Contig 004041:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027B17Sequence567011850 (10)ref|XP_009799603.1|6e-73PREDICTED: zinc finger CCCH domain-containing protein 30-like [Nicotiana sylves717004041 (3)emb|CDP07776.1|3e-47unnamed protein product [Coffea canephora]
JMFF036F23Sequence523011850 (10)ref|XP_009799603.1|2e-63PREDICTED: zinc finger CCCH domain-containing protein 30-like [Nicotiana sylves666004041 (3)emb|CDP07776.1|3e-38unnamed protein product [Coffea canephora]
JMSF039D19Sequence208011850 (10)735004041 (3)emb|CDP07776.1|2e-52unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF039D19+                                             TGAGCGCCCGCCTTTCTGTTTTCGC
                      ____________________________________________________________
consensus                                                TGAGCGCCCGCCTTTCTGTTTTCGC
 
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rJMSF039D19+          TCAGCGTGAGAAACAGCATCAGCAGCTACGCAGCCTGAGCTCTCGGGATCTTGGCTCCAA
rJMFF027B17+            AGCGTGAGAAACAGCATCAGCAGCTACGCAGCCTGAGCTCTCGGGATCTTGGCTCCAA
                      ____________________________________________________________
consensus             TCAGCGTGAGAAACAGCATCAGCAGCTACGCAGCCTGAGCTCTCGGGATCTTGGCTCCAA
 
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rJMSF039D19+          CAACCACAACACCTCTATTGTTGGGTCCCCAGTGAGCAATTCTTGGTCTAACTGGGGTTC
rJMFF036F23+                CAACACCTCTATTGTTGGGTCCCCAGTGAGCAATTCTTGGTCTAACTGGGGTTC
rJMFF027B17+          CAACCACAACACCTCTATTGTTGGGTCCCCAGTGAGCAATTCTTGGTCTAACTGGGGTTC
                      ____________________________________________________________
consensus             CAACCACAACACCTCTATTGTTGGGTCCCCAGTGAGCAATTCTTGGTCTAACTGGGGTTC
 
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rJMSF039D19+          CCCCAGTACAAGACCTGACTGGTCCTTCAACGGCGATGAACCAAGCCATCTCCGTAGATC
rJMFF036F23+          CCCCAGTACAAGACCTGACTGGTCCTTCAACGGCGATGAACCAAGCCATCTCCGTAGATC
rJMFF027B17+          CCCCAGTACAAGACCTGACTGGTCCTTCAACGGCGATGAACCAAGCCATCTCCGTAGATC
                      ____________________________________________________________
consensus             CCCCAGTACAAGACCTGACTGGTCCTTCAACGGCGATGAACCAAGCCATCTCCGTAGATC
 
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rJMSF039D19+          ATCTTCTTTCGAGCGGCTCAACAACAACAACAACAGCGAGGAGCCCGATCTGTCATGGGT
rJMFF036F23+          ATCTTCTTTCGAGCGGCTCAACAACAACAACAACAGCGAGGAGCCCGATCTGTCATGGGT
rJMFF027B17+          ATCTTCTTTCGAGCGGCTCAACAACAACAACAACAGCGAGGAGCCCGATCTGTCATGGGT
                      ____________________________________________________________
consensus             ATCTTCTTTCGAGCGGCTCAACAACAACAACAACAGCGAGGAGCCCGATCTGTCATGGGT
 
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rJMSF039D19+          CCAATCTCTTGTCAAAGAATCACCACCTGAGATGAAAGATAAGTCTGCAGCGCCAGCTCC
rJMFF036F23+          CCAATCTCTTGTCAAAGAATCACCACCTGAGATGAAAGATAAGTCTGCAGCGCCAGCTCC
rJMFF027B17+          CCAATCTCTTGTCAAAGAATCACCACCTGAGATGAAAGATAAGTCTGCAGCGCCAGCTCC
                      ____________________________________________________________
consensus             CCAATCTCTTGTCAAAGAATCACCACCTGAGATGAAAGATAAGTCTGCAGCGCCAGCTCC
 
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rJMSF039D19+          CCGGGGCGCTGTTCCATCCGGTGAGGGTTTAAAATTCAGTACTCAGACTGATTCCATCGA
rJMFF036F23+          CCGGGGCGCTGTTCCATCCGGTGAGGGTTTAAAATTCAGTACTCAGACTGATTCCATCGA
rJMFF027B17+          CCGGGGCGCTGTTCCATCCGGTGAGGGTTTAAAATTCAGTACTCAGACTGATTCCATCGA
                      ____________________________________________________________
consensus             CCGGGGCGCTGTTCCATCCGGTGAGGGTTTAAAATTCAGTACTCAGACTGATTCCATCGA
 
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rJMSF039D19+          TCAATCTGTTATAGGTACTTGGCTTGAGCAGATGCAACTCGATCAACCCGTAGTCTAGTG
rJMFF036F23+          TCAATCTGTTATAGGTACTTGGCTTGAGCAGATGCAACTCGATCAACCCGTAGTCTAGTG
rJMFF027B17+          TCAATCTGTTATAGGTACTTGGCTTGAGCAGATGCAACTCGATCAACCCGTAGTCTAGTG
                      ____________________________________________________________
consensus             TCAATCTGTTATAGGTACTTGGCTTGAGCAGATGCAACTCGATCAACCCGTAGTCTAGTG
 
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rJMSF039D19+          GGAAGAAGAAGAAAGATTCATNTTCNCCTTATTCTTAGGGAAGCATGTAGTGTAGTANTA
rJMFF036F23+          GGAAGAAGAAGAAAGATTCATTTTCACCTTATTCTTAGGGAAGCATGTAGTGTACTACTA
rJMFF027B17+          GGAAGAAGAAGAAAGATTCATTTTCACCTTATTCTTAGGGAAGCATGTAGTGTACTACTA
                      ____________________________________________________________
consensus             GGAAGAAGAAGAAAGATTCATTTTCACCTTATTCTTAGGGAAGCATGTAGTGTACTACTA
 
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rJMSF039D19+          CTGTTTTGGAGGTAAATTTTTTTGGCCGCCGGNGGAATCAAATGCAGAATCCGGTAAGCT
rJMFF036F23+          CTGTTTTGGAGGTAAATTTTTTTGGCCGCCGGTGGAATCAAATGCAGAATCCGGTAAGCT
rJMFF027B17+          CTGTTTTGGAGGTAAATTTTTTTGGCCGCCGGTGGAATCAAATGCAGAATCCGGTAAGCT
                      ____________________________________________________________
consensus             CTGTTTTGGAGGTAAATTTTTTTGGCCGCCGGTGGAATCAAATGCAGAATCCGGTAAGCT
 
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rJMSF039D19+          AAAGGCAAAATTTCCCAGCAAGTTTTCATTACATTTCATTNGATTATATCATTATTTGTT
rJMFF036F23+          AAAGGCAAAATTTCCCAGCAAGTTTTCATTACATTTCATTTGATTATATCATTATTTGTT
rJMFF027B17+          AAAGGCAAAATTTCCCAGCAAGTTTTCATTACATTTCATTTGATTATATCATTATTTGTT
                      ____________________________________________________________
consensus             AAAGGCAAAATTTCCCAGCAAGTTTTCATTACATTTCATTTGATTATATCATTATTTGTT
 
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rJMSF039D19+          CAAATACATCTTTAATGTTTCAAANTGTTGTCCGGGCTTGCATCAAACATCCCCAGTCCT
rJMFF036F23+          CAAATACATCTTTAATGTTTCAAATTGTTGTCTGGGCTTGCATCAAACATCCCCAGTCCT
rJMFF027B17+          CAAATACATCTTTAATGTTTCAAATTGTTGTCTGGGCTTGCATCAAACATCCCCAGTCCT
                      ____________________________________________________________
consensus             CAAATACATCTTTAATGTTTCAAATTGTTGTCTGGGCTTGCATCAAACATCCCCAGTCCT
 
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rJMSF039D19+          GGCATGTNTGANTTGCCTTTATGTATGATGTANAACTCAAATGAAATT            
rJMFF036F23+          GGCATGT-TGAATTGCCTTTATGTATGATGTAAAACTCAAATGAAATTTGTAATATTTAT
rJMFF027B17+          GGCATGT-TGAATTGCCTTTATGTATGATGTAAAACTCAAATGAAATTTGTAATATTTAT
                      ____________________________________________________________
consensus             GGCATGT-TGAATTGCCTTTATGTATGATGTAAAACTCAAATGAAATTTGTAATATTTAT