Contig 004001:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF019H18-                                   ATTGATTTCTGTCTCTTCGTCGTTCGATCGAACCGA
JMFF019N04-                                   ATTGATTTCTGTCTCTTCGTCGTTCGATCGAACCGA
                      ____________________________________________________________
consensus                                     ATTGATTTCTGTCTCTTCGTCGTTCGATCGAACCGA
 
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JMFF019H18-           CTACCTTCACTAATCACTACCGTATTATCCTCACCGATTCCAAGAATACAGGTAGAAAAG
JMFF019N04-           CTACCTTCACTAATCACTACCGTATTATCCTCACCGATTCCAAGAATACAGGTAGAAAAG
                      ____________________________________________________________
consensus             CTACCTTCACTAATCACTACCGTATTATCCTCACCGATTCCAAGAATACAGGTAGAAAAG
 
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JMFF019H18-           ATTAAAGATTTTCAGAAAAAAAATTGAGCTGAAATTCAAGTATTCAACCGCAGAGAAGAG
JMFF019N04-           ATTAAAGATTTTCAGAAAAAAAATTGAGCTGAAATTCAAGTATTCAACCGCAGAGAAGAG
                      ____________________________________________________________
consensus             ATTAAAGATTTTCAGAAAAAAAATTGAGCTGAAATTCAAGTATTCAACCGCAGAGAAGAG
 
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JMFF019H18-           ATTAGGGAAGAAATATGAGCAATCTGAGGGCAATTTGTAGACCTCATGCAGTTTTCTCTT
JMFF019N04-           ATTAGGGAAGAAATATGAGCAATCTGAGGGCAATTTGTAGACCTCATGCAGTTTTCTCTT
                      ____________________________________________________________
consensus             ATTAGGGAAGAAATATGAGCAATCTGAGGGCAATTTGTAGACCTCATGCAGTTTTCTCTT
 
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JMFF019H18-           CAATCACCTGTTGCTGCAGAGGACTGTTGGTCAAATCGACGGTTCGCGTTCCGGTTCGGA
JMFF019N04-           CAATCACCTGTTGCTGCAGAGGACTGTTGGTCAAATCGACGGTTCGCGTTCCGGTTCGGA
                      ____________________________________________________________
consensus             CAATCACCTGTTGCTGCAGAGGACTGTTGGTCAAATCGACGGTTCGCGTTCCGGTTCGGA
 
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JMFF019H18-           TCCCTAGCCCCGGACCTCGATGGAGCACAAAGCCGCCGGCGTTCTCGACGTGGTTCGATT
JMFF019N04-           TCCCTAGCCCCGGACCTCGATGGAGCACAAAGCCGCCGGCGTTCTCGACGTGGTTCGATT
                      ____________________________________________________________
consensus             TCCCTAGCCCCGGACCTCGATGGAGCACAAAGCCGCCGGCGTTCTCGACGTGGTTCGATT
 
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JMFF019H18-           CGTCCAGGAGAATTGAGCCCTGGGATGGAGTGAATAGGCGGCAGAGGAAGAGCATAGCTA
JMFF019N04-           CGTCCAGGAGAATTGAGCCCTGGGATGGAGTGAATAGGCGGCAGAGGAAGAGCATAGCTA
                      ____________________________________________________________
consensus             CGTCCAGGAGAATTGAGCCCTGGGATGGAGTGAATAGGCGGCAGAGGAAGAGCATAGCTA
 
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JMFF019H18-           CTAATTCATACAATTGGAACAACTCCAAATCCCCTTACGAAACCCTCGAGTTGGAAGGAG
JMFF019N04-           CTAATTCATACAATTGGAACAACTCCAAATCCCCTTACGAAACCCTCGAGTTGGAAGGAG
                      ____________________________________________________________
consensus             CTAATTCATACAATTGGAACAACTCCAAATCCCCTTACGAAACCCTCGAGTTGGAAGGAG
 
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JMFF019H18-           ATGCAGATGAAGAGCAAATAAAGGTGGCATACAGACG-TTTGGTGAAGTTCTACCATCCA
JMFF019N04-           ATGCAGATGAAGAGCAAATAAAGGTGGCATACAGACGTTTTGGTGAAGTTCTACCATCCA
rJMFF019H18+                                                              ACCATCCA
                      ____________________________________________________________
consensus             ATGCAGATGAAGAGCAAATAAAGGTGGCATACAGACGTTTTGGTGAAGTTCTACCATCCA
 
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JMFF019H18-           GATGTTTATGATGGCAGTGGGACTCTTGAAGAGGGGGAAACTGCTGAAACA         
JMFF019N04-           GATGTTTATGATGGCAGTGGGACTCTTGAAGAGGGGGAAACTGCTGAAACACGATTTATT
rJMFF019N04+                                            GGGAAACTGCTGAAACACGATTTATT
rJMFF019H18+          GATGTTTATGATGGCAGTGGGACTCTTGAAGAGGGGGAAACTGCTGAAACACGATTTATT
                      ____________________________________________________________
consensus             GATGTTTATGATGGCAGTGGGACTCTTGAAGAGGGGGAAACTGCTGAAACACGATTTATT
 
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JMFF019N04-           AAGATTCAAGCTGCTTATGAGTTGCTGCTAGA                            
rJMFF019N04+          AAGATTCAAGCTGCTTATGAGTTGCTGCTAGATAAAGAACAACGAAGGCAATATGACAAA
rJMFF019H18+          AAGATTCAAGCTGCTTATGAGTTGCTGCTAGATAAAGAACAACGAAGGCAATATGACAAA
                      ____________________________________________________________
consensus             AAGATTCAAGCTGCTTATGAGTTGCTGCTAGATAAAGAACAACGAAGGCAATATGACAAA
 
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rJMFF019N04+          GAAAATCGGGTGAACCNTATGAAGGCATCCCAAGCATGGATGGAATGGCTTATTAAAAAG
rJMFF019H18+          GAAAATCGGGTGAACCCTATGAAGGCATCCCAAGCATGGATGGAATGGCTTATTAAAAAG
                      ____________________________________________________________
consensus             GAAAATCGGGTGAACCCTATGAAGGCATCCCAAGCATGGATGGAATGGCTTATTAAAAAG
 
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rJMFF019N04+          CGGAAAGCATTTGACCAACGGGGTGATATGGCTATTGCAGCATGGGCTGAACAGCAGCAG
rJMFF019H18+          CGGAAAGCATTTGACCAACGGGGTGATATGGCTATTGCAGCATGGGCTGAACAGCAGCAG
                      ____________________________________________________________
consensus             CGGAAAGCATTTGACCAACGGGGTGATATGGCTATTGCAGCATGGGCTGAACAGCAGCAG
 
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rJMFF019N04+          CGTGAATTGAATCTTAAAGCACGCCGCCTTGCACGATCAAAGATGGATCCTGAAGAGGAG
rJMFF019H18+          CGTGAATTGAATCTTAAAGCACGCCGCCTTGCACGATCAAAGATGGATCCTGAAGAGGAG
                      ____________________________________________________________
consensus             CGTGAATTGAATCTTAAAGCACGCCGCCTTGCACGATCAAAGATGGATCCTGAAGAGGAG
 
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rJMFF019N04+          AGGAAAATACTGGAGAAAGAGAGGAAGGCATCATTGGAAAATGTTAACACTACTTTGAGG
rJMFF019H18+          AGGAAAATACTGGAGAAAGAGAGGAAGGCATCATTGGAAAATGTTAACACTACTTTGAGG
                      ____________________________________________________________
consensus             AGGAAAATACTGGAGAAAGAGAGGAAGGCATCATTGGAAAATGTTAACACTACTTTGAGG
 
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rJMFF019N04+          CGGCATACACTTGTGTTACGGAAAAGGGATATAATGCGAAGAAAAGCAGAAGAGGAGAAG
rJMFF019H18+          CGGCATACACTTGTGTTACGGAAAAGGGATATAATGCGAAGAAAAGCAGAAGAGGAGAAG
                      ____________________________________________________________
consensus             CGGCATACACTTGTGTTACGGAAAAGGGATATAATGCGAAGAAAAGCAGAAGAGGAGAAG
 
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rJMFF019N04+          AAAAGGTTGATTAACCAGCTGCTGGCAGCAGAGGGACTTGAGCTTGAAGAGGAGGATGAT
rJMFF019H18+          AAAAGGTTGATTAACCAGCTGCTGGCAGCAGAGGGACTTGAGCTTGAAGAGGAGGATGAT
                      ____________________________________________________________
consensus             AAAAGGTTGATTAACCAGCTGCTGGCAGCAGAGGGACTTGAGCTTGAAGAGGAGGATGAT
 
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rJMFF019N04+          AAAAGCTTGTAGAATATACACCACCCTGTTATAGCCGCTATACTTTAAACGTTGCTTGGG
rJMFF019H18+          AAAAGCTTGTAGAATATACACCACCCTGTTATAGCCGCTATACTTTAAACGTTGCTTGGG
                      ____________________________________________________________
consensus             AAAAGCTTGTAGAATATACACCACCCTGTTATAGCCGCTATACTTTAAACGTTGCTTGGG
 
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rJMFF019N04+          GGTATACTTGTCTGTTTATTGTACATGGAAGATGAAAGTTGCATTGTACATTGGAAAACT
rJMFF019H18+          GGTATACTTGTCTGTTTATTGTACATGGAAGATGAAAGTTGCATTGTACATTGGAAAACT
                      ____________________________________________________________
consensus             GGTATACTTGTCTGTTTATTGTACATGGAAGATGAAAGTTGCATTGTACATTGGAAAACT
 
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rJMFF019N04+          CTTGAAATGTGCAAAGATGAAAGTCCATGAATTCGGTTCTTTCATCGTTCACTTGTTCCA
rJMFF019H18+          CTTGAAATGTGCAAAGATGAAAGTCCATGAATTCGGTTCTTTCATCGTTCACTTGTTCCA
                      ____________________________________________________________
consensus             CTTGAAATGTGCAAAGATGAAAGTCCATGAATTCGGTTCTTTCATCGTTCACTTGTTCCA
 
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rJMFF019N04+          GTTCTTATGGGAAAACTCCTGAAATGTTCCTTGTAATTGAATGTTGATGCATAGGCATCT
rJMFF019H18+          GTTCTTATGGGAAAACTCCTGAAATGTTCCTTGTAATTGAATGTTGATGCATAGGCATCT
                      ____________________________________________________________
consensus             GTTCTTATGGGAAAACTCCTGAAATGTTCCTTGTAATTGAATGTTGATGCATAGGCATCT
 
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rJMFF019N04+          ATATTTCACATTCTCCCTTCAACTCCAATTATTTGTAAGGGATTGAGTAGGGAAAGATAT
rJMFF019H18+          ATATTTCACATTCTCCCTTCAACTCCAATTATTTGTAAGGGATTGAGTAGGGAAAGATAT
                      ____________________________________________________________
consensus             ATATTTCACATTCTCCCTTCAACTCCAATTATTTGTAAGGGATTGAGTAGGGAAAGATAT