| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF021H06 | Sequence | 527 | 007948 (8) | ref|XP_004249928.1| | 2e-28 | PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Solanu | 662 | 004012 (6) | ref|XP_009625603.1| | 8e-51 | PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like isoform |
| JMFF037C04 | Sequence | 614 | 007948 (8) | 706 | 004012 (6) | ref|XP_011101933.1| | 3e-99 | PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like isoform | |||
| JMFF041P08 | Sequence | 642 | 007948 (8) | 602 | 004012 (6) | ref|XP_011101933.1| | 3e-79 | PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like isoform | |||
| JMSF022I24 | Sequence | 674 | 007948 (8) | ref|XP_004249928.1| | 9e-18 | PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Solanu | 762 | 004012 (6) | ref|XP_011079001.1| | 1e-111 | PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like isoform |
| JMSF032O03 | Sequence | 639 | 007948 (8) | 734 | 004012 (6) | ref|XP_011079001.1| | 1e-107 | PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like isoform | |||
| JMSF038M07 | Sequence | 666 | 007948 (8) | ref|XP_004249928.1| | 2e-62 | PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Solanu | 909 | 004012 (6) | ref|XP_009625603.1| | 5e-99 | PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like isoform |
This contig is upended
. : . : . : . : . : . :
rJMSF022I24+ GCTAATCAGCTTATNGGGAAG
____________________________________________________________
consensus GCTAATCAGCTTATNGGGAAG
. : . : . : . : . : . :
rJMSF032O03+ TAGAAATACCAGGAGCATCTATTCATTGGTATGACAANCCAGAAATGCGAAANC
rJMSF022I24+ GGNCATTAGAAATACCAGGAGCATCTATTCATTGGTATGACAAACCAGAAATGCGAAAAC
rJMFF037C04+ C
rJMSF038M07+ GAAAAC
____________________________________________________________
consensus GGNCATTAGAAATACCAGGAGCATCTATTCATTGGTATGACAAACCAGAAATGCGAAAAC
. : . : . : . : . : . :
rJMSF032O03+ AAAGAAAGATGGGTCACATTACTTTCGTTGGACCCTCAATGGGCATTGTGGAAGCACGGC
rJMSF022I24+ AAAGAAAGATGGGTCACATTACTTTCGTTGGACCCTCAATGGGCATTGTGGAAGCACGGC
rJMFF037C04+ AAAGAAAGATGGGTCACATTACTTTCGTTGGACCCTCAATGGGCATTGTGGAAGCACGGC
rJMSF038M07+ AAAGAAAGATGGGTCACATTACTTTTGTTGGACCCTCAATGGGCATTGTGGAAGCACGGC
____________________________________________________________
consensus AAAGAAAGATGGGTCACATTACTTTCGTTGGACCCTCAATGGGCATTGTGGAAGCACGGC
. : . : . : . : . : . :
rJMSF032O03+ TAAGATCTGCACTCAGAGAAAATATCACGGATAGCCAGCCTTCTGAATCTGTTGCACCGC
rJMSF022I24+ TAAGATCTGCACTCAGAGAAAATATCACGGATAGCCAGCCTTCTGAATCTGTTGCACCGC
rJMFF037C04+ TAAGATCTGCACTCAGAGAAAATATCACGGATAGCCAGCCTTCTGAATCTGTTGCACCGC
rJMSF038M07+ TAAGATCTGCACTCAGAGAAAATATCACGGATAGCCAGCCTTCTGGATCTGTTGCACCCC
____________________________________________________________
consensus TAAGATCTGCACTCAGAGAAAATATCACGGATAGCCAGCCTTCTGAATCTGTTGCACCGC
. : . : . : . : . : . :
rJMSF032O03+ GTGTTGGAATCATAATGGGGTCTGATTCAGATCTTCCTGTTATGAAGGATGCTGCAAAGA
rJMSF022I24+ GTGTTGGAATCATAATGGGGTCTGATTCAGATCTTCCTGTTATGAAGGATGCTGCAAAGA
rJMFF037C04+ GTGTTGGAATCATAATGGGGTCTGATTCAGATCTTCCTGTTATGAAGGATGCTGCAAAGA
rJMFF041P08+ GTGTTGGAATCATAATGGGGTCTGATTCAGATCTTCCTGTTATGAAGGATGCTGCAAAGA
rJMSF038M07+ GTGTTGGAATCATAATGGGGTCTGATTCAGATCTTCCTGTTATGAAGGATGCTGCAAAGA
____________________________________________________________
consensus GTGTTGGAATCATAATGGGGTCTGATTCAGATCTTCCTGTTATGAAGGATGCTGCAAAGA
. : . : . : . : . : . :
rJMSF032O03+ TATTGAAAGAGTTTGATGTGCCTACTGAGGTAAAAATCGTTTCTGCCCATCGGACCCCTG
rJMSF022I24+ TATTGAAAGAGTTTGATGTGCCTACTGAGGTAAAAATCGTTTCTGCCCATCGGACCCCTG
rJMFF037C04+ TATTGAAAGAGTTTGATGTGCCTACTGAGGTAAAAATCGTTTCTGCCCATCGGACCCCTG
rJMFF041P08+ TATTGAAAGAGTTTGATGTGCCTACTGAGGTAAAAATCGTTTCTGCCCATCGGACCCCTG
rJMSF038M07+ TATTGAAAGAGTTTGATGTGCCTACTGAGGTAAAAATCGTTTCTGCCCATCGGACCCCTG
rJMFF021H06+ TG
____________________________________________________________
consensus TATTGAAAGAGTTTGATGTGCCTACTGAGGTAAAAATCGTTTCTGCCCATCGGACCCCTG
. : . : . : . : . : . :
rJMSF032O03+ AAATGATGTATTCCTATGCTCTATCCGCTGTAGAACGTGGCATCCAGGTAATTATTGCTG
rJMSF022I24+ AAATGATGTATTCCTATGCTCTATCCGCTGTAGAACGTGGCATCCAGGTAATTATTGCTG
rJMFF037C04+ AAATGATGTATTCCTATGCTCTATCCGCTGTAGAACGTGGCATCCAGGTAATTATTGCTG
rJMFF041P08+ AAATGATGTATTCCTATGCTCTATCCGCTGTAGAACGTGGCATCCAGGTAATTATTGCTG
rJMSF038M07+ AAATGATGTATTCCTATGCTCTATCCGCTGTAGAACGTGGCATCCAGGTAATTATTGCTG
rJMFF021H06+ AAATGATGTATTCCTATGCTCTATCCGCTGTAGAACGTGGCATCCAGGTAATTATTGCTG
____________________________________________________________
consensus AAATGATGTATTCCTATGCTCTATCCGCTGTAGAACGTGGCATCCAGGTAATTATTGCTG
. : . : . : . : . : . :
rJMSF032O03+ GTGCTGGGGGTGCAGCCCACTTGCCTGGCATGGTTGCTGCATTGACTCCATTACCAGTTA
rJMSF022I24+ GTGCTGGGGGTGCAGCCCACTTGCCTGGCATGGTTGCTGCATTGACTCCATTACCAGTTA
rJMFF037C04+ GTGCTGGGGGTGCAGCCCACTTGCCTGGCATGGTTGCTGCATTGACTCCATTACCAGTTA
rJMFF041P08+ GTGCTGGGGGTGCAGCCCACTTGCCTGGCATGGTTGCTGCATTGACTCCATTACCAGTTA
rJMSF038M07+ GTGCTGGGGGTGCAGCCCACTTGCCTGGCATGGTTGCTGCATTGACTCCGTTACCCGTTA
rJMFF021H06+ GTGCTGGGGGTGCAGCCCACTTGCCTGGCATGGTTGCTGCATTGACTCCGTTACCCGTTA
____________________________________________________________
consensus GTGCTGGGGGTGCAGCCCACTTGCCTGGCATGGTTGCTGCATTGACTCCATTACCAGTTA
. : . : . : . : . : . :
rJMSF032O03+ TTGGAGTTCCAGTACGAGCTTCTGCTCTAGATGGAATGGACTCTCTATTATCTATTGTTC
rJMSF022I24+ TTGGAGTTCCAGTACGAGCTTCTGCTCTAGATGGAATGGACTCTCTATTATCTATTGTTC
rJMFF037C04+ TTGGAGTTCCAGTACGAGCTTCTGCTCTAGATGGAATGGACTCTCTATTATCTATTGTTC
rJMFF041P08+ TTGGAGTTCCAGTACGAGCTTCTGCTCTAGATGGAATGGACTCTCTATTATCTATTGTTC
rJMSF038M07+ TTGGAGTTCCAGTACGAGCTTCTGCGCTAGATGGAATGGACTCTCTATTATCTATTGTTC
rJMFF021H06+ TTGGAGTTCCAGTACGAGCTTCTGCGCTAGATGGAATGGACTCTCTATTATCTATTGTTC
____________________________________________________________
consensus TTGGAGTTCCAGTACGAGCTTCTGCTCTAGATGGAATGGACTCTCTATTATCTATTGTTC
. : . : . : . : . : . :
rJMSF032O03+ AGATGCCAAGAGGGGTCCCGGTTGCAACCGTAGCCATAAACAANGCAACAAATGCGGGTC
rJMSF022I24+ AGATGCCAAGAGGGGTCCCGGTTGCAACCGTAGCCATAAACAATGCAACAAATGCGGGTC
rJMFF037C04+ AGATGCCAAGAGGGGTCCCGGTTGCAACCGTAGCCATAAACAATGCAACAAATGCGGGTC
rJMFF041P08+ AGATGCCAAGAGGGGTCCCGGTTGCAACCGTAGCCATAAACAATGCAACAAATGCGGGTC
rJMSF038M07+ AGATGCCAAGAGGTGTTCCGGTTGCAACCGTAGCCATAAACAATGCAACAAATGCAGGTC
rJMFF021H06+ AGATGCCAAGAGGTGTTCCGGTTGCAACCGTAGCCATAAACAATGCAACAAATGCAGGTC
____________________________________________________________
consensus AGATGCCAAGAGGGGTCCCGGTTGCAACCGTAGCCATAAACAATGCAACAAATGCGGGTC
. : . : . : . : . : . :
rJMSF032O03+ TGTTGGCAGTGAGATTATTAGGGATCANCGACACAAACCTGCAAGCAAGAATGGCTCAAT
rJMSF022I24+ TGTTGGCAGTGAGATTATTAGGGATCAGCGACACAAACCTGCAAGCAAGAATGGCTCAAT
rJMFF037C04+ TGTTGGCAGTGAGATTATTAGGGATCAGCGACACAAACCTGCAAGCAAGAATGGCTCAAT
rJMFF041P08+ TGTTGGCAGTGAGATTATTAGGGATCAGCGACACAAACCTGCAAGCAAGAATGGCTCAAT
rJMSF038M07+ TGTTGGCAGTGAGATTATTAGGGATCAGCGACACGAACCTGCAAGCAAGAATGGCTCAAT
rJMFF021H06+ TGTTGGCAGTGAGATTATTAGGGATCAGCGACACGAACCTGCAAGCAAGAATGGCTCAAT
____________________________________________________________
consensus TGTTGGCAGTGAGATTATTAGGGATCAGCGACACAAACCTGCAAGCAAGAATGGCTCAAT
. : . : . : . : . : . :
rJMSF032O03+ ATCNAGAAGACAGACGAGACGAGGTNTTGGTCAAAGCAGAGAGGCTGGGAAAAGGCGGCT
rJMSF022I24+ ATCAAGAAGACAGACGAGACGAGGTGTTGGTCAAAGCAGAGAGGCTGGGAAAAGGCGGCT
rJMFF037C04+ ATCAAGAAGACAGACGAGACGAGGTGTTGGTCAAAGCAGAGAGGCTGGGAAAAGGCGGCT
rJMFF041P08+ ATCAAGAAGACAGACGAGACGAGGTGTTGGTCAAAGCAGAGAGGCTGGGAAAAGGCGGCT
rJMSF038M07+ ATCAAGAAGACAGACGAGACGAGGTGTTGGTCAAAGCAGAGAGGCTGGAAAAAGGCGGCT
rJMFF021H06+ ATCAAGAAGACAGACGAGACGAGGTGTTGGTCAAAGCAGAGAGGCTGGAAAAAGGCGGCT
____________________________________________________________
consensus ATCAAGAAGACAGACGAGACGAGGTGTTGGTCAAAGCAGAGAGGCTGGGAAAAGGCGGCT
. : . : . : . : . : . :
rJMSF032O03+ GGGAAGATTACCTAAATTCTTAGCCCGGATTCAACAACTCCAAACANTATACCACAACCC
rJMSF022I24+ GGGAAGATTACCTAAATTCTTAGCCCGGATTCAACAACTCCAAACATTATACCACAACCC
rJMFF037C04+ GGGAAGATTACCTAAATTCTTAGCCCGGATTCAACAACTCCAAACATTATACCACAACCC
rJMFF041P08+ GGGAAGATTACCTAAATTCTTAGCCCGGATTCAACAACTCCAAACATTATACCACAACCC
rJMSF038M07+ GGGAAGAGTACCTAAATTCTTAGCCCGGATTCAACAACTCCAAACATTATACCACAACCC
rJMFF021H06+ GGGAAGAGTACCTAAATTCTTAGCCCGGATTCAACAACTCCAAACATTATACCACAACCC
____________________________________________________________
consensus GGGAAGATTACCTAAATTCTTAGCCCGGATTCAACAACTCCAAACATTATACCACAACCC
. : . : . : . : . : . :
rJMSF032O03+ CCCTNTCCAGATTCAATTT
rJMSF022I24+ CCCTTTCCAGATTCAATTT
rJMFF037C04+ CCCTTTCCAGATTCAATTTTGAGGATCACACAAGGCCAAAAGAAT
rJMFF041P08+ CCCTTTCCAGATTCAATTTTGAGGATCACACAAGGCCAAAAGAATTGCCTTTTAAAATAT
rJMSF038M07+ CCCTTTCCAGATTCAATTTTGAGGATCACACAAGGCCAAAAGAATTGCCTTTTAAAATAT
rJMFF021H06+ CCCTTTCCAGATTCAATTTTGAGGATCACACAAGGCCAAAAGAATTGCCTTTTAAAATAT
____________________________________________________________
consensus CCCTTTCCAGATTCAATTTTGAGGATCACACAAGGCCAAAAGAATTGCCTTTTAAAATAT
. : . : . : . : . : . :
rJMSF038M07+ CCCTGGGGGCATTTTCATGGGTTTAGGAGTAGGGAATCACAACCAATCCCATTCCCACTT
rJMFF021H06+ CCCTGGGGGCATTTTCATGGGTTTAGGAGTAGGGAATCACAACCAATCCCATTCCCACTT
____________________________________________________________
consensus CCCTGGGGGCATTTTCATGGGTTTAGGAGTAGGGAATCACAACCAATCCCATTCCCACTT
. : . : . : . : . : . :
rJMSF038M07+ AAAACCCATTGATTTGATTCCTGTCTGAAGTGGGGTTTTATCTCCATTTGATTCAAACAT
rJMFF021H06+ AAAACCCATTGATTTGATTCCTGTCTGAAGTGGGGTTTTATCTCCATTTGATTCAAACAT
____________________________________________________________
consensus AAAACCCATTGATTTGATTCCTGTCTGAAGTGGGGTTTTATCTCCATTTGATTCAAACAT
. : . : . : . : . : . :
rJMSF038M07+ GTCACATATACATGACAGAAGAGTTATCTCATTT
rJMFF021H06+ GTCACATATACATGACAGAAGAGTTATCTCATTTTGTCTCGAGAAATAATGCAAAATGAA
____________________________________________________________
consensus GTCACATATACATGACAGAAGAGTTATCTCATTTTGTCTCGAGAAATAATGCAAAATGAA