clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF008O03 | Sequence | 623 | 005945 (4) | ref|XP_009778271.1| | 3e-25 | PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris] | 708 | 003958 (6) | ref|XP_009629097.1| | 5e-59 | PREDICTED: autophagy-related protein 18a [Nicotiana tomentosiformis] |
JMFF017G08 | Sequence | 539 | 005945 (4) | emb|CAN67661.1| | 4e-18 | hypothetical protein VITISV_044410 [Vitis vinifera] | 754 | 003958 (6) | ref|XP_009778271.1| | 4e-116 | PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris] |
JMFF026J17 | Sequence | 548 | 005945 (4) | ref|XP_006344646.1| | 7e-24 | PREDICTED: autophagy-related protein 18a-like [Solanum tuberosum] | 766 | 003958 (6) | ref|XP_009778271.1| | 2e-150 | PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris] |
JMSF023G11 | Sequence | 627 | 003958 (6) | ref|XP_009778271.1| | 2e-49 | PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris] | 724 | 008536 (3) | ref|XP_009778271.1| | 5e-86 | PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris] |
JMSF024G11 | Sequence | 141 | 003958 (6) | 357 | 008536 (3) | ref|XP_009629097.1| | 3e-53 | PREDICTED: autophagy-related protein 18a [Nicotiana tomentosiformis] | |||
JMSF042M08 | Sequence | 702 | 003958 (6) | ref|XP_009778271.1| | 2e-56 | PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris] | 736 | 008536 (3) | ref|XP_009778271.1| | 5e-86 | PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF024G11- GGTTGCCACTTGCCAGTTGNCACCGNCGCCACGNAATTC
JMSF023G11- GGTTGCCACTTGCCAGTTGCCACCGCCGCCACGCAATTC
JMSF042M08- GGTTGCCACTTGCCAGTTGCCACCGCCGCCACGCAATTC
____________________________________________________________
consensus GGTTGCCACTTGCCAGTTGCCACCGCCGCCACGCAATTC
. : . : . : . : . : . :
JMSF024G11- CTCCATCGCCACCCCCATGANCTCTACTCTTCCTTCTTCTTCCCCCTGGCCTCCCCTTAA
JMSF023G11- CTCCATCGCCACCCCCATGACCTCTACTCTTCCTTCTTCTTCCCCCTGGCCTCCCCTTAA
JMSF042M08- CTCCATCGCCACCCCCATGACCTCTACTCTTCCTTCTTCTTCCCCCTGGCCTCCCCTTAA
____________________________________________________________
consensus CTCCATCGCCACCCCCATGACCTCTACTCTTCCTTCTTCTTCCCCCTGGCCTCCCCTTAA
. : . : . : . : . : . :
JMSF024G11- NCCTACATCTCCCCCATTCATGGNTGACAATTCTGCTC
JMSF023G11- CCCTACATCTCCCCCATTCATGGCTGACAATTCTGCTCCCGACGCCGACGACCGCTCCCC
JMSF042M08- CCCTACATCTCCCCCATTCATGGCTGACAATTCTGCTCCCGACGCCGACGACCGCTCCCC
____________________________________________________________
consensus CCCTACATCTCCCCCATTCATGGCTGACAATTCTGCTCCCGACGCCGACGACCGCTCCCC
. : . : . : . : . : . :
JMSF023G11- GCTCTCCGACCTCTCCGATATCTCATCCGCCGTCACGTCCGCAGCCGCCGCCGCCGCCGC
JMSF042M08- GCTCTCCGACCTCTCCGATATCTCATCCGCCGTCACGTCCGCAGCCGCCGCCGCCGCCGC
____________________________________________________________
consensus GCTCTCCGACCTCTCCGATATCTCATCCGCCGTCACGTCCGCAGCCGCCGCCGCCGCCGC
. : . : . : . : . : . :
JMSF023G11- CGCCGACGACGACCGGCGCTCCCAAACCTCACCACCGCTCACCACCGCAACTACACATAA
JMSF042M08- CGCCGACGACGACCGGCGCTCCCAAACCTCACCACCGCTCACCACCGCAACTACACATAA
____________________________________________________________
consensus CGCCGACGACGACCGGCGCTCCCAAACCTCACCACCGCTCACCACCGCAACTACACATAA
. : . : . : . : . : . :
JMSF023G11- TTCTAACCCTAACCCTGTTTCTCCACCCGTTGATTCCTTTCCCCCTTCCCTCCTCCACCT
JMSF042M08- TTCTAACCCTAACCCTGTTTCTCCACCCGTTGATTCCTTTCCCCCTTCCCTCCTCCACCT
____________________________________________________________
consensus TTCTAACCCTAACCCTGTTTCTCCACCCGTTGATTCCTTTCCCCCTTCCCTCCTCCACCT
. : . : . : . : . : . :
JMSF023G11- CTCCTTTAACCAGGACCACGGCTGCTTTGCTCTCGGGATCAATCGCGGCTTCCGAATCTA
JMSF042M08- CTCCTTTAACCAGGACCACGGCTGCTTTGCTCTCGGGATCAATCGCGGCTTCCGAATCTA
____________________________________________________________
consensus CTCCTTTAACCAGGACCACGGCTGCTTTGCTCTCGGGATCAATCGCGGCTTCCGAATCTA
. : . : . : . : . : . :
JMSF023G11- TAACTGCGATCCTTTCCGAGAGATTTTCCGCCGCGACTTCTCTAATACTGGCGGAGGCGG
JMSF042M08- TAACTGCGATCCTTTCCGAGAGATTTTCCGCCGCGACTTCTCTAATACTGGCGGAGGCGG
____________________________________________________________
consensus TAACTGCGATCCTTTCCGAGAGATTTTCCGCCGCGACTTCTCTAATACTGGCGGAGGCGG
. : . : . : . : . : . :
JMSF023G11- TGGAATTGGGGTAGTTCAGATGCTCTTCCGATGTAATATCCTAGCCCTAGTCGGTGGAGG
JMSF042M08- TGGAATTGGGGTAGTTCAGATGCTCTTCCGATGTAATATCCTAGCCCTAGTCGGTGGAGG
rJMFF026J17+ GGAGG
____________________________________________________________
consensus TGGAATTGGGGTAGTTCAGATGCTCTTCCGATGTAATATCCTAGCCCTAGTCGGTGGAGG
. : . : . : . : . : . :
JMSF023G11- TCCGGAGCCGCAGTATCCTATGAACAAAGTAATGATCTGGGACGATCACCAGTCCAGGTG
JMSF042M08- TCCGGAGCCGCAGTATCCTATGAACAAAGTAATGATCTGGGACGATCACCAGTCCAGGTG
rJMFF026J17+ GCCGGAACCACAGTATCCTTTGAATAAGGTCATGATCTGGGACGATCATCAGTCCAGGTG
____________________________________________________________
consensus TCCGGAGCCGCAGTATCCTATGAACAAAGTAATGATCTGGGACGATCACCAGTCCAGGTG
. : . : . : . : . : . :
JMSF023G11- CATCGGCGAGCTATCATTCCGGTCGGAGGTGAAGTCGGTCCGGC
JMSF042M08- CATCGGCGAGCTATCATTCCGGTCGGAGGTGAAGTCGGTCCGGCTCCGGAGGGACCGGAT
rJMFF026J17+ CATCGGAGAGCTATCCTTTCGCTCCGAGGTGAAGTCCGTCCGGCATCGGAGGGATAGAAT
____________________________________________________________
consensus CATCGGCGAGCTATCATTCCGGTCGGAGGTGAAGTCGGTCCGGCTTCGGAGGGATCGGAT
. : . : . : . : . : . :
JMSF042M08- TGTGGTCGTTCTGGCGCANAAGATATTCGTATACAATTTCGCGGATTTGAAGCTGTT
rJMFF026J17+ TGTGGTTGTTTTGGCGCAGAAGATATTTGTGTACAATTTCGCAGATTTGAAGTTGTTACA
____________________________________________________________
consensus TGTGGTTGTTTTGGCGCAGAAGATATTTGTGTACAATTTCGCGGATTTGAAGTTGTTACA
. : . : . : . : . : . :
rJMFF026J17+ CCAGATAGAGACTATGGTGAACCCGAAAGGATTGTGTGAGGTCTCGCAGGTGTCAGGGTC
____________________________________________________________
consensus CCAGATAGAGACTATGGTGAACCCGAAAGGATTGTGTGAGGTCTCGCAGGTGTCAGGGTC
. : . : . : . : . : . :
rJMFF026J17+ TATGGTGCTGGTTTGTCCGGGGCTGCAAAAGGGCCAGGTCAGGGTTGAACACTATGGCTC
rJMFF017G08+ GTCCGGGGCTGCAAAAGGGCCAGGTCAGGGTTGAACACTATGGCTC
____________________________________________________________
consensus TATGGTGCTGGTTTGTCCGGGGCTGCAAAAGGGCCAGGTCAGGGTTGAACACTATGGCTC
. : . : . : . : . : . :
rJMFF026J17+ AAAGAGGACAAAATTTATAGCGGCTCACGATTCGAGGGTATCATCTTTTGCTCTAACAAA
rJMFF017G08+ AAAGAGGACAAAATTTATAGCGGCTCACGATTCGAGGGTATCATCTTTTGCTCTAACAAA
____________________________________________________________
consensus AAAGAGGACAAAATTTATAGCGGCTCACGATTCGAGGGTATCATCTTTTGCTCTAACAAA
. : . : . : . : . : . :
rJMFF026J17+ CGATGGGAAATTGCTTGCTACAGCAAGTAGTAAAGGGACTCTTGTGAGGGTGTTCAATAC
rJMFF017G08+ CGATGGGAAATTGCTTGCTACAGCAAGTAGTAAAGGGACTCTTGTGAGGGTGTTCAATAC
____________________________________________________________
consensus CGATGGGAAATTGCTTGCTACAGCAAGTAGTAAAGGGACTCTTGTGAGGGTGTTCAATAC
. : . : . : . : . : . :
rJMFF026J17+ TTTAGATGGATCATTGCTTCAAGAGCTTAGGAGAGGTGCAGACAGAGCTGAGATTTACAG
rJMFF017G08+ TTTAGATGGATCATTGCTTCAAGAGCTTAGGAGAGGTGCAGACAGAGCTGAGATTTACAG
____________________________________________________________
consensus TTTAGATGGATCATTGCTTCAAGAGCTTAGGAGAGGTGCAGACAGAGCTGAGATTTACAG
. : . : . : . : . : . :
rJMFF026J17+ CCTTGCTTTTTCTTCCACTGCCCAATGGCTAGCTGTCTCAAGTGATAAAGGAACTGTACA
rJMFF017G08+ CCTTGCTTTTTCTTCCACTGCCCAATGGCTAGCTGTCTCAAGTGATAAAGGAACTGTACA
rJMFF008O03+ TTCCACTGCCCAATGGCTAGCTGTCTCAAGTGATAAAGGAACTGTACA
____________________________________________________________
consensus CCTTGCTTTTTCTTCCACTGCCCAATGGCTAGCTGTCTCAAGTGATAAAGGAACTGTACA
. : . : . : . : . : . :
rJMFF026J17+ TGTTTTCAACCTAAAGGTTGAATCAGGATCTCTAGGGGTTGAGAGATCTCGTGATCCAAC
rJMFF017G08+ TGTTTTCAACCTAAAGGTTGAATCAGGATCTCTAGGGGTTGAGAGATCTCGTGATCCAAC
rJMFF008O03+ TGTTTTCAACNTAAAGGTTGAATCAGGATCTCTAGGGGTTGAGAGATCTCGTGATCCAAC
____________________________________________________________
consensus TGTTTTCAACCTAAAGGTTGAATCAGGATCTCTAGGGGTTGAGAGATCTCGTGATCCAAC
. : . : . : . : . : . :
rJMFF026J17+ TGATACAAGTTCAACAACTCCATCAACTGTTTCACATCTCTCCTTCATTAAAGGTGTGCT
rJMFF017G08+ TGATACAAGTTCAACAACTCCATCAACTGTTTCACATCTCTCCTTCATTAAAGGTGTGCT
rJMFF008O03+ TGATACAAGTTCAACAACTCCATCAACTGTTTCACATCTCTCCTTCATTAAAGGTGTGCT
____________________________________________________________
consensus TGATACAAGTTCAACAACTCCATCAACTGTTTCACATCTCTCCTTCATTAAAGGTGTGCT
. : . : . : . : . : . :
rJMFF026J17+ GCCAAAATATTTCAGCTCTGAGTGGTCTGTGGCCCA
rJMFF017G08+ GCCAAAATATTTCAGCTCTGAGTGGTCTGTGGCCCAATTTCGTTTGCAAGAAGGTTTACA
rJMFF008O03+ GCCAAAATATTTCAGCTCTGAGTGGTCTGTGGCCCAATTTCGTTTGCAAGAAGGTTTACA
____________________________________________________________
consensus GCCAAAATATTTCAGCTCTGAGTGGTCTGTGGCCCAATTTCGTTTGCAAGAAGGTTTACA
. : . : . : . : . : . :
rJMFF017G08+ GCACATTGTTGCCTTTGGACACCAAAAAAATACAGTTCTTATACTTGGCATGGATGGCAG
rJMFF008O03+ GCACATTGTTGCCTTTGGACACCAAAAAAATACAGTTCTTATACTTGGCATGGATGGCAG
____________________________________________________________
consensus GCACATTGTTGCCTTTGGACACCAAAAAAATACAGTTCTTATACTTGGCATGGATGGCAG
. : . : . : . : . : . :
rJMFF017G08+ TTTCTACCGATGCCAGTTCGATCCAGCAGCCGGTGGGGAGATGACCCTCCTTGAACATCA
rJMFF008O03+ TTTCTACCGATGCCAGTTCGATCCAGCAGCCGGTGGGGAGATGACCCTCCTTGAACATCA
____________________________________________________________
consensus TTTCTACCGATGCCAGTTCGATCCAGCAGCCGGTGGGGAGATGACCCTCCTTGAACATCA
. : . : . : . : . : . :
rJMFF008O03+ AGATTTCTTGCAACCTGAGGAGAGCTTCTGATCACGAGATTGGAACATAAATATTAGCCA
____________________________________________________________
consensus AGATTTCTTGCAACCTGAGGAGAGCTTCTGATCACGAGATTGGAACATAAATATTAGCCA
. : . : . : . : . : . :
rJMFF008O03+ ACAATTTCTACTATTATGACCTGGCTCTGAGATTATATTAATTTATTTACCTTGTGAACG
____________________________________________________________
consensus ACAATTTCTACTATTATGACCTGGCTCTGAGATTATATTAATTTATTTACCTTGTGAACG
. : . : . : . : . : . :
rJMFF008O03+ AACATGAACTGTAAATATACAAGTGGTGACATTTGGGTCAGTTTTATCTTAAGATTGGGG
____________________________________________________________
consensus AACATGAACTGTAAATATACAAGTGGTGACATTTGGGTCAGTTTTATCTTAAGATTGGGG
. : . : . : . : . : . :
rJMFF008O03+ CTGTATATAAATTATCTTTCTGCAATTAGCCTAATTGCTATAAATGTCTTTGGCAATGCT
____________________________________________________________
consensus CTGTATATAAATTATCTTTCTGCAATTAGCCTAATTGCTATAAATGTCTTTGGCAATGCT
. : . : . : . : . : . :
rJMFF008O03+ CTTGAATCAATTTGCTTTCTGTAGCCACTATAATGAGGTTATTCCACTTTTGATTTCTTG
____________________________________________________________
consensus CTTGAATCAATTTGCTTTCTGTAGCCACTATAATGAGGTTATTCCACTTTTGATTTCTTG
. : . : . : . : . : . :
rJMFF008O03+ ATTATAGTGGTATTGGAGTATGTGAAGTTTGGTAAATTTTCATGGGCTGTTGGAAAAGTC
____________________________________________________________
consensus ATTATAGTGGTATTGGAGTATGTGAAGTTTGGTAAATTTTCATGGGCTGTTGGAAAAGTC