| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005C17 | Sequence | 485 | 003973 (8) | emb|CDP01561.1| | 1e-74 | unnamed protein product [Coffea canephora] | 726 | 003973 (8) | gb|AIL29211.1| | 3e-111 | 3-hydroxyacyl-CoA dehydratase [Camellia oleifera] |
| JMFF012A04 | Sequence | 586 | 003973 (8) | emb|CDP01561.1| | 4e-90 | unnamed protein product [Coffea canephora] | 676 | 003973 (8) | gb|AIL29211.1| | 3e-95 | 3-hydroxyacyl-CoA dehydratase [Camellia oleifera] |
| JMFF019P08 | Sequence | 575 | 003973 (8) | emb|CDP01561.1| | 9e-69 | unnamed protein product [Coffea canephora] | 665 | 003973 (8) | gb|AIL29211.1| | 3e-110 | 3-hydroxyacyl-CoA dehydratase [Camellia oleifera] |
| JMSF026G10 | Sequence | 654 | 003973 (8) | emb|CDP01561.1| | 3e-110 | unnamed protein product [Coffea canephora] | 726 | 003973 (8) | gb|AIL29211.1| | 5e-113 | 3-hydroxyacyl-CoA dehydratase [Camellia oleifera] |
This contig is upended
. : . : . : . : . : . :
JMFF019P08- TCTTCCGTG
____________________________________________________________
consensus TCTTCCGTG
. : . : . : . : . : . :
JMFF019P08- CAGTTGATCGAAAGATGGAGTGACAGATGGCGAGTTGGTGATCCGTTCACCTACAAATTA
____________________________________________________________
consensus CAGTTGATCGAAAGATGGAGTGACAGATGGCGAGTTGGTGATCCGTTCACCTACAAATTA
. : . : . : . : . : . :
JMFF019P08- AATACTCCGATATTATTTAATTAGAAATTGCAAACACCCAATTCATATTTCTTCGTTTCT
JMFF005C17- ATATTTCTTCGTTTCT
JMFF012A04- ATTGCAAACACCCAATTCATATTTCTTCGTTTCT
JMSF026G10- GTTTCT
____________________________________________________________
consensus AATACTCCGATATTATTTAATTAGAAATTGCAAACACCCAATTCATATTTCTTCGTTTCT
. : . : . : . : . : . :
JMFF019P08- TCCGCTCATCTCAACTGAGCTGAGGTTTCAATTTCAAGCACGCCTTCTTCGATGGCGGGT
JMFF005C17- TCCGCTCATCTCAACTGAGCTGAGGTTTCAATTTCAAGCACGCCTTCTTCGATGGCGGGT
JMFF012A04- TCCGCTCATCTCAACTGAGCTGAGGTTTCAATTTCAAGCACGCCTTCTTCGATGGCGGGT
JMSF026G10- TCCGCTCATCTCAACTGAGCTGAGGTTTCAATTTCAAGCACGCCTTCTTCGATGGCGGGT
____________________________________________________________
consensus TCCGCTCATCTCAACTGAGCTGAGGTTTCAATTTCAAGCACGCCTTCTTCGATGGCGGGT
. : . : . : . : . : . :
JMFF019P08- GGAGTTTTTTCAGGCTTGAGGCGCTTCTACCTCGCCCTTTACAATTGGGTTGTGTTTGTA
JMFF005C17- GGAGTTTTTTCAGGCTTGAGGCGCTTCTACCTCGCCCTTTACAATTGGGTTGTGTTTGTA
JMFF012A04- GGAGTTTTTTCAGGCTTGAGGCGCTTCTACCTCGCCCTTTACAATTGGGTTGTGTTTGTA
JMSF026G10- GGAGTTTTTTCAGGCTTGAGGCGCTTCTACCTCGCCCTTTACAATTGGGTTGTGTTTGTA
rJMFF019P08+ TTTACAATTGGGTTGTGTTTGTA
rJMSF026G10+ TTCTACCTCGCCCTTTACAATTGGGTTGTGTTTGTA
rJMFF005C17+ TTACAATTGGGTTGTGTTTGTA
____________________________________________________________
consensus GGAGTTTTTTCAGGCTTGAGGCGCTTCTACCTCGCCCTTTACAATTGGGTTGTGTTTGTA
. : . : . : . : . : . :
JMFF019P08- GGATGGGTTCAGGTGTTTTATCTTGCTGTGAAGACTCTAATGGAGTCTGGGCACGAAAAT
JMFF005C17- GGATGGGTTCAGGTGTTTTATCTTGCTGTGAAGACTCTAATGGAGTCTGGGCACGAAAAT
JMFF012A04- GGATGGGTTCAGGTGTTTTATCTTGCTGTGAAGAATCTAATGGAGTCTGGGCACGAAAAT
JMSF026G10- GGATGGGTTCAGGTGTTTTATCTTGCTGTGAAGACTCTAATGGAGTCTGGGCACGAAAAT
rJMFF019P08+ GGATGGGTTCAGGTGTTTTATCTTGCTGTGAAGACTCTAATGGAGTCTGGGCACGAAAAT
rJMSF026G10+ GGATGGGTTCAGGTGTTTTATCTTGCTGTGAAGACTCTAATGGAGTCTGGGCACGAAAAT
rJMFF005C17+ GGATGGGTTCAGGTGTTTTATCTTGCTGTGAAGACTCTAATGGAGTCTGGGCACGAAAAT
rJMFF012A04+ GTCTGGGCACGAAAAT
____________________________________________________________
consensus GGATGGGTTCAGGTGTTTTATCTTGCTGTGAAGACTCTAATGGAGTCTGGGCACGAAAAT
. : . : . : . : . : . :
JMFF019P08- GTCTACCAAGCCGTCTAAAAGCCTCTGCTTTTAGCTCAATCCGCCGCCGTATTGGAGATA
JMFF005C17- GTCTACCAAGCCGTCGAAAAGCCTCTGCTTTTAGCTCAATCCGCCGCCGTATTGGAGATA
JMFF012A04- GTCTACCAAGCCGTCGAAAAGCCTCTGCTTTTAGCTCAATCCGCCGCCGTATTGGAGATA
JMSF026G10- GTCTACCAAGCCGTCGAAAAGCCTCTGCTTTTAGCTCAATCCGCCGCCGTATTGGAGATA
rJMFF019P08+ GTCTACCAAGCCGTCTAAAAGCCTCTGCTTTTAGCTCAATCCGCCGCCGTATTGGAGATA
rJMSF026G10+ GTCTACCAAGCCGTCGAAAAGCCTCTGCTTTTAGCTCAATCCGCCGCCGTATTGGAGATA
rJMFF005C17+ GTCTACCAAGCCGTCGAAAAGCCTCTGCTTTTAGCTCAATCCGCCGCCGTATTGGAGATA
rJMFF012A04+ GTCTACCAAGCCGTCGAAAAGCCTCTGCTTTTAGCTCAATCCGCCGCCGTATNGGAGATA
____________________________________________________________
consensus GTCTACCAAGCCGTCGAAAAGCCTCTGCTTTTAGCTCAATCCGCCGCCGTATTGGAGATA
. : . : . : . : . : . :
JMFF019P08- CTTCATGGTCTAGTAGGACTTGTGAGATCTCCTATTTCAGCAACACTGCCACAGATAGGA
JMFF005C17- CTTCATGGTCTAGTAGGACTTGTGAGATCTCCTATTTCAGCAACACTGCCACAGATAGGA
JMFF012A04- CTTCATGGTCTAGTAGGACTTGTGAGATCTCCTATTTCAGCAACACTGCCACAGATAGGA
JMSF026G10- CTTCATGGTCTAGTAGGACTTGTGAGATCTCCTATTTCAGCAACACTGCCACAGATAGGA
rJMFF019P08+ CTTCATGGTCTAGTAGGACTTGTGAGATCTCCTATTTCAGCAACACTGCCACAGATAGGA
rJMSF026G10+ CTTCATGGTCTAGTAGGACTTGTGAGATCTCCTATTTCAGCAACACTGCCACAGATAGGA
rJMFF005C17+ CTTCATGGTCTAGTAGGACTTGTGAGATCTCCTATTTCAGCAACACTGCCACAGATAGGA
rJMFF012A04+ CTTCATGGTNTAGTAGGACTNGTGAGATCTCCTATTTCAGCAACACTGCCACAGATAGGA
____________________________________________________________
consensus CTTCATGGTCTAGTAGGACTTGTGAGATCTCCTATTTCAGCAACACTGCCACAGATAGGA
. : . : . : . : . : . :
JMFF019P08- TCGAGATTATATGTTACTTGGGGGATTTTGTATAGCTTTCCTGAGATTCGGACCCATGTA
JMFF005C17- TCGAGATTATATGTTACTTGGGGGATTTTGTATAGCTTTCCTGAGATTCGGACCCATGTA
JMFF012A04- TCGAGATTATATGTTACTTGGGGGATTTTGTATAGCTTTCCTGAGATTCGGACCCATGTA
JMSF026G10- TCGAGATTATATGTTACTTGGGGGATTTTGTATAGCTTTCCTGAGATTCGGACCCATGTA
rJMFF019P08+ TCGAGATTATATGTTACTTGGGGGATTTTGTATAGCTTTCCTGAGATTCGGACCCATGTA
rJMSF026G10+ TCGAGATTATATGTTACTTGGGGGATTTTGTATAGCTTTCCTGAGATTCGGACCCATGTA
rJMFF005C17+ TCGAGATTATATGTTACTTGGGGGATTTTGTATAGCTTTCCTGAGATTCGGACCCATGTA
rJMFF012A04+ TCGAGATTATATGTTACTTGGGGGATTTTGTATAGCTTTCCTGAGATTCGGACCCATGTA
____________________________________________________________
consensus TCGAGATTATATGTTACTTGGGGGATTTTGTATAGCTTTCCTGAGATTCGGACCCATGTA
. : . : . : . : . : . :
JMFF019P08- TTTGTTAGTTCTCTAGTCATTAGTTGGTCTATCACAGAGATTATCCGGTATTCATTCTTT
JMFF005C17- TTTGTTAGTTCTCTAGTCATTAGTTGGTCTATCACAGAGATTATCCGGTATTCATTCTTT
JMFF012A04- TTTGTTAGTTCTCTAGTCATTAGTTGGTCTATCACAGAGATTATCCGGTATTCATTCTTT
JMSF026G10- TTTGTTAGTTCTCTAGTCATTAGTTGGTCTATCACAGAGATTATCCGGTATTCATTCTTT
rJMFF019P08+ TTTGTTAGTTCTCTAGTCATTAGTTGGTCTATCACAGAGATTATCCGGTATTCATTCTTT
rJMSF026G10+ TTTGTTAGTTCTCTAGTCATTAGTTGGTCTATCACAGAGATTATCCGGTATTCATTCTTT
rJMFF005C17+ TTTGTTAGTTCTCTAGTCATTAGTTGGTCTATCACAGAGATTATCCGGTATTCATTCTTT
rJMFF012A04+ TTTGTTAGTTCTCTAGTCATTAGTTGGTCTATCACAGAGATTATCCGGTATTCATTCTTT
____________________________________________________________
consensus TTTGTTAGTTCTCTAGTCATTAGTTGGTCTATCACAGAGATTATCCGGTATTCATTCTTT
. : . : . : . : . : . :
JMFF019P08- GGCACAAAGGAGGCATTTGGCCGTGG
JMFF005C17- GGCACAAAGGAGGCATTTGGCCGTGGACCTTCAGGGCTCTTGTGGCTTA
JMFF012A04- GGCACAAAGGAGGCATTTGGCCGTGGACCTTCAGGGCTCTTGTGGCTTANGTATAGCTCC
JMSF026G10- GGCACAAAGGAGGCATTTGGCCGTGGACCTTCAGGGCTCTTGTGGCTTAGGTATAGCTCC
rJMFF019P08+ GGCACAAAGGAGGCATTTGGCCGTGGACCTTCAGGGCTCTTGTGGCTTAGGTATAGCTCC
rJMSF026G10+ GGCACAAAGGAGGCATTTGGCCGTGGACCTTCAGGGCTCTTGTGGCTTAGGTATAGCTCC
rJMFF005C17+ GGCACAAAGGAGGCATTTGGCCGTGGACCTTCAGGGCTCTTGTGGCTTAGGTATAGCTCC
rJMFF012A04+ GGCACAAAGGAGGCATTTGGCCGTGGACCTTCAGGGCTCTTGTGGCTTAGGTATAGCTCC
____________________________________________________________
consensus GGCACAAAGGAGGCATTTGGCCGTGGACCTTCAGGGCTCTTGTGGCTTAGGTATAGCTCC
. : . : . : . : . : . :
JMFF012A04- TTCATCTTGCTATATCCTACCGGCATTACAAGTGAAGTTGGTTTAATATACNAGGCTCTT
JMSF026G10- TTCATCTTGCTATATCCTACCGGCATTACAAGTGAAGTTGGTTTAATATACAAGGCTCTT
rJMFF019P08+ TTCATCTTGCTATATCCTACCGGCATTACAAGTGAAGTTGGTTTAATATACAAGGCTCTT
rJMSF026G10+ TTCATCTTGCTATATCCTACCGGCATTACAAGTGAAGTTGGTTTAATATACAAGGCTCTT
rJMFF005C17+ TTCATCTTGCTATATCCTACCGGCATTACAAGTGAAGTTGGTTTAATATACAAGGCTCTT
rJMFF012A04+ TTCATCTTGCTATATCCTACCGGCATTACAAGTGAAGTTGGTTTAATATACAAGGCTCTT
____________________________________________________________
consensus TTCATCTTGCTATATCCTACCGGCATTACAAGTGAAGTTGGTTTAATATACAAGGCTCTT
. : . : . : . : . : . :
JMFF012A04- CCTTACCTCATG
JMSF026G10- CCTTACCTCATGGAATCGGGAAAGTATTCATTTTGGATGCCCAACAAATGGAACTTTTCT
rJMFF019P08+ CCTTACCTCATGGAATCGGGAAAGTATTCATTTTGGATGCCCAACAAATGGAACTTTTCT
rJMSF026G10+ CCTTACCTCATGGAATCGGGAAAGTATTCATTTTGGATGCCCAACAAATGGAACTTTTCT
rJMFF005C17+ CCTTACCTCATGGAATCGGGAAAGTATTCATTTTGGATGCCCAACAAATGGAACTTTTCT
rJMFF012A04+ CCTTACCTCATGGAATCGGGAAAGTATTCATTTTGGATGCCCAACAAATGGAACTTTTCT
____________________________________________________________
consensus CCTTACCTCATGGAATCGGGAAAGTATTCATTTTGGATGCCCAACAAATGGAACTTTTCT
. : . : . : . : . : . :
JMSF026G10- TTCGACTACTACTACATGGCATTTGTTGTGTTGGCCATCTATGTTCC
rJMFF019P08+ TTCGACTACTACTACATGGCATTTGTTGTGTTGGCCATCTATGTTCCAGGCAGCCCTCAC
rJMSF026G10+ TTCGACTACTACTACATGGCATTTGTTGTGTTGGCCATCTATGTTCCAGGCAGCCCTCAC
rJMFF005C17+ TTCGACTACTACTACATGGCATTTGTTGTGTTGGCCATCTATGTTCCAGGCAGCCCTCAC
rJMFF012A04+ TTCGACTACTACTACATGGCATTTGTTGTGTTGGCCATCTATGTTCCAGGCAGCCCTCAC
____________________________________________________________
consensus TTCGACTACTACTACATGGCATTTGTTGTGTTGGCCATCTATGTTCCAGGCAGCCCTCAC
. : . : . : . : . : . :
rJMFF019P08+ ATGTATGGCTACATGCTTGGACAAAGGAAGAAAGCTCTCCGCAAGGCCAAGCAGGCATAG
rJMSF026G10+ ATGTATGGCTACATGCTTGGACAAAGGAAGAAAGCTCTCCGCAAGGCCAAGCAGGCATAG
rJMFF005C17+ ATGTATGGCTACATGCTTGGACAAAGGAAGAAAGCTCTCCGCAAGGCCAAGCAGGCATAG
rJMFF012A04+ ATGTATGGCTACATGCTTGGACAAAGGAAGAAAGCTCTCCGCAAGGCCAAGCAGGCATAG
____________________________________________________________
consensus ATGTATGGCTACATGCTTGGACAAAGGAAGAAAGCTCTCCGCAAGGCCAAGCAGGCATAG
. : . : . : . : . : . :
rJMFF019P08+ ACCACTGGCTTTATAACTTATGTGTTTGTATTTGGAATTTTG
rJMSF026G10+ ACCACTGGCTTTATAACTTATGTGTTTGTATTTGGAATTTTGGATGGATTCTTGTTTTTT
rJMFF005C17+ ACCACTGGCTTTATAACTTATGTGTTTGTATTTGGAATTTTGGATGGATTCTTGTTTTTT
rJMFF012A04+ ACCACTGGCTTTATAACTTATGTGTTTGTATTTGGAATTTTGGATGGATTCTTGTTTTTT
____________________________________________________________
consensus ACCACTGGCTTTATAACTTATGTGTTTGTATTTGGAATTTTGGATGGATTCTTGTTTTTT
. : . : . : . : . : . :
rJMSF026G10+ TAAATCATTTCATCTTCATCTTTGGT
rJMFF005C17+ TAAATCATTTCATCTTCATCTTTGGTTGAACTATGC
rJMFF012A04+ TAAATCATTTCATCTTCATCTTTGGTTGAACTATGCNGAAAACAATGGTAGATTTCTCTC
____________________________________________________________
consensus TAAATCATTTCATCTTCATCTTTGGTTGAACTATGCNGAAAACAATGGTAGATTTCTCTC