Contig 004028:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025E08Sequence578000948 (2)ref|XP_011087784.1|7e-48PREDICTED: uncharacterized protein LOC105169164 isoform X2 [Sesamum indicum]693004028 (4)
JMFS088F08Sequence463004028 (4)
JMSF016N20Sequence525019962740004028 (4)ref|XP_004230521.1|111PREDICTED: uncharacterized protein LOC101262665 [Solanum lycopersicum] ref|XP_01
JMSF044N05Sequence720000948 (2)ref|XP_002276733.1|4e-77PREDICTED: uncharacterized protein LOC100266910 isoform X2 [Vitis vinifera] ref766004028 (4)ref|XP_009777788.1|1e-18PREDICTED: uncharacterized protein LOC104227268 isoform X2 [Nicotiana sylvestri

Alignment

This contig is upended


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rJMSF016N20+                                                               GGGAAAG
                      ____________________________________________________________
consensus                                                                  GGGAAAG
 
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rJMSF016N20+          AGAGAGGGACGATGTGATCAGCACAATAAGGTCGTCAATGCCAGGAGCAGTTGTTTTCGG
rJMSF044N05+                                 CAATAAGGTCGTCAATGCCAGGAGCAGTTGTTTTCGG
                      ____________________________________________________________
consensus             AGAGAGGGACGATGTGATCAGCACAATAAGGTCGTCAATGCCAGGAGCAGTTGTTTTCGG
 
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rJMSF016N20+          TGACTATGTGATAGAAGGAAGCCCGTTTGGTTTTGGCTCAGAGGATGAGGATGGATTTGA
rJMSF044N05+          TGACTATGTGATAGAAGGAAGCCCGTTTGGTTTTGGCTCAGAGGATGAGGATGGATTTGA
                      ____________________________________________________________
consensus             TGACTATGTGATAGAAGGAAGCCCGTTTGGTTTTGGCTCAGAGGATGAGGATGGATTTGA
 
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rJMSF016N20+          GGTCGATGTGATGGACCGTAACGAAGGCTTTGGAGTGGGAATCGATGGCAACTTGATTAA
rJMSF044N05+          GGTCGATGTGATGGACCGTAACGAAGGCTTTGGAGTGGGAATCGATGGCAACTTGATTAA
rJMFF025E08+                                     CTTTGGAGTGGGAATCGATGGCAACTTGATTAA
                      ____________________________________________________________
consensus             GGTCGATGTGATGGACCGTAACGAAGGCTTTGGAGTGGGAATCGATGGCAACTTGATTAA
 
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rJMSF016N20+          TGTCTTACGTTTTTTGCAGGCATTTGGTTCAGCAGGTAATATTGGCTCAAATAGAGGCTC
rJMSF044N05+          TGTCTTACGTTTTTTGCAGGCATTTGGTTCAGCAGGTAATATTGGCTCAAATAGAGGCTC
rJMFF025E08+          TGTCTTACGTTTTTTGCAGGCATTTGGTTCAGCAGGTAATATTGGCTCAAATAGAGGCTC
                      ____________________________________________________________
consensus             TGTCTTACGTTTTTTGCAGGCATTTGGTTCAGCAGGTAATATTGGCTCAAATAGAGGCTC
 
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rJMSF016N20+          GAGGCGGCATGGTGGTAGTAGGGACCCAGCCCGTGCATCAGGTGGAGGCACTGCTGGATT
rJMSF044N05+          GAGGCGGCATGGTGGTAGTAGGGACCCAGCCCGTGCATCAGGTGGAGGCACTGCTGGATT
JMFS088F08-                                                     TGGAGGCACTGCTGGATT
rJMFF025E08+          GAGGCGGCATGGTGGTAGTAGGGACCCAGCCCGTGCATCAGGTGGAGGCACTGCTGGATT
                      ____________________________________________________________
consensus             GAGGCGGCATGGTGGTAGTAGGGACCCAGCCCGTGCATCAGGTGGAGGCACTGCTGGATT
 
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rJMSF016N20+          AGATCGCAACCTTCCAGTTTTCGACTACCCTGATGATGTAGACAGCGATGGTATTGGCAA
rJMSF044N05+          AGATCGCAACCTTCCAGTTTTCGACTACCCTGATGATGTAGACAGCGATGGTATTGGCAA
JMFS088F08-           AGATCGCAACCTTCCAGTTTTCGACTACCCTGATGATGTAGACAGCGATGGTATTGGCAA
rJMFF025E08+          AGATCGCAACCTTCCAGTTTTCGACTACCCTGATGATGTAGACAGCGATGGTATTGGCAA
                      ____________________________________________________________
consensus             AGATCGCAACCTTCCAGTTTTCGACTACCCTGATGATGTAGACAGCGATGGTATTGGCAA
 
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rJMSF016N20+          CGTAGTACATGAAAACAGCACATCACTAGTTGGGCGCCTTCGCCGCCATGGTAGAGTCCT
rJMSF044N05+          CGTAGTACATGAAAACAGCACATCACTAGTTGGGCGCCTTCGCCGCCATGGTAGAGTCCT
JMFS088F08-           CGTAGTACATGAAAACAGCACATCACTAGTTGGGCGCCTTCGCCGCCATGGTAGAGTCCT
rJMFF025E08+          CGTAGTACATGAAAACAGCACATCACTAGTTGGGCGCCTTCGCCGCCATGGTAGAGTCCT
                      ____________________________________________________________
consensus             CGTAGTACATGAAAACAGCACATCACTAGTTGGGCGCCTTCGCCGCCATGGTAGAGTCCT
 
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rJMSF016N20+          GTTGGGACGCTCCGGGAGGAGACGAAGGCGTACTGAGGACCCCGGAGGTCGAGGATAGAT
rJMSF044N05+          GTTGGGACGCTCCGGGAGGAGACGAAGGCGTACTGAGGACCCCGGAGGTCGAGGATAGAT
JMFS088F08-           GTTGGGACGCTCCGGGAGGAGACGAAGGCGTACTGAGGACCCCGGAGGTCGAGGATAGAT
rJMFF025E08+          GTTGGGACGCTCCGGGAGGAGACGAAGGCGTACTGAGGACCCCGGAGGTCGAGGATAGAT
                      ____________________________________________________________
consensus             GTTGGGACGCTCCGGGAGGAGACGAAGGCGTACTGAGGACCCCGGAGGTCGAGGATAGAT
 
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rJMSF016N20+          GTTATTATTATTGTTGACAGTATAAATGAGAAGGAGAAGAAGAGGACATTTTAGGGTCTT
rJMSF044N05+          GTTATTATTATTGTTGACAGTATAAATGAGAAGGAGAAGAAGAGGACATTTTAGGGTCTT
JMFS088F08-           GTTATTATTATTGTTGACAGTATAAATGAGAAGGAGAAGAAGAGGACATTTTAGGGTCTT
rJMFF025E08+          GTTATTATTATTGTTGACAGTATAAATGAGAAGGAGAAGAAGAGGACATTTTAGGGTCTT
                      ____________________________________________________________
consensus             GTTATTATTATTGTTGACAGTATAAATGAGAAGGAGAAGAAGAGGACATTTTAGGGTCTT
 
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rJMSF016N20+          CTTAGTTTAGATATTCTGAAGAAACCAAACAAAAAAAAGGGGATATTTTTAACTTACCAT
rJMSF044N05+          CTTAGTTTAGATATTCTGAAGAAACCAAACAAAAAAAAGGGGATATTTTTAACTTACCAT
JMFS088F08-           CTTAGTTTAGATATTCTGAAGAAACCAAACAAAAAAAAGGGGATATTTTTAACTTACCAT
rJMFF025E08+          CTTAGTTTAGATATTCTGAAGAAACCAAACAAAAAAAAGGGGATATTTTTAACTTACCAT
                      ____________________________________________________________
consensus             CTTAGTTTAGATATTCTGAAGAAACCAAACAAAAAAAAGGGGATATTTTTAACTTACCAT
 
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rJMSF016N20+          TTCATTCACATCATCTGCATCCCATCATTGATGTTCAATACATGGATTTGTATGATATGA
rJMSF044N05+          TTCATTCACATCATCTGCATCCCATCATTGATGTTCAATACATGGATTTGTATGATATGA
JMFS088F08-           TTCATTCACATCATCTGCATCCCATCATTGATGTTCAATACATGGATTTGTATGATATGA
rJMFF025E08+          TTCATTCACATCATCTGCATCCCATCATTGATGTTCAATACATGGATTTGTATGATATGA
                      ____________________________________________________________
consensus             TTCATTCACATCATCTGCATCCCATCATTGATGTTCAATACATGGATTTGTATGATATGA
 
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rJMSF016N20+          TGGCTTAGTATCATTGGAGGGTCCCAAAGAAAGGTGTTTCTTTGTGGTTTATTTCTATTT
rJMSF044N05+          TGGCTTAGTATCATTGGAGGGTCCCAAAGAAAGGTGTTTCTTTGTGGTTTATTTCTATTT
JMFS088F08-           TGGCTTAGTATCATTGGAGGGTCCCAAAGAAAGGTGTTTCTTTGTGGTTTATTTCTATTT
rJMFF025E08+          TGGCTTAGTATCATTGGAGGGTCCCAAAGAAAGGTGTTTCTTTGTGGTTTATTTCTATTT
                      ____________________________________________________________
consensus             TGGCTTAGTATCATTGGAGGGTCCCAAAGAAAGGTGTTTCTTTGTGGTTTATTTCTATTT
 
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rJMSF016N20+          TTATTTTTACATT                                               
rJMSF044N05+          TTATTTTTACATTTGTTGCTGGTTCTCCTTCTCTGGCAACA                   
JMFS088F08-           TTATTTTTACATTTGTTGCTGGTTC                                   
rJMFF025E08+          TTATTTTTACATTTGTTGCTGGTTCTCCTTCTCTGGCAACATTTCACCTGTCAATTTCAC
                      ____________________________________________________________
consensus             TTATTTTTACATTTGTTGCTGGTTCTCCTTCTCTGGCAACATTTCACCTGTCAATTTCAC
 
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rJMFF025E08+          AAAATGGATGTAATTTCTCTGTACAATGCTTTTACTCTCTGTTACTTTGCCTCTGCTGTT
                      ____________________________________________________________
consensus             AAAATGGATGTAATTTCTCTGTACAATGCTTTTACTCTCTGTTACTTTGCCTCTGCTGTT