rJMFF016C01+ ACTTGTGGTTCCTGATGTCCCTCTTGAGGAAACTGAAATTTTGAGAAAGGAAGCTTCTAA
rJMSF017N24+ ACTTGTGGTTCCTGATGTCCCTCTTGAGGAAACTGAAATTTTGAGAAAGGAAGCTTCTAA
rJMFF031L01+ ACTTGTGGTTCCTGATGTCCCTCTTGAGGAAACTGAAATTTTGAGAAAGGAAGCTTCTAA
____________________________________________________________
consensus ACTTGTGGTTCCTGATGTCCCTCTTGAGGAAACTGAAATTTTGAGAAAGGAAGCTTCTAA
. : . : . : . : . : . :
JMFF016C01- GAAAAA
rJMSF013O23+ GAAAAAGATTGAATTGGTTTTGCTCACAACACCCACTACTCCAACAGCTCGGATGAAATC
rJMFF016C01+ GAAAAAGATTGAATTGGTTTTGCTCACAACACCCACTACTCCAACAGCTCGGATGAAATC
rJMSF017N24+ GAAAAAGATTGAATTGGTTTTGCTCACAACACCCACTACTCCAACAGCTCGGATGAAATC
rJMSF022A19+ ATTGGTTTTGNTCACAACACCCACTACTCCAACAGCTCGGATGAAATC
rJMFF031L01+ GAAAAAGATTGAATTGGTTTTGCTCACAACACCCACTACTCCAACAGCTCGGATGAAATC
____________________________________________________________
consensus GAAAAAGATTGAATTGGTTTTGCTCACAACACCCACTACTCCAACAGCTCGGATGAAATC
. : . : . : . : . : . :
rJMSF013O23+ AATTGTTGAATGTTCGGAGGGATTTGTATACCTTGTGAGCTCGGTTGGAGTTACTGGAGC
rJMFF016C01+ AATTGTTGAATGTTCGGAGGGATTTGTATACCTTGTGAGCTCGGTTGGAGTTACTGGAGC
rJMSF017N24+ AATTGTTGAATGTTCGGAGGGATTTGTATACCTTGTGAGCTCGGTTGGAGTTACTGGAGC
rJMSF022A19+ AATTGTNGAATGTTCGGAGGGATTTGTATACCTCGTGAGCTCGGTTGGAGTTACTGGAGC
rJMFF031L01+ AATTGTTGAATGTTCGGAGGGATTTGTATACCTTGTGAGCTCGGTTGGAGTTACTGGAGC
____________________________________________________________
consensus AATTGTTGAATGTTCGGAGGGATTTGTATACCTTGTGAGCTCGGTTGGAGTTACTGGAGC
. : . : . : . : . : . :
rJMSF013O23+ TCGGGCATCTGTGAGTGGCAAGGTTGAGTCCCTTCTAAAGCAAATTAAGGAGGCAACATC
rJMFF016C01+ TCGGGCATCTGTGAGTGGCAAGGTTGAGTCCCTTCTAAAGCAAATTAAGGAGGCAACATC
rJMSF017N24+ TCGGGCATCTGTGAGTGGCAAGGTTGAGTCCCTTCTAAAGCAAATTAAGGAGGCAACATC
rJMSF022A19+ TCGGGCATCTGTGAGTGGCAAGGNTGAGTCCCTTNTAAAGCAAATTAAGGAGGCAACATC
rJMFF031L01+ TCGGGCATCTGTGAGTGGCAAGGTTGAGTCCCTTCTAAAGCAAATTAAGGAGGCAACATC
____________________________________________________________
consensus TCGGGCATCTGTGAGTGGCAAGGTTGAGTCCCTTCTAAAGCAAATTAAGGAGGCAACATC
. : . : . : . : . : . :
rJMSF013O23+ GAAGCCAGTAGCAGTTGGTTTCGGGATATCAAAACCCGAGCATGTGAAACAGGTGGCAGC
rJMFF016C01+ GAAGCCAGTAGCAGTTGGTTTCGGGATATCAAAACCCGAGCATGTGAAACAGGTGGCAGC
rJMSF017N24+ GAAGCCAGTAGCAGTTGGTTTCGGGATATCAAAACCCGAGCATGTGAAACAGGTGGCAGC
rJMSF022A19+ GAAGCCAGTAGCAGTTGGTTTCGGGATATCAAAACCCGAGCATGTGAAACAGGTGGCAGC
rJMFF031L01+ GAAGCCAGTAGCAGTTGGTTTCGGGATATCAAAACCCGAGCATGTGAAACAGGTGGCAGC
____________________________________________________________
consensus GAAGCCAGTAGCAGTTGGTTTCGGGATATCAAAACCCGAGCATGTGAAACAGGTGGCAGC
. : . : . : . : . : . :
rJMSF013O23+ GTGGGGAGCTGATGGGGTGATTGTCGGTAGCGCAATGGTGAGAATACTAGGTGAGGCCAA
rJMFF016C01+ GTGGGGAGCTGATGGGGTGATTGTCGGTAGCGCAATGGTGAGAATACTAGGTGAGGCCAA
rJMSF017N24+ GTGGGGAGCTGATGGGGTGATTGTCGGTAGCGCAATGGTGAGAATACTAGGTGAGGCCAA
rJMSF022A19+ GTGGGGAGCTGATGGGGTGATTGTCGGTAGCGCAATGGTGAGAATACTAGGTGAGGCCAA
rJMFF031L01+ GTGGGGAGCTGATGGGGTGATTGTCGGTAGCGCAATGGTGAGAATACTAGGTGAGGCCAA
____________________________________________________________
consensus GTGGGGAGCTGATGGGGTGATTGTCGGTAGCGCAATGGTGAGAATACTAGGTGAGGCCAA
. : . : . : . : . : . :
rJMSF013O23+ ATCGCCTGAAGAAGGATTGAAAGAATTACAAGCGTTTGCAACTTCGCTAAAATCTGCACT
rJMFF016C01+ ATCGCCTGAAGAAGGATTGAAAGAATTACAAGCGTTTGCAACTTCGCTAAAATCTGCACT
rJMSF017N24+ ATCGCCTGAAGAAGGATTGAAAGAATTACAAGCGTTTGCAACTTCGCTAAAATCTGCACT
rJMSF022A19+ ATCGCCTGAAGAAGGATTGAAAGAATTACAAGCGTTTGCAACTTCGCTAAAATCTGCACT
rJMFF031L01+ ATCGCCTGAAGAAGGATTGAAAGAATTACAAGCGTTTGCAACTTCGCTAAAATCTGCACT
____________________________________________________________
consensus ATCGCCTGAAGAAGGATTGAAAGAATTACAAGCGTTTGCAACTTCGCTAAAATCTGCACT
. : . : . : . : . : . :
rJMSF013O23+ TTCTTGATGATTTTACTTCACTGCATATTGGAATTATTATCTCAGATTTCATTTCATAGT
rJMFF016C01+ TTCTTGATGATTTTACTTCACTGCATATTGGAATTATTATCTCAGATTTCATTTCATAGT
rJMSF017N24+ TTCTTGATGATTTTACTTCACTGCATATTGGAATTATTATCTCAGATTTCATTTCATAGT
rJMSF022A19+ TTCTTGATGATTTTACTTCACTGCATATTGGAATTATTATCTCAGATTTCATTTCATAGT
rJMFF031L01+ TTCTTGATGATTTTACTTCACTGCATATTGGAATTATTATCTCAGATTTCATTTCATAGT
____________________________________________________________
consensus TTCTTGATGATTTTACTTCACTGCATATTGGAATTATTATCTCAGATTTCATTTCATAGT
. : . : . : . : . : . :
rJMSF013O23+ TTGGATTG
rJMFF016C01+ TTGGATTGTTTTGATTGGTAATTGTTACTTTTACCC
rJMSF017N24+ TTGGATTGTTTTGATTGGTAATTGTTACTTTTACCCTGAAAGGATGAAGATCTATAGTTG
rJMSF022A19+ TTGGATTGTTTTGATTGGTAATTGTTACTTTTACCCTGAAAGGATGAAGATCTATAGTTG
rJMFF031L01+ TTGGATTGTTTTGATTGGTAATTGTTACTTTTACCCTGAAAGGATGAAGATCTATAGTTG
____________________________________________________________
consensus TTGGATTGTTTTGATTGGTAATTGTTACTTTTACCCTGAAAGGATGAAGATCTATAGTTG
. : . : . : . : . : . :
rJMSF017N24+ GTACTCTCTTTGTTTCTTCCT
rJMSF022A19+ GTACTCTCTTTGTTTCTTCCT
rJMFF031L01+ GTACTCTCTTTGTTTCTTCCTTGACAAATGACTTTGGTTCTCTCATGCAGAAAGTAAAAA
____________________________________________________________
consensus GTACTCTCTTTGTTTCTTCCTTGACAAATGACTTTGGTTCTCTCATGCAGAAAGTAAAAA