Contig 003977:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013D12Sequence538021657ref|XP_006349912.1|1e-80PREDICTED: heat stress transcription factor A-5-like [Solanum tuberosum]758003977 (2)ref|XP_010314852.1|5e-44PREDICTED: heat stress transcription factor A-5-like [Solanum lycopersicum]
JMSF015I03Sequence249022079775003977 (2)ref|XP_009612973.1|209PREDICTED: heat stress transcription factor A-5 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF015I03+                                                               AAATGAG
                      ____________________________________________________________
consensus                                                                  AAATGAG
 
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rJMSF015I03+          AACCGCTGATGTTCTATATGCTCCAGAGACAGTCGAGCTTTCAGATACAGGAACATCATT
                      ____________________________________________________________
consensus             AACCGCTGATGTTCTATATGCTCCAGAGACAGTCGAGCTTTCAGATACAGGAACATCATT
 
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rJMSF015I03+          TACCTTGAAGATGGATTCATCTTTGACCGGTAAAGCAAGTCCGAGACTCAACTCGTTTCA
rJMFF013D12+                                TTGACCGGTAAAGCAAGTCCGAGACTCAACTCGTTTCA
                      ____________________________________________________________
consensus             TACCTTGAAGATGGATTCATCTTTGACCGGTAAAGCAAGTCCGAGACTCAACTCGTTTCA
 
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rJMSF015I03+          ACATACCTTGACTGCTAATGAGGAAGTCGATGGGCAAATGTCCTGTCATTTGAATCTTAC
rJMFF013D12+          ACATACCTTGACTGCTAATGAGGAAGTCGATGGGCAAATGTCCTGTCATTTGAATCTTAC
                      ____________________________________________________________
consensus             ACATACCTTGACTGCTAATGAGGAAGTCGATGGGCAAATGTCCTGTCATTTGAATCTTAC
 
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rJMSF015I03+          TCTAGCTTCTTCTACACTGCAAGTTGACTCTAACCCACATTCAGCCCGAACGCCACAAAT
rJMFF013D12+          TCTAGCTTCTTCTACACTGCAAGTTGACTCTAACCCACATTCAGCCCGAACGCCACAAAT
                      ____________________________________________________________
consensus             TCTAGCTTCTTCTACACTGCAAGTTGACTCTAACCCACATTCAGCCCGAACGCCACAAAT
 
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rJMSF015I03+          GGGCGATATGATTAGATGTTCAGAGTCAAGATCCAACATTGATGGCAACGTAGCAGATCA
rJMFF013D12+          GGGCGATATGATTAGATGTTCAGAGTCAAGATCCAACATTGATGGCAACGTAGCAGATCA
                      ____________________________________________________________
consensus             GGGCGATATGATTAGATGTTCAGAGTCAAGATCCAACATTGATGGCAACGTAGCAGATCA
 
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rJMSF015I03+          TAGCATTCCACAGAAGACCAGAAACCGTTCTATAGATAATGCCAATTTGTCTTCTGCTCA
rJMFF013D12+          TAGCATTCCACAGAAGACCAGAAACCCTTCTATAGATAATGCCAATTTGTCTTCTGCTCA
                      ____________________________________________________________
consensus             TAGCATTCCACAGAAGACCAGAAACCGTTCTATAGATAATGCCAATTTGTCTTCTGCTCA
 
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rJMSF015I03+          CAATCCATCAAGTAACAAGCAAGGGTCTGCCACACCTCCGGCCCGAGTGAATGACGTGTT
rJMFF013D12+          CAATCCATCAAGTAACAAGCAAGGGTCTGCCACACCTCCGGCCCGAGTGAATGACGTGTT
                      ____________________________________________________________
consensus             CAATCCATCAAGTAACAAGCAAGGGTCTGCCACACCTCCGGCCCGAGTGAATGACGTGTT
 
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rJMSF015I03+          CTGGGAGCAATTCCTGACAGAAAGGCCAGGTTGCTCTGATAATGAAGAGGCGAGCTCTGG
rJMFF013D12+          CTGGGAGCAATTCCTGACAGAAAGGCCAGGTTGCTCTGATAATGAAGAGGCGAGCTCTGG
                      ____________________________________________________________
consensus             CTGGGAGCAATTCCTGACAGAAAGGCCAGGTTGCTCTGATAATGAAGAGGCGAGCTCTGG
 
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rJMSF015I03+          TTTACGAGCAGGTTCATATGATGAGCAAGAGGATAGAAGATCAAATCAGGGAATAGCTCG
rJMFF013D12+          TTTACGAGCAGGTTCATATGATGAGCAAGAGGATAGAAGATCAAATTAGGGAATAGCTCG
                      ____________________________________________________________
consensus             TTTACGAGCAGGTTCATATGATGAGCAAGAGGATAGAAGATCAAATTAGGGAATAGCTCG
 
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rJMSF015I03+          AAACACAAGCAGCATGGATAAACTTACTCTCTAAG                         
rJMFF013D12+          AAACACAAGCAGCATGGATAAACTTACTCTCTAAGGTCAAGATTCTTCCCCCTATTTCCA
                      ____________________________________________________________
consensus             AAACACAAGCAGCATGGATAAACTTACTCTCTAAGGTCAAGATTCTTCCCCCTATTTCCA
 
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rJMFF013D12+          TCACTCTTCAATTTATAGCTTGTAAAAATAATTTCAGTCTACTTGCAATTTTTTTGTGAT
                      ____________________________________________________________
consensus             TCACTCTTCAATTTATAGCTTGTAAAAATAATTTCAGTCTACTTGCAATTTTTTTGTGAT
 
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rJMFF013D12+          AAATATCATGATATCAATCTTTTTTGCATTTAGAAAAGATTTGCAAGCATTTTCGTCCAA
                      ____________________________________________________________
consensus             AAATATCATGATATCAATCTTTTTTGCATTTAGAAAAGATTTGCAAGCATTTTCGTCCAA
 
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rJMFF013D12+          TGGTTTATATCATTGTACATTAGCTACTCAAAACCGTGTATTGGGGTTGACCATTTGTAC
                      ____________________________________________________________
consensus             TGGTTTATATCATTGTACATTAGCTACTCAAAACCGTGTATTGGGGTTGACCATTTGTAC
 
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rJMFF013D12+          ATATATTAATATTTGTTCCCCAAAACATTAGGGGAAGCTTAGATTCAGTTCAATTAGGGT
                      ____________________________________________________________
consensus             ATATATTAATATTTGTTCCCCAAAACATTAGGGGAAGCTTAGATTCAGTTCAATTAGGGT