Contig 003979:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001K11Sequence523003979 (14)gb|AFK39830.1|1e-69unknown [Lotus japonicus]594003979 (14)gb|AFK39830.1|3e-69unknown [Lotus japonicus]
JMFF013G02Sequence599003979 (14)gb|AFK39830.1|4e-69unknown [Lotus japonicus]642003979 (14)gb|AFK39830.1|6e-69unknown [Lotus japonicus]
JMFF018P20Sequence562003979 (14)gb|AFK39830.1|2e-69unknown [Lotus japonicus]650003979 (14)gb|AFK39830.1|2e-69unknown [Lotus japonicus]
JMFF022F08Sequence473003979 (14)ref|XP_002279938.1|1e-68PREDICTED: eukaryotic translation initiation factor 1A [Vitis vinifera] ref|XP_716003979 (14)gb|AFK39830.1|5e-68unknown [Lotus japonicus]
JMFF033E12Sequence338003979 (14)ref|XP_004229971.1|1e-37PREDICTED: eukaryotic translation initiation factor 1A-like [Solanum lycopersic
JMFN001B05Sequence516003979 (14)gb|AFK39830.1|1e-69unknown [Lotus japonicus]
JMFN010F03Sequence624003979 (14)gb|AFK39830.1|5e-69unknown [Lotus japonicus]
JMFN041L10Sequence628003979 (14)gb|AFK39830.1|5e-72unknown [Lotus japonicus]
JMSF029J10Sequence619003979 (14)gb|AFK39830.1|5e-69unknown [Lotus japonicus]564003979 (14)gb|AFK39830.1|2e-69unknown [Lotus japonicus]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN041L10- ACTAGTCTTGAGXXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus ACTAGTCTTGAGNNNNNNNNNNNNNNNNN
 
. : . : . : . : . : . :
JMFN041L10- XXXXXAAAAAGGTAACTCAGTTTTATTCCATCCATTTTATCGAAAGCTTAACTTCATACT
                      ____________________________________________________________
consensus NNNNNAAAAAGGTAACTCAGTTTTATTCCATCCATTTTATCGAAAGCTTAACTTCATACT
 
. : . : . : . : . : . :
JMFN041L10- TGAAATTCAATGCACAAGGCGTCATATATCATTTAAAACATTACAAATTAAATATCCCAG
rJMFF018P20- ATGCACAAGGCGTCATATATCATTTAAAACATTACAAATTAAATATCCCAG
JMFF013G02+ G
rJMFF001K11- AATTAAATATCCCAG
rJMSF029J10- TATCCCAG
JMFF001K11+ CCAG
rJMFF013G02- AGGCGTCATATATCATTTAAAACATTACAAATTAAATATCCCAG
                      ____________________________________________________________
consensus TGAAATTCAATGCACAAGGCGTCATATATCATTTAAAACATTACAAATTAAATATCCCAG
 
. : . : . : . : . : . :
JMFN041L10- TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
rJMFF018P20- TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
JMFF013G02+ TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
rJMFF001K11- TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
rJMSF029J10- TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
JMFF018P20+ AACTCAAATACAAATAAAAATACT
JMFN001B05+ ATAAAAATACT
JMFF001K11+ TTNTANGTATATNGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
JMFN010F03+ TGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
rJMFF013G02- TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
                      ____________________________________________________________
consensus TTCTATGTATATTGAAACCAAACTCCACAGAAATATAACTCAAATACAAATAAAAATACT
 
. : . : . : . : . : . :
JMFN041L10- TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
rJMFF018P20- TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
JMFF013G02+ TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
rJMFF001K11- TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
rJMSF029J10- TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
JMFF018P20+ TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
JMFN001B05+ TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
rJMFF022F08- TTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
JMFF001K11+ TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
JMFN010F03+ TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
JMSF029J10+ TTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
rJMFF013G02- TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
                      ____________________________________________________________
consensus TGAGAGAGTTTTCAGCTTTTTAAATCTTATCAATGTCCTCGTCCTCAAACTCCAGGTAAT
 
. : . : . : . : . : . :
JMFN041L10- CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
rJMFF018P20- CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMFF013G02+ CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
rJMFF001K11- CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
rJMSF029J10- CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMFF018P20+ CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMFN001B05+ CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMFF022F08+ ATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
rJMFF022F08- CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMFF001K11+ CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMFN010F03+ CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
JMSF029J10+ CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
rJMFF013G02- CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
                      ____________________________________________________________
consensus CATCAGCCGCGCCCTCATCCTCTTCATCCAACCCACCAGCAATACCCTCATTGAGCCTAG
 
. : . : . : . : . : . :
JMFN041L10- TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
rJMFF018P20- TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFF013G02+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
rJMFF001K11- TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
rJMSF029J10- TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFF018P20+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFN001B05+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFF022F08+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
rJMFF022F08- TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFF033E12+ TTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFF001K11+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMFN010F03+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
JMSF029J10+ TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
rJMFF013G02- TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
                      ____________________________________________________________
consensus TGTTCTCAGGCAACTCTCCATAAGCCTTCAACAATCTGGCCTCGTCCGGCATATATTTCA
 
. : . : . : . : . : . :
JMFN041L10- GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
rJMFF018P20- GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMFF013G02+ GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
rJMFF001K11- GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
rJMSF029J10- GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMFF018P20+ GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMFN001B05+ GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMFF022F08+ GAATTACATCGGCCTTATCATC-CTGATAGTCGCGGAGGCCGACGAGGATGATGTCGCCG
rJMFF022F08- GAATTACATCGGCCTTATCATC-CTGATAGTCGCGGAGGCCGACGAGGATGATGTCGCCG
JMFF033E12+ GAATTACATCGGCCTTATCATCTATGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMFF001K11+ GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMFN010F03+ GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
JMSF029J10+ GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
rJMFF013G02- GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
                      ____________________________________________________________
consensus GAATTACATCGGCCTTATCATC-CTGATAGTCACGGAGGCCGACGAGGATGATGTCGCCG
 
. : . : . : . : . : . :
JMFN041L10- GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
rJMFF018P20- GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFF013G02+ GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
rJMFF001K11- GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
rJMSF029J10- GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFF018P20+ GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFN001B05+ GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFF022F08+ GCGGCGATCCAGACCTTCTCGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
rJMFF022F08- GCGGCGATCCAGACCTTCTCGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFF033E12+ GCGGCGATCCAGNCCTTCTTGNGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFF001K11+ GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMFN010F03+ GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
JMSF029J10+ GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
rJMFF013G02- GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
                      ____________________________________________________________
consensus GCGGCGATCCAGACCTTCTTGTGCATCTTGCCGCGGATGTGGCAGAGACGCTTGGTGCCG
 
. : . : . : . : . : . :
JMFN041L10- TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
rJMFF018P20- TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFF013G02+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
rJMFF001K11- TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
rJMSF029J10- TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFF018P20+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFN001B05+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFF022F08+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
rJMFF022F08- TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFF033E12+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFF001K11+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMFN010F03+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
JMSF029J10+ TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
rJMFF013G02- TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
                      ____________________________________________________________
consensus TCGATGCACATGGCCTCACAGCGGCCGTTGCCGAGCATGCGGAGGACCTGAGCGTACTCC
 
. : . : . : . : . : . :
JMFN041L10- TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
rJMFF018P20- TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMFF013G02+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
rJMFF001K11- TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
rJMSF029J10- TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMFF018P20+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMFN001B05+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMFF022F08+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
rJMFF022F08- TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMFF033E12+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTNTCATCATCGGCTTCGTTCTTCCCTCTC
JMFF001K11+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMFN010F03+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
JMSF029J10+ TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
rJMFF013G02- TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
                      ____________________________________________________________
consensus TGGCCGTCCTCCTTGAAGACGAGCTCTCTCTTCTCATCATCGGCTTCGTTCTTCCCTCTC
 
. : . : . : . : . : . :
rJMFF018P20- TTCCTATTCTTACCTCCCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
JMFF013G02+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
rJMFF001K11- TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
rJMSF029J10- TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
JMFF018P20+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
JMFN001B05+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
JMFF022F08+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATG
rJMFF022F08- TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATG
JMFF033E12+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGC
JMFF001K11+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGC
JMFN010F03+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATG
JMSF029J10+ TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
rJMFF013G02- TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
                      ____________________________________________________________
consensus TTCCTATTCTTACCT-CCCTTTCCCTTGTTCTTCGGCATGCTGACTCGAGATTGGAAACC
 
. : . : . : . : . : . :
rJMFF018P20- CTAACCCAAACAGCTCTGGTTTTTGTTTCCGAGGTTTTGGATGCTTTTAAAAGGAACAAT
JMFF013G02+ CTAACCCAAACAGCTCTGGTTTTTGTTTCCGAGGTTTTGGATGCTTTTAAAAGGAACAAT
rJMFF001K11- CTAACCCAAACAGCTCT
rJMSF029J10- CTAACCCAAACAGCTCT
JMFF018P20+ CTAACCCAAACAGCTCTGGTTTTTGTTTCCGAGGTTTTGGATGCTTTTAAAAGGAACAAT
JMFN001B05+ CTAACCCAAACAGCTCTGGTTTTTGTT
JMSF029J10+ CTAACCCAAACAGCTCT
rJMFF013G02- CTAACCCAAACAGCTCTGGTTTTTGTTTCCGAGGTTTTGGATGCTTTTAAAAGGAACAAT
                      ____________________________________________________________
consensus CTAACCCAAACAGCTCTGGTTTTTGTTTCCGAGGTTTTGGATGCTTTTAAAAGGAACAAT