clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF007D17 | Sequence | 607 | 003952 (2) | ref|XP_007047234.1| | 1e-38 | Calcium-binding EF-hand family protein, putative [Theobroma cacao] gb|EOX91391.1 | 713 | 003952 (2) | ref|XP_007047234.1| | 2e-45 | Calcium-binding EF-hand family protein, putative [Theobroma cacao] gb|EOX91391.1 |
This contig is upended
. : . : . : . : . : . :
JMFF007D17- ATCGGCAT
____________________________________________________________
consensus ATCGGCAT
. : . : . : . : . : . :
JMFF007D17- TACAGTAAGGGAGAGAGAAATTAAAGAGAGAGAGAGTATCTTGATATAATAATGTCGGGT
____________________________________________________________
consensus TACAGTAAGGGAGAGAGAAATTAAAGAGAGAGAGAGTATCTTGATATAATAATGTCGGGT
. : . : . : . : . : . :
JMFF007D17- TTCCTCAACTTCCGCGGTAGTTTCTCAAGAAAGTCGTCTTCGCCGGCGGCGGCGGCGGTT
rJMFF007D17+ ACTTCCGCGGTAGTTTCTCAAGAAAGTCGTNTTCGCCGGCGGCGGCGGCGGTT
____________________________________________________________
consensus TTCCTCAACTTCCGCGGTAGTTTCTCAAGAAAGTCGTCTTCGCCGGCGGCGGCGGCGGTT
. : . : . : . : . : . :
JMFF007D17- AAGGAAAGGCCGAAAAAGACGGCGACATCCACGCAGGTTTTCCAACCAAACATGGACGAC
rJMFF007D17+ AAGGAAAGGCCGAAAAAGACGGCGACATCCACGCAGGTTTTCCAACCAAACATGGACGAC
____________________________________________________________
consensus AAGGAAAGGCCGAAAAAGACGGCGACATCCACGCAGGTTTTCCAACCAAACATGGACGAC
. : . : . : . : . : . :
JMFF007D17- ATGAGAAAGGTGTTCAGCAGGTACGACACCAACGGGGACGGGAGAATCTCTATGGAGGAG
rJMFF007D17+ ATGAGAAAGGTGTTCAGCAGGTACGACACCAACGGGGACGGGAGAATCTCTATGGAGGAG
____________________________________________________________
consensus ATGAGAAAGGTGTTCAGCAGGTACGACACCAACGGGGACGGGAGAATCTCTATGGAGGAG
. : . : . : . : . : . :
JMFF007D17- TTCAAGCTGGCGATGCAGGTGATCGGCGGCGGCGGCACGGAGGCGGCCGGGGCGTTCGAG
rJMFF007D17+ TTCAAGCTGGCGATGCAGGTGATCGGCGGCGGCGGCACGGAGGCGGCCGGGGCGTTCGAG
____________________________________________________________
consensus TTCAAGCTGGCGATGCAGGTGATCGGCGGCGGCGGCACGGAGGCGGCCGGGGCGTTCGAG
. : . : . : . : . : . :
JMFF007D17- GCGGCGGACTCCGACGGAGACGGCTACATAGACTTCCAGGAGTTCATCGCCGTCCACAAC
rJMFF007D17+ GCGGCGGACTCCGACGGAGACGGCTACATAGACTTCCAGGAGTTCATCGCCGTCCACAAC
____________________________________________________________
consensus GCGGCGGACTCCGACGGAGACGGCTACATAGACTTCCAGGAGTTCATCGCCGTCCACAAC
. : . : . : . : . : . :
JMFF007D17- CTGGGAGGGGGGATCAGCAAAGCTGACATCAAGAACGCATTCACGGTGTTCGACTTGGAC
rJMFF007D17+ CTGGGAGGGGGGATCAGCAAAGCTGACATCAAGAACGCATTCACGGTGTTCGACTTGGAC
____________________________________________________________
consensus CTGGGAGGGGGGATCAGCAAAGCTGACATCAAGAACGCATTCACGGTGTTCGACTTGGAC
. : . : . : . : . : . :
JMFF007D17- GGGAACGGAAAAATCAGCGCCGAGGAACTGTTGCAGGTGCTGCGGAGGATGGGAGANANG
rJMFF007D17+ GGGAACGGAAAAATCAGCGCCGAGGAACTGTTGCAGGTGCTGCGGAGGATGGGAGAGAGG
____________________________________________________________
consensus GGGAACGGAAAAATCAGCGCCGAGGAACTGTTGCAGGTGCTGCGGAGGATGGGAGAGAGG
. : . : . : . : . : . :
JMFF007D17- TGTAACTTGGATTCTTGCCGGAAAATGGTGAAGGGTGTCNATTCCNACNGCNATGGACTG
rJMFF007D17+ TGTAACTTGGATTCTTGCCGGAAAATGGTGAAGGGTGTCGATTCCGACGGCGATGGACTG
____________________________________________________________
consensus TGTAACTTGGATTCTTGCCGGAAAATGGTGAAGGGTGTCGATTCCGACGGCGATGGACTG
. : . : . : . : . : . :
JMFF007D17- ATTGATATCAAGGAATTTACNAANATGATGACNGCCGCCGGCACCACCNAACNTTTCTA
rJMFF007D17+ ATTGATATCAAGGAATTTACGAAGATGATGACGGCCGCCGGCACCACCAAACGTTTCTAA
____________________________________________________________
consensus ATTGATATCAAGGAATTTACGAAGATGATGACGGCCGCCGGCACCACCAAACGTTTCTAA
. : . : . : . : . : . :
rJMFF007D17+ TTTATTTGTTACGAGGATGTTTTGTGTTTATGCAGACAAACTTCAACAACTAAGGGAGAT
____________________________________________________________
consensus TTTATTTGTTACGAGGATGTTTTGTGTTTATGCAGACAAACTTCAACAACTAAGGGAGAT
. : . : . : . : . : . :
rJMFF007D17+ GGTTTACTTGTTTCCAGTCAATCTCGATGGAACAATAATTGAAGTTAACATGCAGATTGG
____________________________________________________________
consensus GGTTTACTTGTTTCCAGTCAATCTCGATGGAACAATAATTGAAGTTAACATGCAGATTGG
. : . : . : . : . : . :
rJMFF007D17+ TTTAATTTAGCCGTAACGTTTTCCTATTTAAAAATTGTTAGGGTACGAGAGTATGTGATT
____________________________________________________________
consensus TTTAATTTAGCCGTAACGTTTTCCTATTTAAAAATTGTTAGGGTACGAGAGTATGTGATT