Contig 003954:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007P18Sequence565009293 (2)ref|XP_009775022.1|6e-85PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Nicotian714003954 (2)ref|XP_009775024.1|4e-75PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Nicotian
JMSF020D06Sequence590009293 (2)ref|XP_009775022.1|2e-86PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Nicotian789003954 (2)ref|XP_009775024.1|3e-93PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Nicotian

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020D06+ ANTAAAACGGGATTGNGTCGGTATTATGGCT
                      ____________________________________________________________
consensus ANTAAAACGGGATTGNGTCGGTATTATGGCT
 
. : . : . : . : . : . :
rJMSF020D06+ GCCTTCAAACTCAACGATCCTTCTNGTCATCACATTATTGTTGCAAATACCCATATTTAC
                      ____________________________________________________________
consensus GCCTTCAAACTCAACGATCCTTCTNGTCATCACATTATTGTTGCAAATACCCATATTTAC
 
. : . : . : . : . : . :
rJMSF020D06+ TGGGATCCCGAATGGATAGATGTCAAACTGGCACAAGCCAAATATTTGCTACGTCGCTTA
rJMFF007P18+ CCCGAATGGATAGATGTCAAACTGGCACAAGCCAAATATTTGCTACGTCGCTTA
                      ____________________________________________________________
consensus TGGGATCCCGAATGGATAGATGTCAAACTGGCACAAGCCAAATATTTGCTACGTCGCTTA
 
. : . : . : . : . : . :
rJMSF020D06+ GCTGAATTCAAGTCAAGAGTGTCGGACCAATTTGGCTGCTCGCCTTCTGTATTAGTAGCA
rJMFF007P18+ GCTGAATTCAAGTCAAGAGTGTCGGACCAATTTGGCTGCTCGCCTTCTGTATTAGTAGCA
                      ____________________________________________________________
consensus GCTGAATTCAAGTCAAGAGTGTCGGACCAATTTGGCTGCTCGCCTTCTGTATTAGTAGCA
 
. : . : . : . : . : . :
rJMSF020D06+ GGTGACTTCAATTCAGTCCCCGGGGATCAAGTATACCAATACATTGTTTCTGGTACCTCT
rJMFF007P18+ GGTGACTTCAATTCAGTCCCCGGGGATCAAGTATACCAATACATTGTTTCTGGTACCTCT
                      ____________________________________________________________
consensus GGTGACTTCAATTCAGTCCCCGGGGATCAAGTATACCAATACATTGTTTCTGGTACCTCT
 
. : . : . : . : . : . :
rJMSF020D06+ CCGCTCGGTCCTCAGCCAGAAATCTCAGATGAGATGCCTATTCCGGTATGCAGTGTATAT
rJMFF007P18+ CCGCTCGGTCCTCAGCCAGAAATCTCAGATGAGATGCCTATTCCGGTATGCAGTGTATAT
                      ____________________________________________________________
consensus CCGCTCGGTCCTCAGCCAGAAATCTCAGATGAGATGCCTATTCCGGTATGCAGTGTATAT
 
. : . : . : . : . : . :
rJMSF020D06+ GCATACACTAAAGGGGAGCCTCCGTTCACCAACTGCACCCCCGGTTTTACAGGAACTCTG
rJMFF007P18+ GCATACACTAAAGGGGAGCCTCCGTTCACCAACTGCACCCCCGGTTTTACAGGAACTCTG
                      ____________________________________________________________
consensus GCATACACTAAAGGGGAGCCTCCGTTCACCAACTGCACCCCCGGTTTTACAGGAACTCTG
 
. : . : . : . : . : . :
rJMSF020D06+ GATTACGTTTTGTTTTCACCTTCTGGAGATATAAAACCAGTTAGCTGCCTCGAACTTCCG
rJMFF007P18+ GATTACGTTTTGTTTTCACCTTCTGGAGATATAAAACCAGTTAGCTGCCTCGAACTTCCG
                      ____________________________________________________________
consensus GATTACGTTTTGTTTTCACCTTCTGGAGATATAAAACCAGTTAGCTGCCTCGAACTTCCG
 
. : . : . : . : . : . :
rJMSF020D06+ GGACCAGAATCATCCGATGTACAAGGTTGGTTGCCCAATTACTACCACCCAAGTGACCAT
rJMFF007P18+ GGACCAGAATCATCCGATGTACAAGGTTGGTTGCCCAATTACTACCACCCAAGTGACCAT
                      ____________________________________________________________
consensus GGACCAGAATCATCCGATGTACAAGGTTGGTTGCCCAATTACTACCACCCAAGTGACCAT
 
. : . : . : . : . : . :
rJMSF020D06+ CTCCCAATTGGCGCCGAATTTGAAGTCGATCCATAAGCGAATTTCCATATATGGTTAGCT
rJMFF007P18+ CTCCCAATTGGCGCCGAATTTGAAGTCGATCCATAAGCGAATTTCCATATATGGTTAGCT
                      ____________________________________________________________
consensus CTCCCAATTGGCGCCGAATTTGAAGTCGATCCATAAGCGAATTTCCATATATGGTTAGCT
 
. : . : . : . : . : . :
rJMSF020D06+ TCTCCTTCTTCCCTCCATACTAAGGGCTCACAATTCTTCTCTTAAATGATTTTTTTCACC
rJMFF007P18+ TCTCCTTCTTCCCTCCATACTAAGGGCTCACAATTCTTCTCTTAAATGATTTTTTTCACC
                      ____________________________________________________________
consensus TCTCCTTCTTCCCTCCATACTAAGGGCTCACAATTCTTCTCTTAAATGATTTTTTTCACC
 
. : . : . : . : . : . :
rJMSF020D06+ TCCGCGCGCGTCAACTGAAAGATATGTTCTGTTTCAACTTTCAACTAAAAGCTTAAGCTG
rJMFF007P18+ TCCGCGCGCGTCAACTGAAAGATATGTTCTGTTTCAACTTTCAACTAAAAGCTTAAGCTG
                      ____________________________________________________________
consensus TCCGCGCGCGTCAACTGAAAGATATGTTCTGTTTCAACTTTCAACTAAAAGCTTAAGCTG
 
. : . : . : . : . : . :
rJMSF020D06+ ATAGTGAGATTATACATTTATATTTCTATATACTGTATGCTCAACGTCGTCTTTCCCTGT
rJMFF007P18+ ATAGTGAGATTATACATTTATATTTCTATATACTGTATGCTCAACGTCGTCTTTCCCTGT
                      ____________________________________________________________
consensus ATAGTGAGATTATACATTTATATTTCTATATACTGTATGCTCAACGTCGTCTTTCCCTGT
 
. : . : . : . : . : . :
rJMSF020D06+ GTTTTGTTGCATTTCATGGTTTTCAAAACATTGCTGCA
rJMFF007P18+ GTTTTGTTGTATTTCATGGTTTTCAAAACATTGCTGCAACTGTATTTTCGAAAAAACTGA
                      ____________________________________________________________
consensus GTTTTGTTGTATTTCATGGTTTTCAAAACATTGCTGCAACTGTATTTTCGAAAAAACTGA