Contig 004053:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007A19Sequence539010920 (14)ref|XP_009587203.1|2e-63PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Nicotiana tomentosiformis]704004053 (10)ref|XP_006357690.1|1e-91PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Solanum tuberosum]
JMFF028C07Sequence438010920 (14)ref|XP_009587203.1|3e-49PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Nicotiana tomentosiformis]486004053 (10)emb|CDP16382.1|4e-42unnamed protein product [Coffea canephora]
JMFF031B12Sequence526010920 (14)ref|XP_009587203.1|1e-62PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Nicotiana tomentosiformis]782004053 (10)ref|XP_006357690.1|1e-91PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Solanum tuberosum]
JMSF003C11Sequence322010920 (14)ref|XP_004240171.1|4e-40PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Solanum lycopersicum]727004053 (10)ref|XP_006357690.1|7e-90PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Solanum tuberosum]
JMSF008D21Sequence345010920 (14)ref|XP_009587203.1|4e-45PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Nicotiana tomentosiformis]729004053 (10)ref|XP_006354418.1|6e-108PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Solanum tuberosum]
JMSF008O06Sequence292010920 (14)gb|AGO59892.1|7e-37hydroxyphenylpyruvate dioxygenase [Perilla frutescens]764004053 (10)ref|XP_004243609.1|4e-89PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Solanum lycopersicum]
JMSF009O06Sequence171010920 (14)ref|XP_009770088.1|2e-22PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Nicotiana sylvestris]630004053 (10)ref|XP_004243609.1|8e-73PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Solanum lycopersicum]
JMSF017P21Sequence337010920 (14)ref|XP_004240171.1|1e-43PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Solanum lycopersicum]789004053 (10)ref|XP_006354418.1|5e-104PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Solanum tuberosum]
JMSF033L18Sequence683010920 (14)ref|XP_009587203.1|7e-90PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Nicotiana tomentosiformis]705004053 (10)ref|XP_004243609.1|5e-85PREDICTED: 4-hydroxyphenylpyruvate dioxygenase [Solanum lycopersicum]
JMSF042L12Sequence394007382 (4)ref|XP_009769063.1|7e-63PREDICTED: probable prefoldin subunit 2 [Nicotiana sylvestris] ref|XP_009769064.666004053 (10)ref|XP_010053920.1|1e-38PREDICTED: 4-hydroxyphenylpyruvate dioxygenase-like [Eucalyptus grandis] gb|KCW

Alignment

This contig is upended


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rJMSF008D21+                                                              CGGCACCG
                      ____________________________________________________________
consensus                                                                 CGGCACCG
 
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rJMSF008D21+          CCGAGAGCGGCCTGAACTCAGTGGTGCTGGCTAACAACGACGAGACGGTTCTTCTCCCCT
rJMSF017P21+           CGAGAGCGGCCTGAACTCAGTGGTGCTGGCTAACAACGACGAGACGGTTTTTCTCCCCN
                      ____________________________________________________________
consensus             CCGAGAGCGGCCTGAACTCAGTGGTGCTGGCTAACAACGACGAGACGGTTTTTCTCCCCT
 
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rJMSF008D21+          TGAACGAGCCGGTTCACGGGACGAAAAGGAAGAGCCAAATTCAGACCTATCTGGAGCACA
rJMFF007A19+          TGAACGAGCCGGTTCACGGGACGAAAAGGAAGAGCCAAATTCAGACCTATCTGGAGCACA
rJMSF017P21+          TGAACGAGCCGGTTCACGGGACGAAAAGGAAGAGCCAAATTCAGACCTATCTGGAGCACA
rJMSF008O06+                 GCCGGTTCACGGGACGAAAAGGAAGAGCCAAATTCAGACCTATCTGGAGCACA
rJMSF033L18+                                   AAGGAAGAGCCAAATTCAGACCTATCTGGAGCACA
rJMSF042L12+                                                             TGGAGCACA
rJMSF003C11+              CGAGCCGGTTCACGGGACGAAAAGGAAGAGCCAAATTCAGACCTATCTGGAGCACA
rJMFF031B12+          TGAACGAGCCGGTTCACGGGACGAAAAGGAAGAGCCAAATTCAGACCTATCTGGAGCACA
                      ____________________________________________________________
consensus             TGAACGAGCCGGTTCACGGGACGAAAAGGAAGAGCCAAATTCAGACCTATCTGGAGCACA
 
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rJMSF008D21+          ACGAAGGACCAGGACTCCAGCATTTAGCTCTCACAAGCGAAGATATCTTCAGAACACTGC
rJMFF007A19+          ACGAAGGACCAGGACTCCAGCATTTAGCTCTCACAAGCGAAGATATCTTCAGAACACTGC
rJMSF017P21+          ACGAAGGACCAGGACTCCAGCATTTAGCTCTCACAAGCGAAGATATCTTCAGAACACTGC
rJMSF008O06+          ACGAAGGACCAGGACTCCAGCATTTAGCTCTCACAAGCGAAGATATCTTCAGAACACTGC
rJMSF033L18+          ACGAAGGACCAGGACTCCAGCATTTAGCTCTCACAAGCGAAGATATCTTCAGAACACTGC
rJMSF009O06+                       ACTCCAGCATTTAGCTCTCACAAGCGAAGATATCTTCAGAACACTGC
rJMSF042L12+          TNGAAGGACCAGGACTCCAGCATNTAGCTCTCGCAAGCGAAGATATCTTCAGAACACTGC
rJMSF003C11+          ACGAAGGACCAGGACTCCAGCATTTAGCTCTCACAAGCGAAGATATCTTCAGAACACTGC
rJMFF031B12+          ACGAAGGACCAGGACTCCAGCATTTAGCTCTCACAAGCAAAGATATCTTCAGAACACTGC
                      ____________________________________________________________
consensus             ACGAAGGACCAGGACTCCAGCATTTAGCTCTCACAAGCGAAGATATCTTCAGAACACTGC
 
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rJMSF008D21+          GAGAAATGAGGAATCGGAGCGGAATCGGAGGTTTCGAGTTCATGCCGT-CGCCGCCGCCG
rJMFF007A19+          GAGAAATGAGGAATCGGAGCGGAATCGGAGGTTTCGAGTTCATGCCGT-CGCCGCCGCCG
rJMSF017P21+          GAGAAATGAGGAATCGGAGCGGAATCGGAGGTTTCGAGTTCATGCCGT-CGCCGCCGCCG
rJMSF008O06+          GAGAAATGAGGAATCGGAGCGGAATCGGAGGTTTCGAGTTCATGCCGT-CGCCGCCGCCG
rJMSF033L18+          GAGAAATGAGGAATCGGAGCGGAATCGGAGGTTTCGAGTTCATGCCGT-CGCCGCCGCCG
rJMSF009O06+          GAGAAATGAGGAATCGGAGCGGAATCGGAGGTTTCGAGTTCATGCCGT-CGCCGCCGCCG
rJMSF042L12+          GAGAANTGAGGAATCGGAGCGGAATCGGAGGTTTNGAGTTCATGCCGTNCGCCGCCGCCG
rJMSF003C11+          GAGAAATGAGGAATCGGAGCGGAATCGGAGGTTTCGAGTTCATGCCGT-CGCCGCCGCCG
rJMFF031B12+          GAGAAATGAGGAATCGGAGCGGAATCGGAGGTTTCGAGTTCATGCCGT-CGCCGCCGCCG
                      ____________________________________________________________
consensus             GAGAAATGAGGAATCGGAGCGGAATCGGAGGTTTCGAGTTCATGCCGT-CGCCGCCGCCG
 
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rJMSF008D21+          ACGTACTACAAGAATTTAAAGAGCAGAGCCGGCGATGTTCTGAGCGATGAACAAATTAAG
rJMFF007A19+          ACGTACTACAAGAATTTAAAGAGCAGAGCCGGCGATGTTCTGAGCGATGAACAAATTAAG
rJMSF017P21+          ACGTACTACAAGAATTTAAAGAGCAGAGCCGGCGATGTTCTGAGCGATGAACAAATTAAG
rJMSF008O06+          ACGTACTACAAGAATTTAAAGAGCAGAGCCGGCGATGTTCTGAGCGATGAACAAATTAAG
rJMSF033L18+          ACGTACTACAAGAATTTAAAGAGCAGAGCCGGCGATGTTCTGAGCGATGAACAAATTAAG
rJMSF009O06+          ACGTACTACAAGAATTTAAAGAGCAGAGCCGGCGATGTTCTGAGCGATGAACAAATTAAG
rJMSF042L12+          ACGTACTACAAGAATTTAAAGAGCAGAGCCGGCGATGTTNTGAGCGATGNACAAATTAAG
rJMSF003C11+          ACGTACTACAAGAATTTAAAGAGCAGAGCCGGCGATGTTCTGAGCGATGAACAAATTAAG
rJMFF028C07+                                                   GAGCGATGAACAAATTAAG
rJMFF031B12+          ACGTACTACAAGAATTTAAAGAGCAGAGCCGGCGATGTTCTGAGCGATGAACAAATTAAG
                      ____________________________________________________________
consensus             ACGTACTACAAGAATTTAAAGAGCAGAGCCGGCGATGTTCTGAGCGATGAACAAATTAAG
 
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rJMSF008D21+          GAGTGTGAAGAATTGGGGATTTTAGTGGATAGAGATGACCAGGGAACTCTGCTTCAAATC
rJMFF007A19+          GAGTGTGAAGAATTGGGGATTTTAGTGGATAGAGATGACCAGGGAACTCTGCTTCAAATC
rJMSF017P21+          GAGTGTGAAGAATTGGGGATTTTAGTGGATAGAGATGACCAGGGAACTCTGCTTCAAATC
rJMSF008O06+          GAGTGTGAAGAATTGGGGATTTTAGTGGATAGAGATGACCAGGGAACTCTGCTTCAAATC
rJMSF033L18+          GAGTGTGAAGAATTGGGGATTTTAGTGGATAGAGATGACCAGGGAACTCTGCTTCAAATC
rJMSF009O06+          GAGTGTGAAGAATTGGGGATTTTAGTGGATAGAGATGACCAGGGAACTCTGCTTCAAATC
rJMSF042L12+          GAGTNTGAAGANNTGGGGATTTTAGTGGATAGAGATGACCAGGGAACTCTGCNTCAAATN
rJMSF003C11+          GAGTGTGAAGAATTGGGGATTTTAGTGGATAGAGATGACCAGGGAACTCTGCTTCAAATC
rJMFF028C07+          GAGTGTGAAGAATTGGGGATTTTAGTGGATAGAGATGACCAGGGAACTCTGCTTCAAATC
rJMFF031B12+          GAGTGTGAAGAATTGGGGATTTTAGTGGATAGAGATGACCAGGGAACTCTGCTTCAAATC
                      ____________________________________________________________
consensus             GAGTGTGAAGAATTGGGGATTTTAGTGGATAGAGATGACCAGGGAACTCTGCTTCAAATC
 
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rJMSF008D21+          TTCACCAAGCCTGTTGGAGACAGGCCGACACTATTTATAGAAATAATCCAGAGAGTCGGG
rJMFF007A19+          TTCACCAAGCCTGTTGGAGACAGGCCGACACTATTTATAGAAATAATCCAGAGAGTCGGG
rJMSF017P21+          TTCACCAAGCCTGTTGGAGACAGGCCGACACTATTTATAGAAATAATCCAGAGAGTCGGG
rJMSF008O06+          TTCACCAAGCCTGTTGGAGACAGGCCGACACTATTTATAGAAATAATCCAGAGAGTCGGG
rJMSF033L18+          TTCACCAAGCCTGTTGGAGACAGGCCGACACTATTTATAGAAATAATCCAGAGAGTCGGG
rJMSF009O06+          TTCACCAAGCCTGTTGGAGACAGGCCGACACTATTTATAGAAATAATCCAGAGAGTCGGG
rJMSF042L12+          TTCNCCAAGCCTGTNGGAGACAGGCCGACACTATTTNTAGAAATAATCCAGAGAGTCGGG
rJMSF003C11+          TTCACCAAGCCTGTTGGAGACAGGCCGACACTATTTATAGAAATAATCCAGAGAGTCGGG
rJMFF028C07+          TTCACCAAGCCTGTTGGAGACAGGCCGACACTATTTATAGAAATAATCCAGAGAGTCGGG
rJMFF031B12+          TTCACCAAGCCTGTTGGAGACAGGCCGACACTATTTATAGAAATAATCCAGAGAGTCGGG
                      ____________________________________________________________
consensus             TTCACCAAGCCTGTTGGAGACAGGCCGACACTATTTATAGAAATAATCCAGAGAGTCGGG
 
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rJMSF008D21+          TGCATGATGAAGAAGGAAGATGGAGAGGTGTATCAGAAGGGCGGGTGTGGCGGTTTTGGC
rJMFF007A19+          TGCATGATGAAGAAGGAAGATGGAGAGGTGTATCAGAAGGGCGGGTGTGGCGGTTTTGGC
rJMSF017P21+          TGCATGATGAAGAAGGAAGATGGAGAGGTGTATCAGAAGGGCGGGTGTGGCGGTTTTGGC
rJMSF008O06+          TGCATGATGAAGAAGGAAGATGGAGAGGTGTATCAGAAGGGCGGGTGTGGCGGTTTTGGC
rJMSF033L18+          TGCATGATGAAGAAGGAAGATGGAGAGGTGTATCAGAAGGGCGGGTGTGGCGGTTTTGGC
rJMSF009O06+          TGCATGATGAAGAAGGAAGATGGAGAGGTGTATCAGAAGGGCGGGTGTGGCGGTTTTGGC
rJMSF042L12+          TGCATGATGAAGAAGGAAGATGGAGAGGTGTATCAGAAGGGCGGGTGTGGCGGTTTTGGC
rJMSF003C11+          TGCATGATGAAGAAGGAAGATGGAGAGGTGTATCAGAAGGGCGGGTGTGGCGGTTTTGGC
rJMFF028C07+          TGCATGATGAAGAAGGAAGATGGAGAGGTGTATCAGAAGGGCGGGTGTGGCGGTTTTGGC
rJMFF031B12+          TGCATGATGAAGAAGGAAGATGGAGAGGTGTATCAGAAGGGCGGGTGTGGCGGTTTTGGC
                      ____________________________________________________________
consensus             TGCATGATGAAGAAGGAAGATGGAGAGGTGTATCAGAAGGGCGGGTGTGGCGGTTTTGGC
 
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rJMSF008D21+          AAGGGCAACTTCTCCGAACTTTTCAAAT-CTATTGAGGAATATGAGAAGATGCTTGAAGC
rJMFF007A19+          AAGGGCAACTTCTCCGAACTTTTCAAAT-CTATTGAGGAATATGAGAAGATGCTTGAAGC
rJMSF017P21+          AAGGGCAACTTCTCCGAACTTTTCAAAT-CTATTGAGGAATATGAGAAGATGCTTGAAGC
rJMSF008O06+          AAGGGCAACTTCTCCGAACTTTTCAAAT-CTATTGAGGAATATGAGAAGATGCTTGAAGC
rJMSF033L18+          AAGGGCAACTTCTCCGAACTTTTCAAAT-CTATTGAGGAATATGAGAAGATGCTTGAAGC
rJMSF009O06+          AAGGGCAACTTCTCCGAACTTTTCAAAT-CTANTGAGGAATATGAGAAGATGCTTGAAGC
rJMSF042L12+          AAGGGCAACTTCTCCGAACTTTTCAAATCCTATTGAGGAATATGAGAAGATGCTTGAAGC
rJMSF003C11+          AAGGGCAACTTCTCCGAACTTTTCAAAT-CTATTGAGGAATATGAGAAGATGCTTGAAGC
rJMFF028C07+          AAGGGCAACTTCTCCGAACTTTTCAAAT-CTATTGAGGAATATGAGAAGATGCTTGAAGC
rJMFF031B12+          AAGGGCAACTTCTCCGAACTTTTCAAAT-CTATTGAGGAATATGAGAAGATGCTTGAAGC
                      ____________________________________________________________
consensus             AAGGGCAACTTCTCCGAACTTTTCAAAT-CTATTGAGGAATATGAGAAGATGCTTGAAGC
 
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rJMSF008D21+          TAAACAAGCTATTCATGCAGCATGAGTATGTATCCTCTCTTTTGATTACCCCCTCCTGCC
rJMFF007A19+          TAAACAAGCTATTCATGCAGCATGAGTATGTATCCTCTCTTTTGATTACCCCCTCCTGCC
rJMSF017P21+          TAAACAAGCTATTCATGCAGCATGAGTATGTATCCTCTCTTTTGATTACCCCCTCCTGCC
rJMSF008O06+          TAAACAAGCTATTCATGCAGCATGAGTATGTATCCTCTCTTTTGATTACCCCCTCCTGCC
rJMSF033L18+          TAAACAAGCTATTCATGCAGCATGAGTATGTATCCTCTCTTTTGATTACCCCCTCCTGCC
rJMSF009O06+          TAAACAAGCTATTCATGCAGCATGAGTATGTATCCTCTCTTTTGATTACCCCCTCCTGCC
rJMSF042L12+          TAANCAAGCTATTCATGCAGCATGAGTATGNATCCTCTCNTTTGATTACCCCCTCCTGCC
rJMSF003C11+          TAAACAAGCTATTCATGCAGCATGAGTATGTATCCTCTCTTTTGATTACCCCCTCCTGCC
rJMFF028C07+          TAAACAAGCTATTCATGCAGCATGAGTATGTATCCTCTCTTTTGATTACCCCCTCCTGCC
rJMFF031B12+          TAAACAAGCTATTCATGCAGCATGAGTATGTATCCTCTCTTTTGATTACCCCCTCCTGCC
                      ____________________________________________________________
consensus             TAAACAAGCTATTCATGCAGCATGAGTATGTATCCTCTCTTTTGATTACCCCCTCCTGCC
 
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rJMSF008D21+          ATGGCAATTCAAATAGCCAGGATGGATGCGTTCCTCGATCTTTTGCAGGAGAATGCTGTG
rJMFF007A19+          ATGGCAATTCAAATAGCCAGGATGGATGCGTTCCTCGATCTTTTGCAGGAGAATGCTGTG
rJMSF017P21+          ATGGCAATTCAAATAGCCAGGATGGATGCGTTCCTCGATCTTTTGCAGGAGAATGCTGTG
rJMSF008O06+          ATGGCAATTCAAATAGCCAGGATGGATGCGTTCCTCGATCTTTTGCAGGAGAATGCTGTG
rJMSF033L18+          ATGGCAATTCAAATAGCCAGGATGGATGCGTTCCTCGATCTTTTGCAGGAGAATGCTGTG
rJMSF009O06+          ATGGCAATTCAAATAGCCAGGATGGATGCGTTCCTCGATCTTTTGCAGGAGAATGCTGTG
rJMSF042L12+          ATGNCAATTCAAATAGCCAGGANGGATGCGTTCCTCGATCTTCTGCAGGAGAATGCTGTG
rJMSF003C11+          ATGGCAATTCAAATAGCCAGGATGGATGCGTTCCTCGATCTTTTGCAGGAGAATGCTGTG
rJMFF028C07+          ATGGCAATTCAAATAGCCAGGATGGATGCGTTCCTCGATCTTTTGCAGGAGAATGCTGTG
rJMFF031B12+          ATGGCAATTCAAATAGCCAGGATGGATGCGTTCCTCGATCTTTTGCAGGAGAATGCTGTG
                      ____________________________________________________________
consensus             ATGGCAATTCAAATAGCCAGGATGGATGCGTTCCTCGATCTTTTGCAGGAGAATGCTGTG
 
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rJMSF008D21+          CTATGAAAGTGTGATATGTTCATCCAAAGTTATGTATACAAACTGATATCATGTTAAGTT
rJMFF007A19+          CTATGAAAGTGTGATATGTTCATCCAAAGTTATGTATACAAACTGATATCATGTTAAGTT
rJMSF017P21+          CTATGAAAGTGTGATATGTTCATCCAAAGTTATGTATACAAACTGATATCATGTTAAGTT
rJMSF008O06+          CTATGAAAGTGTGATATGTTCATCCAAAGTTATGTATACAAACTGATATCATGTTAAGTT
rJMSF033L18+          CTATGAAAGTGTGATATGTTCATCCAAAGTTATGTATACAAACTGATATCATGTTAAGTT
rJMSF009O06+          CTATGAAAGTGTGATATGTTCATCCAAAGTTATGTATACAAACTGATATCATGTTAAGTT
rJMSF042L12+          CTATGAAAGTNTGATATGTTCATCCAAAGTTATGTANACAAACNGATATCATGNTAANTT
rJMSF003C11+          CTATGAAAGTGTGATATGTTCATCCAAAGTTATGTATACAAACTGATATCATGTTAAGTT
rJMFF028C07+          CTATGAAAGTGTGATATGTTCATCCAAAGTTATGTATACAAACTGATATCATGTTAAGTT
rJMFF031B12+          CTATGAAAGTGTGATATGTTCATCCAAAGTTATGTATACAAACTGATATCATGTTAAGTT
                      ____________________________________________________________
consensus             CTATGAAAGTGTGATATGTTCATCCAAAGTTATGTATACAAACTGATATCATGTTAAGTT
 
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rJMFF007A19+          TGCATCTAGACATACAATAATAGATACTTGTAGAATTTATT                   
rJMSF017P21+          TGCATCTAGACATACAATAATAGATACTTGTAGAATTTATTTAAAATGTTGGATCC    
rJMSF008O06+          TGCATCTAGACATACAATAATAGATACTTGTAGAATTTA-TTAAAATGTTGGATCCGGTG
rJMSF033L18+          TGCATCTAGACATACAATAATAGATACTTGTAGAATTTATTTAAAATGTTGGATCC    
rJMSF009O06+          TGCATCTAGACATACAATAATAGA                                    
rJMSF042L12+          TGCATCTAGACATACAATAATNGCTACTTGTAGAATTTATTTAAAA              
rJMSF003C11+          TGCATCTAGACATACAATAATAGATACTTGTAGAATTTATTTAAAATGTTGGATCC    
rJMFF028C07+          TGCATCTAGACATACAATAATAGATACTTGTAGAATTTATTTAAAATG            
rJMFF031B12+          TGCATCTAGACATACAATAATAGATACTTGTAGAATTTATTTAAAATGTTGGATCCGGTG
                      ____________________________________________________________
consensus             TGCATCTAGACATACAATAATAGATACTTGTAGAATTTATTTAAAATGTTGGATCCGGTG
 
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rJMSF008O06+          TATTAGATGCTTGAGTGTATTTTTGTGTTAAGCACTATCTACTCCTTTGGATAT      
rJMFF031B12+          TATTAGATGCTTGAGTGTATTTTTGTGTTAAGCACTATCTACTCCTTTGGATATGCTCAT
                      ____________________________________________________________
consensus             TATTAGATGCTTGAGTGTATTTTTGTGTTAAGCACTATCTACTCCTTTGGATATGCTCAT