Contig 003926:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033G05Sequence688003926 (3)ref|XP_006363022.1|1e-42PREDICTED: scarecrow-like transcription factor PAT1-like [Solanum tuberosum]735001449 (3)ref|XP_009784447.1|3e-131PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana sylvestris] ref|
JMSF040O19Sequence659003926 (3)ref|XP_002272334.1|8e-37PREDICTED: scarecrow-like transcription factor PAT1 [Vitis vinifera] ref|XP_0106733001449 (3)ref|XP_009784447.1|6e-130PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana sylvestris] ref|
JMSF052P23Sequence581003926 (3)ref|XP_007215518.1|3e-16hypothetical protein PRUPE_ppa003702mg [Prunus persica] gb|EMJ16717.1| hypotheti803001449 (3)ref|XP_009784447.1|2e-142PREDICTED: scarecrow-like transcription factor PAT1 [Nicotiana sylvestris] ref|

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF040O19+ GG
JMSF033G05+ CCATCATTTGTCTCCAGCTGTCTATTTCCGG
                      ____________________________________________________________
consensus CCATCATTTGTCTCCAGCTGTCTATTTCCGG
 
. : . : . : . : . : . :
JMSF040O19+ GGACGCAATACTGCTCGGGAATGTGTTATCGTGACTCTCCAGAACATCTGAATCGGGTCC
JMSF033G05+ GGACGCAATACTGCTCGGGAATGTGTTATCGTGACTCTCCAGAACATCTGAATCGGGTCC
                      ____________________________________________________________
consensus GGACGCAATACTGCTCGGGAATGTGTTATCGTGACTCTCCAGAACATCTGAATCGGGTCC
 
. : . : . : . : . : . :
JMSF040O19+ AAGCATTGCAGTTTCTAATTCCTTTAGTTTGTGGATGAAACTACTCATATCATCTGTAAT
JMSF033G05+ AAGCATTGCAGTTTCTAATTCCTTTAGTTTGTGGATGAAACTACTCATATCATCTGTAAT
                      ____________________________________________________________
consensus AAGCATTGCAGTTTCTAATTCCTTTAGTTTGTGGATGAAACTACTCATATCATCTGTAAT
 
. : . : . : . : . : . :
JMSF040O19+ GCAAGACCCGCTAATAGGGGAACCATAGTTGTTGTCTGATGGGTATGAACGAGAACCCTG
JMSF033G05+ GCAAGACCCGCTAATAGGGGAACCATAGTTGTTGTCTGATGGGTATGAACGAGAACCCTG
JMSF052P23+ GAACCATAGTTGTTGTCTGATGGGTATGAACGAGAACCCTG
                      ____________________________________________________________
consensus GCAAGACCCGCTAATAGGGGAACCATAGTTGTTGTCTGATGGGTATGAACGAGAACCCTG
 
. : . : . : . : . : . :
JMSF040O19+ CTGGGACATGGGGCTTCCATATAGAGCACGGCTCTCGCTCACCGAGGATGATTCCAGAGT
JMSF033G05+ CTGGGACATGGGGCTTCCATATAGAGCACGGCTCTCGCTCACCGAGGATGATTCCAGAGT
JMSF052P23+ CTGGGACATGGGGCTTCCATATAGAGCACGGCTCTCGCTCACCGAGGATGATTCCAGAGT
                      ____________________________________________________________
consensus CTGGGACATGGGGCTTCCATATAGAGCACGGCTCTCGCTCACCGAGGATGATTCCAGAGT
 
. : . : . : . : . : . :
JMSF040O19+ GCAATAAAGGTTACGAGAAGCATGAACGGGGTTAGCCACATTCGTGTTGTTGTAGCTCAG
JMSF033G05+ GCAATAAAGGTTACGAGAAGCATGAACGGGGTTAGCCACATTCGTGTTGTTGTAGCTCAG
JMSF052P23+ GCAATAAAGGTTACGAGAAGCATGAACGGGGTTAGCCACATTCGTGTTGTTGTAGCTCAG
                      ____________________________________________________________
consensus GCAATAAAGGTTACGAGAAGCATGAACGGGGTTAGCCACATTCGTGTTGTTGTAGCTCAG
 
. : . : . : . : . : . :
JMSF040O19+ CTCGTGGTCTAAAATTTGAAACTGAGGCAGACAATAAGGGTCAGCCTTTTGCACAGGTGG
JMSF033G05+ CTCGTGGTCTAAAATTTGAAACTGAGGCAGACAATAAGGGTCAGCCTTTTGCACAGGTGG
JMSF052P23+ CTCGTGGTCTAAAATTTGAAACTGAGGCAGACAATAAGGGTCAGCCTTTTGCACAGGTGG
                      ____________________________________________________________
consensus CTCGTGGTCTAAAATTTGAAACTGAGGCAGACAATAAGGGTCAGCCTTTTGCACAGGTGG
 
. : . : . : . : . : . :
JMSF040O19+ ATAGCATAACACGTTAGACATGCCCGTTCTCCTGAGACGTTGTGCTGCTTGCATCGAGAA
JMSF033G05+ ATAGCATAACACGTTAGACATGCCCGTTCTCCTGAGACGTTGTGCTGCTTGCATCGAGAA
JMSF052P23+ ATAGCATAACACGTTAGACATGCCCGTTCTCCTGAGACGTTGTGCTGCTTGCATCGAGAA
                      ____________________________________________________________
consensus ATAGCATAACACGTTAGACATGCCCGTTCTCCTGAGACGTTGTGCTGCTTGCATCGAGAA
 
. : . : . : . : . : . :
JMSF040O19+ CCAGTCTTTTTCAATGCCACTCAACTCAGCAGATTGAATCGAAGCACTAGGGATAACTCA
JMSF033G05+ CCAGTCTTTTTCAATGCCACTCAACTCAGCAGATTGAATCGAAGCACTAGGGATAACTCA
JMSF052P23+ CCAGTCTTTTTCAATGCCACTCAACTCAGCAGATTGAATCGAAGCACTAGGGATAACTCA
                      ____________________________________________________________
consensus CCAGTCTTTTTCAATGCCACTCAACTCAGCAGATTGAATCGAAGCACTAGGGATAACTCA
 
. : . : . : . : . : . :
JMSF040O19+ TAAAACGAGTGCCTCCTTTTCACTCCTCGACAGTAAGAGAAGCCTCTCTGCTGAGAAACG
JMSF033G05+ TAAAACGAGTGCCTCCTTTTCACTCCTCGACAGTAAGAGAAGCCTCTCTGCTGAGAAACG
JMSF052P23+ TAAAACGAGTGCCTCCTTTTCACTCCTCGACAGTAAGAGAAGCCTCTCTGCTGAGAAACG
                      ____________________________________________________________
consensus TAAAACGAGTGCCTCCTTTTCACTCCTCGACAGTAAGAGAAGCCTCTCTGCTGAGAAACG
 
. : . : . : . : . : . :
JMSF040O19+ GAAAGTATACTATATAGACGAAGGATCTCTAGTAGTAAATGGCAATGACCTTAAAATGGA
JMSF033G05+ GAAAGTATACTATATAGACGAAGGATCTCTAGTAGTAAATGGCAATGACCTTAAAATGGA
JMSF052P23+ GAAAGTATACTATATAGACGAAGGATCTCTAGTAGTAAATGGCAATGACCTTAAAATGGA
                      ____________________________________________________________
consensus GAAAGTATACTATATAGACGAAGGATCTCTAGTAGTAAATGGCAATGACCTTAAAATGGA
 
. : . : . : . : . : . :
JMSF040O19+ GAATCTCCATCTCTTTGCAAGCTGCTTCTTTGACTCTTCATGACACTGCAAACC
JMSF033G05+ GAATCTCCATCTCTTTGCAAGCTGCTTCTTTGACTCTTCATGACACTGCAAACC
JMSF052P23+ GAATCTCCATCTCTTTGCAAGCTGCTTCTTTGACTCTTCATGACACTGCAAACCAAAACT
                      ____________________________________________________________
consensus GAATCTCCATCTCTTTGCAAGCTGCTTCTTTGACTCTTCATGACACTGCAAACCAAAACT
 
. : . : . : . : . : . :
JMSF052P23+ CTGTAATGAGGGAAGAGAGAGTGGAGAGCAGAGCAGATGACCCTATCGGTCCTACAGACC
                      ____________________________________________________________
consensus CTGTAATGAGGGAAGAGAGAGTGGAGAGCAGAGCAGATGACCCTATCGGTCCTACAGACC