Contig 004043:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027H03Sequence622003187 (3)ref|XP_009788156.1|2e-06PREDICTED: putative UPF0481 protein At3g02645 isoform X2 [Nicotiana sylvestris]754004043 (2)ref|XP_009777972.1|7e-36PREDICTED: UPF0481 protein At3g47200-like, partial [Nicotiana sylvestris]
JMFF050O01Sequence648003297 (4)ref|XP_009778673.1|146PREDICTED: uncharacterized protein LOC104227990 [Nicotiana sylvestris]581004043 (2)ref|XP_004236861.1|8e-31PREDICTED: putative UPF0481 protein At3g02645 isoform X1 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF027H03+ ACAATATGTGGCTAAGATTAAACCATATGAACAG
                      ____________________________________________________________
consensus ACAATATGTGGCTAAGATTAAACCATATGAACAG
 
. : . : . : . : . : . :
rJMFF027H03+ TGCGACAGAGCTTAAAGGGGTTGGAGTTAGGTTTGACAAGATTGGCCAAGTCTTCAATAT
                      ____________________________________________________________
consensus TGCGACAGAGCTTAAAGGGGTTGGAGTTAGGTTTGACAAGATTGGCCAAGTCTTCAATAT
 
. : . : . : . : . : . :
rJMFF050O01+ GA
rJMFF027H03+ GCCAAAGAAATATGAAAACATTCCACCACCAAAGTATCGCGGTGGCAGTAGCTTGTTCGA
                      ____________________________________________________________
consensus GCCAAAGAAATATGAAAACATTCCACCACCAAAGTATCGCGGTGGCAGTAGCTTGTTCGA
 
. : . : . : . : . : . :
rJMFF050O01+ TATAACCTTTCATAATGGGATAATGACCATACCATGCTTTAAAGTCGACAACTACACTGA
rJMFF027H03+ TATAACCTTTCATAATGGGATAATGACCATACCATGCTTTAAAGTCGACAACTACACTGA
                      ____________________________________________________________
consensus TATAACCTTTCATAATGGGATAATGACCATACCATGCTTTAAAGTCGACAACTACACTGA
 
. : . : . : . : . : . :
rJMFF050O01+ ACTATTCTTCCGAAGCATGATTGCCATGGAGCAGCGGTGCAGCGAGAGACTAAACCCCAA
rJMFF027H03+ ACTATTCTTCCGAAACATGATTGCCATGGAGCAGCGGTGCAGCGAGAGACTAAACCCCAA
                      ____________________________________________________________
consensus ACTATTCTTCCGAAGCATGATTGCCATGGAGCAGCGGTGCAGCGAGAGACTAAACCCCAA
 
. : . : . : . : . : . :
rJMFF050O01+ ATACTTCACAGATTATGCGAGGTTGATGGACCACTTGGTGGACACCAATAGAGACGTTAG
rJMFF027H03+ ATACTTCACAGATTATGCGAGGTTGATGGACCACTTGGTGGACACCAATAGAGACGTTAG
                      ____________________________________________________________
consensus ATACTTCACAGATTATGCGAGGTTGATGGACCACTTGGTGGACACCAATAGAGACGTTAG
 
. : . : . : . : . : . :
rJMFF050O01+ TTTGCTCCGCAAGAATGGGATCATTCAAAACCTCTTAGGTGAAGATAGGAAGGTGGCCTA
rJMFF027H03+ TTTGCTCCGCAAGAATGGGATCATTCAAAACCTCTTAGGTGAAGATAGGAAGGTGGCCTA
                      ____________________________________________________________
consensus TTTGCTCCGCAAGAATGGGATCATTCAAAACCTCTTAGGTGAAGATAGGAAGGTGGCCTA
 
. : . : . : . : . : . :
rJMFF050O01+ TATTTTCAACAACCTCAGTGCCGAGGTAGATACTTCCACCAACTTCTATTTTGCATCGGT
rJMFF027H03+ TATTTTCAACAACCTCAGTGCCGAGGTAGATACTTCCACCAACTTCTATTTTGCATCGGT
                      ____________________________________________________________
consensus TATTTTCAACAACCTCAGTGCCGAGGTAGATACTTCCACCAACTTCTATTTTGCATCGGT
 
. : . : . : . : . : . :
rJMFF050O01+ GTACAAGGATGTGGATCAGCACTCTCCTGATGACTGTTGTAATTTCAGCAAACCCAAAAC
rJMFF027H03+ GTACAAGGATGTGGATCAGCACTCTCCTGATGACTGTTGTAATTTCAGCAAACCCAAAAC
                      ____________________________________________________________
consensus GTACAAGGATGTGGATCAGCACTCTCCTGATGACTGTTGTAATTTCAGCAAACCCAAAAC
 
. : . : . : . : . : . :
rJMFF050O01+ TTACTGCCTATGGAAAGTGATTACTACTCTCTTGATCGCTATCCCGTTGTTGATTTTGGC
rJMFF027H03+ TTACTGCCTATGGAAAGTGATTACTACTCTCTTGATCGCTATCCCGTTGTTGATTTTGGC
                      ____________________________________________________________
consensus TTACTGCCTATGGAAAGTGATTACTACTCTCTTGATCGCTATCCCGTTGTTGATTTTGGC
 
. : . : . : . : . : . :
rJMFF050O01+ AGTTCGTCCAAGTAAAGTTCAGATCAAGATTAGTCACTAAAATAATATGTACGTACTTGT
rJMFF027H03+ AGTTCGTCCAAGTAAAGTTCAGATCAAGATTAGTCACTAAAATAATATGTACGTACTTGT
                      ____________________________________________________________
consensus AGTTCGTCCAAGTAAAGTTCAGATCAAGATTAGTCACTAAAATAATATGTACGTACTTGT
 
. : . : . : . : . : . :
rJMFF050O01+ GTAGTTTCATCAATGTGTACTTCATACTACTTTGTAAAACAAAACTTGAATCCATCTGGG
rJMFF027H03+ GTAGTTTCATCAATGTGTACTTCATACTACTTTGTAAAACAAAACTTGAATCCATCTGGG
                      ____________________________________________________________
consensus GTAGTTTCATCAATGTGTACTTCATACTACTTTGTAAAACAAAACTTGAATCCATCTGGG
 
. : . : . : . : . : . :
rJMFF050O01+ GTCTTAATTAGAATTGAATAATCCCACTTGGGAACCTGT
rJMFF027H03+ GTCTTAATTAGAATTGAATAATCCCACTTGGGAACCTGTAAAAGTAAGTATAAAATCAGA
                      ____________________________________________________________
consensus GTCTTAATTAGAATTGAATAATCCCACTTGGGAACCTGTAAAAGTAAGTATAAAATCAGA