Contig 004046:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007J13Sequence520004568 (3)323004046 (3)ref|XP_007052078.1|2e-25RNA 2'-phosphotransferase isoform 5 [Theobroma cacao] gb|EOX96235.1| RNA 2'-phos
JMFF028F07Sequence489004568 (3)ref|XP_004229805.1|3e-05PREDICTED: tRNA 2'-phosphotransferase 1 [Solanum lycopersicum]415004046 (3)ref|XP_007052076.1|4e-27RNA 2'-phosphotransferase isoform 3 [Theobroma cacao] gb|EOX96233.1| RNA 2'-phos
JMSF001N24Sequence371004568 (3)688004046 (3)emb|CDO97696.1|3e-57unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF001N24+                      CCAATGAATATATAAAAATGATGGNGGTGTCNGTAATTATGGGTATAT
                      ____________________________________________________________
consensus                         CCAATGAATATATAAAAATGATGGNGGTGTCNGTAATTATGGGTATAT
 
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rJMSF001N24+          GCAATTTTAAATTTTTATTCCCTCTGGTGTGCATTCGAATTAATGTTTTATGCAAGATTG
                      ____________________________________________________________
consensus             GCAATTTTAAATTTTTATTCCCTCTGGTGTGCATTCGAATTAATGTTTTATGCAAGATTG
 
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rJMSF001N24+          AGTTACCCTTCTCTGCTGGAATGACATGTAATAGACGGTTGAAACTGAAAGCTTGTTGAA
                      ____________________________________________________________
consensus             AGTTACCCTTCTCTGCTGGAATGACATGTAATAGACGGTTGAAACTGAAAGCTTGTTGAA
 
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rJMSF001N24+          ACCAATCCNTTCAGCTGAAGAAGTTCCNGTGTGNGTCCNTGGGNCCTACNAGAAGAATTT
                      ____________________________________________________________
consensus             ACCAATCCNTTCAGCTGAAGAAGTTCCNGTGTGNGTCCNTGGGNCCTACNAGAAGAATTT
 
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rJMSF001N24+          GGAACTGATTTTGGAGCAAGGCCTCNAACGCNTGAAAAGGTTACATGTTCNCTTCTCACG
                      ____________________________________________________________
consensus             GGAACTGATTTTGGAGCAAGGCCTCNAACGCNTGAAAAGGTTACATGTTCNCTTCTCACG
 
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rJMSF001N24+          TGGCTTACCNACNGATGGNGAAGTAATTAGTGGAATGAGGCGAGATGTCAATATCCTAAT
rJMFF007J13+                       GATGGTGAAGTNATTNGTGGAATGAGGNGAGATGTCAATATCCTAAT
rJMFF028F07+                       GATGGNGAAGTAATTAGTGGAATGAGGGGAGATGTCAATATCCTAAT
                      ____________________________________________________________
consensus             TGGCTTACCNACNGATGGTGAAGTAATTAGTGGAATGAGGGGAGATGTCAATATCCTAAT
 
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rJMSF001N24+          CTTTCTGGATGTCAAAAAAGCTCTAGAAGAAGGAATGAAGCTTTACATCTNTGATAATAA
rJMFF007J13+          NTTTTTGGANGTCAAAAAAGCTTTNGAAGAAGGAANGAAGCTTTACATNTTTGATAATAA
rJMFF028F07+          NTTTTTGGANGTCAAAAAAGCTTTAGAAGAAGGAANGAAGCTTTACATNTNTGATAATAA
                      ____________________________________________________________
consensus             CTTTTTGGATGTCAAAAAAGCTTTAGAAGAAGGAATGAAGCTTTACATCTTTGATAATAA
 
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rJMSF001N24+          GGTCATATTGACAGAGGGTTTTGATGGTGTAGTGCCNGTGAAGTACTTCAAGAAAATTGA
rJMFF007J13+          GGTCATATTGACAGAGGGTTTTGATGGNGTAGTGCCAGTGAAGTNCTTCAAGAAAANTGA
rJMFF028F07+          GGTCATATTGACAGAGGGTTTTGATGGTGTAGTGCCNGTGAAGTNCTTCAAGAAAATTGA
                      ____________________________________________________________
consensus             GGTCATATTGACAGAGGGTTTTGATGGTGTAGTGCCAGTGAAGTACTTCAAGAAAATTGA
 
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rJMSF001N24+          ATCNTGGCCAGATAGAAAATCCNTCTCNTTTCCNGTTGATTAACCTTGGNTTCCTCC-NT
rJMFF007J13+          ATCATGGCCAGATAGAAAATCCNTNTCATTTCCAGTTGATTAACCTTGGATTCCTCCNTT
rJMFF028F07+          ATCATGGCCAGATAGAAAATCCATNTCATTTCCAGTTGATTAACCTTGGATTCCTCC-AT
                      ____________________________________________________________
consensus             ATCATGGCCAGATAGAAAATCCATCTCATTTCCAGTTGATTAACCTTGGATTCCTCC-TT
 
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rJMSF001N24+          TTTTTTTTTGAATTTTTATCTTTTACTGTTTATTGAAGTTGAGACATTCAATCAAGAGTC
rJMFF007J13+          TTTTTTTTTGAATTTTTATCTTTTACTGTTTATTGAAGTTGAGACATTCAATCTAGAGTC
rJMFF028F07+          TTTTTTTTTGAATTTTTATCTTTTACTGTTTATTGAAGTTGAGACATTCAATCAAGAGTC
                      ____________________________________________________________
consensus             TTTTTTTTTGAATTTTTATCTTTTACTGTTTATTGAAGTTGAGACATTCAATCAAGAGTC
 
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rJMSF001N24+          ACAAGTTTAGACAACTATAGTAAAAGGTCTTTGACATATGTTTTGAACCATGATGTTTGT
rJMFF007J13+          ACAAGTTTAGACAACTATAGTAAAAGGTCT                              
rJMFF028F07+          ACAAGTTTAGACAACTATAGTAAAAGGTCTTTGACATATGTTTTGAACCATGATGTTTGT
                      ____________________________________________________________
consensus             ACAAGTTTAGACAACTATAGTAAAAGGTCTTTGACATATGTTTTGAACCATGATGTTTGT
 
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rJMSF001N24+          CATACTTTAAAAGCCTGCCTTGTATACTGCTT                            
rJMFF028F07+          CATACTTTAAAAGCCTGCCTTGTATACTGCTTTAGACCCAATTACATAAACAATATGAAG
                      ____________________________________________________________
consensus             CATACTTTAAAAGCCTGCCTTGTATACTGCTTTAGACCCAATTACATAAACAATATGAAG