| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002D16 | Sequence | 344 | 007767 (9) | gb|ABC47163.2| | 3e-60 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 769 | 003930 (9) | gb|ABC47163.2| | 3e-92 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
| JMFF003C03 | Sequence | 107 | 007767 (9) | 546 | 003930 (9) | gb|ABC47163.2| | 3e-47 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | |||
| JMFF014L14 | Sequence | 528 | 007767 (9) | gb|ABC47163.2| | 7e-86 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 699 | 003930 (9) | gb|ABC47163.2| | 3e-76 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
| JMFF015C21 | Sequence | 613 | 007767 (9) | gb|ABC47163.2| | 2e-101 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 649 | 003930 (9) | gb|ABC47163.2| | 3e-65 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
| JMFF016P06 | Sequence | 549 | 007767 (9) | gb|ABC47163.2| | 5e-110 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 816 | 003930 (9) | gb|ABC47163.2| | 8e-96 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
| JMFF021B11 | Sequence | 542 | 007767 (9) | gb|ABC47163.2| | 2e-107 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 771 | 003930 (9) | gb|ABC47163.2| | 1e-91 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
| JMSF010F22 | Sequence | 341 | 007767 (9) | gb|ABC47163.2| | 3e-54 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 724 | 003930 (9) | gb|ABC47163.2| | 6e-87 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
| JMSF018N15 | Sequence | 656 | 003930 (9) | gb|ABC47163.2| | 4e-62 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | |||||
| JMSF028G05 | Sequence | 635 | 007767 (9) | gb|ABC47163.2| | 5e-133 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n | 787 | 003930 (9) | gb|ABC47163.2| | 4e-84 | CDPK1 [Ipomoea nil] gb|AFO63177.1| calcium dependent protein kinase 1 [Ipomoea n |
This contig is upended
. : . : . : . : . : . :
rJMSF028G05+ GCTCAAGAAAGTAGCTCTTAAGGTAATTGCTGAAAA
rJMFF016P06+ ANCAAGCTCAAGAAAGTAGCTCTTAAGGTAATTGCTGAAAA
____________________________________________________________
consensus ANCAAGCTCAAGAAAGTAGCTCTTAAGGTAATTGCTGAAAA
. : . : . : . : . : . :
rJMSF028G05+ TCTTTCTGAAGAAGAAATTATTTGGTTTGAAGGAAATGTTCAAATCAATAGACACAGATG
rJMFF016P06+ TCTTTCTGAAGAAGAAATTA-TTGGTTTGAAGGAAATGTTCAAATCAATAGACACAGATG
rJMFF021B11+ TTGGTTTGAAGGAAATGTTCAAATCAATAGACACAGATG
rJMSF010F22+ AAATGTTCAAATCAATAGACACAGATG
rJMFF002D16+ TTGGTTTGAAGGAAATGTTCAAATCAATAGACACAGATG
____________________________________________________________
consensus TCTTTCTGAAGAAGAAATTATTTGGTTTGAAGGAAATGTTCAAATCAATAGACACAGATG
. : . : . : . : . : . :
rJMSF028G05+ ACAGTGGCACAATTACTTATGAAGAACTGAAAGCTGGTCTTACAAAAATGGGCACCAAGC
rJMFF016P06+ ACAGTGGCACAATTACTTATGAAGAACTGAAAGCTGGTCTTACAAAAATGGGCACCAAGC
rJMFF021B11+ ACAGTGGCACAATTACTTATGAAGAACTGAAAGCTGTTCTTACAAAAATGGGCACCAAGC
rJMSF010F22+ ACAGTGGCACAATTACTTATGAAGAACTGAAAGCTGGTCTTACAAAAATGGGCACCAAGC
rJMSF018N15+ GGCACCAAGC
rJMFF014L14+ CTTATGAAGAACTGAAAGCTGGTCTTACAAAAATGGGCACCAAGC
rJMFF002D16+ ACAGTGGCACAATTACTTATGAAGAACTGAAAGCTGGTCTTACAAAAATGGGCACCAAGC
____________________________________________________________
consensus ACAGTGGCACAATTACTTATGAAGAACTGAAAGCTGGTCTTACAAAAATGGGCACCAAGC
. : . : . : . : . : . :
rJMSF028G05+ TCTCAGAGTCAGAAGTTAGGCAATTGATGGAAGCGGCTGATGTTGATGGAAATGGAACTA
rJMFF016P06+ TCTCAGAGTCAGAAGTTAGGCAATTGATGGAAGCGGCTGATGTTGATGGAAATGGAACTA
rJMFF021B11+ TCTCAGAGTCAGAAGTTAGGCAATTGATGGAAGCGGCTGATGTTGATGGAAATGGAACTA
rJMSF010F22+ TCTCAGAGTCAGAAGTTAGGCAATTGATGGAAGCGGCTGATGTTGATGGAAATGGAACTA
rJMSF018N15+ TNTCAGAGTCAGAAGTTAGGCAATTGATGGAAGCGGCTGATGTTGATGGAAACGGAACTA
rJMFF014L14+ TCTCAGAGTCAGAAGTTAGGCAATTGATGGAAGCGGCTGATGTTGATGGAAATGGAACTA
rJMFF015C21+ TCAGAGTCAGAAGTTAGGCAATTGATGGAAGCGGCTGATGTTGATGGAAATGGAACTA
rJMFF002D16+ TCTCAGAGTCAGAAGTTAGGCAATTGATGGAAGCGGCTGATGTTGATGGAAATGGAACTA
____________________________________________________________
consensus TCTCAGAGTCAGAAGTTAGGCAATTGATGGAAGCGGCTGATGTTGATGGAAATGGAACTA
. : . : . : . : . : . :
rJMSF028G05+ TTGATTATCTTGAGTTCATCACAGCTACGATGCATATGAACCGTGTGGAAAGAGAAGACC
rJMFF016P06+ TTGATTATCTTGAGTTCATCACAGCTACGATGCATATGAACCGTGTGGAAAGAGAAGACC
rJMFF021B11+ TTGATTATCTTGAGTTCATCACAGCTACGATGCATATGAACCGTGTGGAAAGAGAAGACC
rJMSF010F22+ TTGATTATCTTGAGTTCATCACAGCTACGATGCATATGAACCGTGTGGAAAGAGAAGACC
rJMSF018N15+ TTGATTNTCTTGAGTTCATCACAGCTACGACGCATATGANCCGTGTGGAAAGAGAAGACC
rJMFF014L14+ TTGATTATCTTGAGTTCATCACAGCTACGATGCATATGAACCGTGTGGAAAGAGAAGACC
rJMFF003C03+ TTATCTTGAGTTCATCACAGNTNCGATGCATATGAACCGTGTGGAAAGAGAAGACC
rJMFF015C21+ TTGATTATCTTGAGTTCATCACAGCTACGATGCATATGAACCGTGTGGAAAGAGAAGACC
rJMFF002D16+ TTGATTATCTTGAGTTCATCACAGCTACGATGCATATGAACCGTGTGGAAAGAGAAGACC
____________________________________________________________
consensus TTGATTATCTTGAGTTCATCACAGCTACGATGCATATGAACCGTGTGGAAAGAGAAGACC
. : . : . : . : . : . :
rJMSF028G05+ ACTTGTACAAGGCTTTTGAGTATTTTGACAAGGACAAGAGCGGGTATATTACTATGGAAG
rJMFF016P06+ ACTTGTACAAGGCTTTTGAGTATTTTGACAAGGACAAGAGCGGGTATATTACTATGGAAG
rJMFF021B11+ ACTTGTACAAGGCTTTTGAGTATTTTGACAAGGACAAGAGCGGGTATATTACTATGGAAG
rJMSF010F22+ ACTTGTACAAGGCTTTTGAGTATTTTGACAAGGACAAGAGCGGGTATATTACTATGGAAG
rJMSF018N15+ ACTTGTACAAGGCTTTTGAGTATTNTGACAAGGACAAGAGCGGGTATATTACTATGGAAG
rJMFF014L14+ ACTTGTACAAGGCTTTTGAGTATTTTGACAAGGACAAGAGCGGGTATATTACTATGGAAG
rJMFF003C03+ ACTTGTACAAGGCTTTTGAGTATTTTGACAAGGACAAGAGCGGGTATATTACTATGGAAG
rJMFF015C21+ ACTTGTACAAGGCTTTTGAGTATTTTGACAAGGACAAGAGCGGGTATATTACTATGGAAG
rJMFF002D16+ ACTTGTACAAGGCTTTTGAGTATTTTGACAAGGACAAGAGCGGGTATATTACTATGGAAG
____________________________________________________________
consensus ACTTGTACAAGGCTTTTGAGTATTTTGACAAGGACAAGAGCGGGTATATTACTATGGAAG
. : . : . : . : . : . :
rJMSF028G05+ AATTGGAGCATTCCCTGAAGAAATACAACATTACCGATGAAAAGACAATAAAGGAGATCA
rJMFF016P06+ AATTGGAGCATTCCCTGAAGAAATACAACATTACCGATGAAAAGACAATAAAGGAGATCA
rJMFF021B11+ AATTGGAGCATTCCCTGAAGAAATACAACATTACCGATGAAAAGACAATAAAGGAGATCA
rJMSF010F22+ AATTGGAGCATTCCCTGAAGAAATACAACATTACCGATGAAAAGACAATAAAGGAGATCA
rJMSF018N15+ AATTGGAGCATTCCCTGAAGAAATACAACATTACCGATGAAAAGACAATAAAGGAGATCA
rJMFF014L14+ AATTGGAGCATTCCCTGAAGAAATACAACATTACCGATGAAAAGACAATAAAGGAGATCA
rJMFF003C03+ AATTGGAGCATTCCNTGAAGAAATACAACATTACCGATGAAAAGACAATAAAGGAGATCA
rJMFF015C21+ AATTGGAGCATTCCCTGAAGAAATACAACATTACCGATGAAAAGACAATAAAGGAGATCA
rJMFF002D16+ AATTGGAGCATTCCCTGAAGAAATACAACATTACCGATGAAAAGACAATAAAGGAGATCA
____________________________________________________________
consensus AATTGGAGCATTCCCTGAAGAAATACAACATTACCGATGAAAAGACAATAAAGGAGATCA
. : . : . : . : . : . :
rJMSF028G05+ TTGCAGAAGTTGACACAGATAACGATGGGAAAATCAATTATGATGAATTTGTGGCGATGA
rJMFF016P06+ TTGCAGAAGTTGACACAGATAACGATGGGAAAATCAATTATGATGAATTTGTGGCGATGA
rJMFF021B11+ TTGCAGAAGTTGACACAGATAACGATGGGAAAATCAATTATGATGAATTTGTGGCGATGA
rJMSF010F22+ TTGCAGAAGTTGACACAGATAACGATGGGAAAATCAATTATGATGAATTTGTGGCGATGA
rJMSF018N15+ TTGCAGAAGTTGNCACAGATNACGATGGGAAAATCAATTATGANGAATTTGTGGCGATGA
rJMFF014L14+ TTGCAGAAGTTGACACAGATAACGATGGGAAAATCAATTATGATGAATTTGTGGCGATGA
rJMFF003C03+ TTGCAGAAGTTGACACAGATAACGATGGGAAAATCAATTATGATGAATTTGTGGCGATGA
rJMFF015C21+ TTGCAGAAGTTGACACAGATAACGATGGGAAAATCAATTATGATGAATTTGTGGCGATGA
rJMFF002D16+ TTGCAGAAGTTGACACAGATAACGATGGGAAAATCAATTATGATGAATTTGTGGCGATGA
____________________________________________________________
consensus TTGCAGAAGTTGACACAGATAACGATGGGAAAATCAATTATGATGAATTTGTGGCGATGA
. : . : . : . : . : . :
rJMSF028G05+ TGAGGAAAGGCACCCCTGACTTGGTCACTAATAGGCGTCGTAGATGAAACCATGAAAGAA
rJMFF016P06+ TGAGGAAAGGCACCCCTGACTTGGTCACTAATAGGCGTCGTAGATGAAACCATGAAAGAA
rJMFF021B11+ TGAGGAAAGGCACCCCTGACTTGGTCACTAATAGGCGTCGTAGATGAAACCATGAAAGAA
rJMSF010F22+ TGAGGAAAGGCACCCCTGACTTGGTCACTAATAGGCGTCGTAGATGAAACCATGAAAGAA
rJMSF018N15+ NGAGGAAAGNCACCCCNGACTTGGTCACTNATNGGCGTCGTAGATGAAACCANGAAAGAA
rJMFF014L14+ TGAGGAAAGGCACCCCTGACTTGGTCACTAATAGGCGTCGTAGATGAAACCATGAAAGAA
rJMFF003C03+ TGAGGAAAGGCACCCCTGACTTGGTCACTAATAGGCGTCGTAGATGAAACCATGAAAGAA
rJMFF015C21+ TGAGGAAAGGCACCCCTGACTTGGTCACTAATAGGCGTCGTAGATGAAACCATGAAAGAA
rJMFF002D16+ TGAGGAAAGGCACCCCTGACTTGGTCACTAATAGGCGTCGTAGATGAAACCATGAAAGAA
____________________________________________________________
consensus TGAGGAAAGGCACCCCTGACTTGGTCACTAATAGGCGTCGTAGATGAAACCATGAAAGAA
. : . : . : . : . : . :
rJMSF028G05+ ACAAAAATATTTGTGTCGTGTTGCAATGTGCATGCGATATTCGGTTTGTTCTGTGTTGAG
rJMFF016P06+ ACAAAAATATTTGTGTCGTGTTGCAATGTGCATGCGATATTCGGTTTGTTCTGTGTTGAG
rJMFF021B11+ ACAAAAATATTTGTGTCGTGTTGCAATGTGCATGCGATATTCGGTTTGTTCTGTGTTGAG
rJMSF010F22+ ACAAAAATATTTGTGTCGTGTTGCAATGTGCATGCGATATTCGGTTTGTTCTGTGTTGAG
rJMSF018N15+ NCAAAAATANNTGTNTCGTGTTGCAATGTGCATGCGATATTCGGTTTGTTCTNTGTTGAG
rJMFF014L14+ ACAAAAATATTTGTGTCGTGTTGCAATGTGCATGCGATATTCGGTTTGTTCTGTGTTGAG
rJMFF003C03+ ACAAAAATATTTGTGTCGTGTTGCAATGTGCATGCGATATTCGGTTTGTTCTGTGTTGAG
rJMFF015C21+ ACAAAAATATTTGTGTCGTGTTGCAATGTGCATGCGATATTCGGTTTGTTCTGTGTTGAG
rJMFF002D16+ ACAAAAATATTTGTGTCGTGTTGCAATGTGCATGCGATATTCGGTTTGTTCTGTGTTGAG
____________________________________________________________
consensus ACAAAAATATTTGTGTCGTGTTGCAATGTGCATGCGATATTCGGTTTGTTCTGTGTTGAG
. : . : . : . : . : . :
rJMSF028G05+ CAA-TTTGGATATGTGCATGGGAATGTACATGGTTTACTGTACCTATCCATCCCTCATTT
rJMFF016P06+ CAA-TTTGGATATGTGCATGGGAATGTACATGGTTTACTGTACCTATCCATCCCTCATTT
rJMFF021B11+ CAA-TTTGGATATGTGCATGGGAATGTACATGGTTTACTGTACCTATCCATCCCTCATTT
rJMSF010F22+ CAA-TTTGGATATGTGCATGGGAATGTACATGGTTTACTGTACCTATCCATCCCTCATTT
rJMSF018N15+ CAANCTTGGATATGTNCATGGGAATGTACATGGTTTACTGTACCTATCCATCCCTCATTT
rJMFF014L14+ CAA-TTTGGATATGTGCATGGGAATGTACATGGTTTACTGTACCTATCCATCCCTCATTT
rJMFF003C03+ CAA-TTTGGATATGTGCATGGGAATGTACATGGTTTACTGTACCTATCCATCCCTCATTT
rJMFF015C21+ CAA-TTTGGATATGTGCATGGGAATGTACATGGTTTACTGTACCTATCCATCCCTCATTT
rJMFF002D16+ CAA-TTTGGATATGTGCATGGGAATGTACATGGTTTACTGTACCTATCCATCCCTCATTT
____________________________________________________________
consensus CAA-TTTGGATATGTGCATGGGAATGTACATGGTTTACTGTACCTATCCATCCCTCATTT
. : . : . : . : . : . :
rJMSF028G05+ TGGAGGGAGAGCAAGATATA-CAGTCTGCTTGCTAAAGTGTTTTCTTTGAGAGGTTGTGC
rJMFF016P06+ TGGAGGGAGAGCAAGATATA-CAGTCTGCTTGCTAAAGTGTTTTCTTTGAGAGGTTGTGC
rJMFF021B11+ TGGAGGGAGAGCAAGATATA-CAGTCTGCTTGCTAAAGTGTTTTCTTTGAGAGGTTGTGC
rJMSF010F22+ TGGAGGGAGAGCAAGATATA-CAGTCTGCTTGCTAAAGAGTTTTCTTTGAGAGGTTGTGC
rJMSF018N15+ TGGAGGGNGAGCAAGATATATCAGTCTGCTTGNTAAAGTGTTTTCTTTGNGAGGTTGTGC
rJMFF014L14+ TGGAGGGAGAGCAAGATATA-CAGTCTGCTTGCTAAAGTGTTTTCTTTGAGAGGTTGTGC
rJMFF003C03+ TGGAGGGAGAGCAAGATATA-CAGTCTGCTTGCTAAAGTGTTTTCTTTGAGAGGTTGTGC
rJMFF015C21+ TGGAGGGAGAGCAAGATATA-CAGTCTGCTTGCTAAAGTGTTTTCTTTGAGAGGTTGTGC
rJMFF002D16+ TGGAGGGAGAGCAAGATATA-CAGTCTGCTTGCTAAAGTGTTTTCTTTGAGAGGTTGTGC
____________________________________________________________
consensus TGGAGGGAGAGCAAGATATA-CAGTCTGCTTGCTAAAGTGTTTTCTTTGAGAGGTTGTGC
. : . : . : . : . : . :
rJMSF028G05+ TGCTGATCAGAGATAGGTTATACAACTGGGAGAGGAAGATCTGTTCATACGCTACTCAGT
rJMFF016P06+ TGCTGATCAGAGATAGGTTATACAACTGGGAGAGGAAGATCTGTTCATACGCTACTCAGT
rJMFF021B11+ TGCTGATCAGAGATAGGTTATACAACTGGGAGAGGAAGATCTGTTCATACGCTACTCAGT
rJMSF010F22+ TGCTGATCAGAGATAGGTTATACAACTGGGAGAGGAAGATCTGTTCATACGCTACTCAGT
rJMSF018N15+ TNCTGATCAGAGATAGGTTATACAACTGGGAGAGGAAGATCTGTTCATCCGCTACTCAG
rJMFF014L14+ TGCTGATCAGAGATAGGTTATACAACTGGGAGAGGAAGATCTGTTCATACGCTACTCAGT
rJMFF003C03+ TGCTGATCAGAGATAGGTTATACAACTGGGAGAGGAAGATCTGTTCATNCGNTACTCAGT
rJMFF015C21+ TGCTGATCAGAGATAGGTTATACAACTGGGAGAGGAAGATCTGTTCATACGCTACTCAGT
rJMFF002D16+ TGCTGATCAGAGATAGGTTATACAACTGGGAGAGGAAGATCTGTTCATACGCTACTCAGT
____________________________________________________________
consensus TGCTGATCAGAGATAGGTTATACAACTGGGAGAGGAAGATCTGTTCATACGCTACTCAGT
. : . : . : . : . : . :
rJMSF028G05+ TATAAATTGTAAATTGTACACTTCAATGTTGTT
rJMFF016P06+ TATAAATTGTAAATTGTACACTTCAATGTTGTTTACTCTCTCTTTCAAATAAATAAAA
rJMFF021B11+ TATAAATTGTAAATTGTACACTTCAATGTTGTTTACTCTCTCTTTCAAATAAATAAAA
rJMSF010F22+ TATAAATTGTAAATTGTACACTTCAATGCTGTT
rJMFF014L14+ TATAAAT--AAAATTGTACACTTCAATGTTGTTTACTCTCTCTTTCAAATAAATAAAA
rJMFF003C03+ TATAAATTGTAA
rJMFF015C21+ TATAAATTGTAAATTGTACACTTCAATGTTGTTTACTCTCTCTTTCAAATAAA
rJMFF002D16+ TATAAATTGTAAATTGTACACTTCAATGTTGTTTACTCTCTCTTTCAAATAAATAAAATA
____________________________________________________________
consensus TATAAATTGTAAATTGTACACTTCAATGTTGTTTACTCTCTCTTTCAAATAAATAAAATA