Contig 003995:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018H15Sequence588003995 (2)ref|XP_004237551.1|3e-56PREDICTED: tetraspanin-6 [Solanum lycopersicum]766003995 (2)ref|XP_004237551.1|1e-89PREDICTED: tetraspanin-6 [Solanum lycopersicum]

Alignment

This contig is upended


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JMFF018H15-                                                    ATTTATTCATTTATTTGAT
                      ____________________________________________________________
consensus                                                      ATTTATTCATTTATTTGAT
 
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JMFF018H15-           TTTTATACAGATTTTTGAACTCTTCGTTCCACACTTAAGAAAAACGTATAGTACAAAGCT
                      ____________________________________________________________
consensus             TTTTATACAGATTTTTGAACTCTTCGTTCCACACTTAAGAAAAACGTATAGTACAAAGCT
 
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JMFF018H15-           GAAGAAGATCAGAAAACAATTCGAAAACATTATGTACCTTAGATTTAGCAACACAGTGAT
                      ____________________________________________________________
consensus             GAAGAAGATCAGAAAACAATTCGAAAACATTATGTACCTTAGATTTAGCAACACAGTGAT
 
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JMFF018H15-           AGGTTTCTTGAATCTCCTCACTCTGCTAGCGTCGATTCCGATCATCGGCGCCGGACTATG
                      ____________________________________________________________
consensus             AGGTTTCTTGAATCTCCTCACTCTGCTAGCGTCGATTCCGATCATCGGCGCCGGACTATG
 
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JMFF018H15-           GCTGGCGAGGAGCAGCACAACCTGCGAGAAGTTCCTCCAGACGCCGATGCTCATCATCGG
                      ____________________________________________________________
consensus             GCTGGCGAGGAGCAGCACAACCTGCGAGAAGTTCCTCCAGACGCCGATGCTCATCATCGG
 
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JMFF018H15-           CTTCATAATCCTCGTGGTTTCGCTCACCGGTTTCATAGGCGCGTGCTTCCACGTTGCATG
                      ____________________________________________________________
consensus             CTTCATAATCCTCGTGGTTTCGCTCACCGGTTTCATAGGCGCGTGCTTCCACGTTGCATG
 
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JMFF018H15-           GGCGCTGTGGTTGTACCTCTTCGTCGTGCTGCTCATCGTACTCGCACTTCTGGGGTTCAC
                      ____________________________________________________________
consensus             GGCGCTGTGGTTGTACCTCTTCGTCGTGCTGCTCATCGTACTCGCACTTCTGGGGTTCAC
 
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JMFF018H15-           CATCTTCGGGTTCGTCGTCGCCAGCCCTGGCGGCGCCGCCGCCGTCCCCGGCAGGGCGTA
rJMFF018H15+                        TCGTCGCCAGCCCTGGCGGCGCCGCCGCCGTCCCCGGCAGGGCGTA
                      ____________________________________________________________
consensus             CATCTTCGGGTTCGTCGTCGCCAGCCCTGGCGGCGCCGCCGCCGTCCCCGGCAGGGCGTA
 
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JMFF018H15-           CAGAGAGTACCACCTCGGGAAATATTCGCCGTGGCTCAAGGATAGGGTGCGGGATCCCCG
rJMFF018H15+          CAGAGAGTACCACNTCGGGAAATATTCGCCGTGGCTCAAGGATAGGGTGCGGGATCCCCG
                      ____________________________________________________________
consensus             CAGAGAGTACCACCTCGGGAAATATTCGCCGTGGCTCAAGGATAGGGTGCGGGATCCCCG
 
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JMFF018H15-           TTCTTGGACCACTATCAGGGCTTGTATTTTGGGTTCAAAAACTTGCGCTACTGTTGTTAA
rJMFF018H15+          TTCTTGGACCACTATCAGGGCTTGTATTTTGGGTTCAAAAACTTGCGCTACTGTTGTTAA
                      ____________________________________________________________
consensus             TTCTTGGACCACTATCAGGGCTTGTATTTTGGGTTCAAAAACTTGCGCTACTGTTGTTAA
 
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JMFF018H15-           TTGGACTCCCTATGATTTTCTCTTCAGAG                               
rJMFF018H15+          TTGGACTCCCTATGATTTTCTCTTCAGAGACATGTCCCCCATACAGTCGGGGTGTTGTAA
                      ____________________________________________________________
consensus             TTGGACTCCCTATGATTTTCTCTTCAGAGACATGTCCCCCATACAGTCGGGGTGTTGTAA
 
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rJMFF018H15+          GCCGCCGACTTCATGCAACTCTGCAGGGACGACGGTGATGGCGGAGGATCCGGATTGTTA
                      ____________________________________________________________
consensus             GCCGCCGACTTCATGCAACTCTGCAGGGACGACGGTGATGGCGGAGGATCCGGATTGTTA
 
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rJMFF018H15+          CCGGTGGAGCAGCGACGCGAATTTGCTTTGCTACGAGTGCGATTCGTGCAAGGCGGCGGT
                      ____________________________________________________________
consensus             CCGGTGGAGCAGCGACGCGAATTTGCTTTGCTACGAGTGCGATTCGTGCAAGGCGGCGGT
 
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rJMFF018H15+          GTTAGAGGATGTGAAGAGGGATTGGCAGAAGATATCTGTGCTTAACATCGTCGTCCTGGT
                      ____________________________________________________________
consensus             GTTAGAGGATGTGAAGAGGGATTGGCAGAAGATATCTGTGCTTAACATCGTCGTCCTGGT
 
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rJMFF018H15+          TTTCCTTATAGGCATATACTCCATTGGTTGCTGTGCTTTCCAGAATGCAAAGAGGGCTGA
                      ____________________________________________________________
consensus             TTTCCTTATAGGCATATACTCCATTGGTTGCTGTGCTTTCCAGAATGCAAAGAGGGCTGA
 
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rJMFF018H15+          GACCGAGTACGAGCATGGCCCCAACCGGATGTCCAAACTCCGACCCAGATGGGATTTCCA
                      ____________________________________________________________
consensus             GACCGAGTACGAGCATGGCCCCAACCGGATGTCCAAACTCCGACCCAGATGGGATTTCCA
 
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rJMFF018H15+          TTGGTGGAGATGGCTGCACTACAAGAGACACCGGCTTACCTAAACCAAGGACCAGAGCTC
                      ____________________________________________________________
consensus             TTGGTGGAGATGGCTGCACTACAAGAGACACCGGCTTACCTAAACCAAGGACCAGAGCTC
 
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rJMFF018H15+          CTCCTCTACAAGCTTGTGTTTTATGCAAGAGATGGAGACAATAAAACCCTTTTGTTATAT
                      ____________________________________________________________
consensus             CTCCTCTACAAGCTTGTGTTTTATGCAAGAGATGGAGACAATAAAACCCTTTTGTTATAT
 
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rJMFF018H15+          AGACAGATTTGTTTTTTTAGCTTTACCCAACTCTTGCTTTTTCATCACTACTTTAATGTC
                      ____________________________________________________________
consensus             AGACAGATTTGTTTTTTTAGCTTTACCCAACTCTTGCTTTTTCATCACTACTTTAATGTC
 
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rJMFF018H15+          TTTACACATTGATATAATGTTTATATATGCATAAAGACAGAATGGACAAGATCANGAAAA
                      ____________________________________________________________
consensus             TTTACACATTGATATAATGTTTATATATGCATAAAGACAGAATGGACAAGATCANGAAAA