Contig 003964:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF035B24+                                            TGAGCGTATTAAGAGCTGTAAAGGAA
rJMFF024H23+                                            TGAGCGTATTAAGAGCTGTAAAGGAA
rJMFF010C16+                             TNTTCCCGTTGAATNTGAGCGTATTAAGAGCTGTAAAGGAA
                      ____________________________________________________________
consensus                                TNTTCCCGTTGAATNTGAGCGTATTAAGAGCTGTAAAGGAA
 
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rJMFF035B24+          GAGTAATGGCGACGGCAGAAGAACCAAATGTGTTTAGAGTGTGGATGCCTGAACAAGATT
rJMFF024H23+          GAGTAATGGCGACGGCAGAAGAACCAAATGTGTTTAGAGTGTGGATGCCTGAACAAGATT
rJMFF010C16+          GAGTAATGGCGACGGCAGAAGAACCAAATGTGTTTAGAGTGTGGATGCCTGAACAAGATT
                      ____________________________________________________________
consensus             GAGTAATGGCGACGGCAGAAGAACCAAATGTGTTTAGAGTGTGGATGCCTGAACAAGATT
 
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rJMFF035B24+          GCCCTGGGCTCGCCATGGCCAGAGCTTTCGGAGATTTCTGCTTGAAGGACTACGGCGTCA
rJMFF024H23+          GCCCTGGGCTCGCCATGGCCAGAGCTTTCGGAGATTTCTGCTTGAAGGACTACGGCGTCA
rJMFF010C16+          GCCCTGGGCTCGCCATGNCCAGAGCTTTCGGAGATTTCTGCTTGAAGGACTACGGCGTCA
                      ____________________________________________________________
consensus             GCCCTGGGCTCGCCATGGCCAGAGCTTTCGGAGATTTCTGCTTGAAGGACTACGGCGTCA
 
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rJMFF035B24+          TCTCCGTCCCTGAGATTTTCTACAGAAAGATTTCCGAGAGAGATGAATTTGTTGTTCTAG
rJMFF024H23+          TCTCCGTCCCTGAGATTTTCTACAGAAAGATTTCCGAGAGAGATGAATTTGTTGTTCTAG
rJMFF010C16+          TCTCCGTCCCTGAGATTTTCTACAGAAAGATTTCCGAGAGAGATGAATTTGTTGTTCTAG
                      ____________________________________________________________
consensus             TCTCCGTCCCTGAGATTTTCTACAGAAAGATTTCCGAGAGAGATGAATTTGTTGTTCTAG
 
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rJMFF035B24+          CTTCTGATGGTGTTTGGGATGTTCTGAGCAACTATGAGGTGATCAAGACGGTTGCGACGG
rJMFF024H23+          CTTCTGATGGTGTTTGGGATGTTCTGAGCAACTATGAGGTGATCAAGACGGTTGCGACGG
rJMFF010C16+          CTTCTGATGGTGTTTGGGATGTTCTGAGCAACTATGAGGTGATCAAGACGGTTGCGACGG
                      ____________________________________________________________
consensus             CTTCTGATGGTGTTTGGGATGTTCTGAGCAACTATGAGGTGATCAAGACGGTTGCGACGG
 
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rJMFF035B24+          CGAAGAAGAGATCCATGGCGGCGCGTCTGGTGGTGGAGAGGGCGGTCCGGACATGGAAAC
rJMFF024H23+          CGAAGAAGAGATCCATGGCGGCGCGTCTGGTGGTGGAGAGGGCGGTCCGGACATGGAAAC
rJMFF010C16+          CGAAGAAGAGATCCATGGCGGCGCGTCTGGTGGTGGAGAGGGCGGTCCGGACATGGAAAC
                      ____________________________________________________________
consensus             CGAAGAAGAGATCCATGGCGGCGCGTCTGGTGGTGGAGAGGGCGGTCCGGACATGGAAAC
 
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rJMFF035B24+          AGAAGTACCCGTGTTCAAAGACCGATGATTGTGCGGTGGTGTGTCTGTTCTTCAAACGCC
rJMFF024H23+          AGAAGTACCCGTGTTCAAAGACCGATGATTGTGCGGTGGTGTGTCTGTTCTTCAAACGCC
rJMFF010C16+          AGAAGTACCCGTGTTCAAAGACCGATGATTGTGCGGTGGTGTGTCTGTTCTTCAAACGCC
                      ____________________________________________________________
consensus             AGAAGTACCCGTGTTCAAAGACCGATGATTGTGCGGTGGTGTGTCTGTTCTTCAAACGCC
 
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rJMFF035B24+          CCAAACCAATGCTATTGAAAACTATGTCCCAAGCGGCGGGGCTTAACATGAGCTTCCCGG
rJMFF024H23+          CCAAACCAATGCTATTGAAAACTATGTCCCAAGCGGCGGGGCTTAACATGAGCTTCCCGG
rJMFF010C16+          CCAAACCAATGCTATTGAAAACTATGTCCCAAGCGGCGGGGCTTAACATGAGCTTCCCGG
                      ____________________________________________________________
consensus             CCAAACCAATGCTATTGAAAACTATGTCCCAAGCGGCGGGGCTTAACATGAGCTTCCCGG
 
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rJMFF035B24+          AGACCGGCCGCAACGAGGAGAACTCCGCCATCATCGCCGAGACCGACGACGGCCTTGACA
rJMFF024H23+          AGACCGGCCGCAACGAGGAGAACTCCGCCATCATCGCCGAGACCGACGACGGCCTTGACA
rJMFF010C16+          AGACCGGCCGCAACGAGGAGAACTCCGCCATCATCGCCGAGACCGACGACGGCCTTGACA
                      ____________________________________________________________
consensus             AGACCGGCCGCAACGAGGAGAACTCCGCCATCATCGCCGAGACCGACGACGGCCTTGACA
 
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rJMFF035B24+          CGCTCCTCAATTTCAAGGGTACTGAAGAGGGAGAGGACGGCGATGGAGGAGACCTGCCGG
rJMFF024H23+          CGCTCCTCAATTTCAAGGGTACTGAAGAGGGAGAGGACGGCGATGGAGGAGACCTGCCGG
rJMFF010C16+          CGCTCCTCAATTTCAAGGGTACTGAAGAGGGAGAGGACGGCGATGGAGGAGACCTGCCGG
                      ____________________________________________________________
consensus             CGCTCCTCAATTTCAAGGGTACTGAAGAGGGAGAGGACGGCGATGGAGGAGACCTGCCGG
 
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rJMFF035B24+          AACGCCACCGCCGCAGAGCCCGGGTTCGTCCAATACCCAGCTGAGCTAAAATTTTGAGTA
rJMFF024H23+          AACGCCACCGCCGCAGAGCCCGGGTTCGTCCAATACCCAGCTGAGCTAAAATTTTGAGTA
rJMFF010C16+          AACGCCACCGCCGCAGAGCCCGGGTTCGTCCAATACCCAGCTGAGCTAAAATTTTGAGTA
                      ____________________________________________________________
consensus             AACGCCACCGCCGCAGAGCCCGGGTTCGTCCAATACCCAGCTGAGCTAAAATTTTGAGTA
 
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rJMFF035B24+          TGTAGAGGCTATAAATTTATCTGTAAATCTTTAAATCTACATTTTTGTTCAAAGAAAT  
rJMFF024H23+          TGTAGAGGCTATAAATTTATCTGTAAATCTTTAAATCTACATTTTTGTTCAAAGAAATGT
rJMFF010C16+          TGTAGAGGCTATAAATTTATCTGTAAATCTTTAAATCTACATTTTTGTTCAAAGAAATGT
                      ____________________________________________________________
consensus             TGTAGAGGCTATAAATTTATCTGTAAATCTTTAAATCTACATTTTTGTTCAAAGAAATGT
 
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rJMFF024H23+          AAATGAATTGAGCAAATTAAACTAAAATCTGAATGTAGTACATGCATACATGTATCAAGA
rJMFF010C16+          AAATGAATTGAGCAAATTAAACTAAAATCTGAATGTAGTACATGCATACATGTATCAAGA
                      ____________________________________________________________
consensus             AAATGAATTGAGCAAATTAAACTAAAATCTGAATGTAGTACATGCATACATGTATCAAGA
 
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rJMFF024H23+          ACGCCATGCAAGAT                                              
rJMFF010C16+          ACGCCATGCAAGATTTCCAGAACGAACTGAATGAAAGATTATTATATTACAACTTCATAG
                      ____________________________________________________________
consensus             ACGCCATGCAAGATTTCCAGAACGAACTGAATGAAAGATTATTATATTACAACTTCATAG