Contig 003916:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS044F11Sequence621003916 (3)ref|XP_009629413.1|1e-53PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X2 [Nicotiana tomentosi
JMSF001G12Sequence247003916 (3)729010111 (2)ref|XP_004247458.1|152PREDICTED: zinc finger protein CONSTANS-LIKE 13 [Solanum lycopersicum]
JMSF051O06Sequence675003916 (3)ref|XP_009629413.1|2e-41PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X2 [Nicotiana tomentosi665010111 (2)ref|XP_004247458.1|125PREDICTED: zinc finger protein CONSTANS-LIKE 13 [Solanum lycopersicum]

Alignment

This contig is upended


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JMFS044F11+                              CGTCGCCGGCGCCGCCGTAACGATCGTCGTCTTGAAGAAGG
                      ____________________________________________________________
consensus                                CGTCGCCGGCGCCGCCGTAACGATCGTCGTCTTGAAGAAGG
 
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JMFS044F11+           GCCTTTTTCCCGACATCCTGGAACCCGAAAACCGCCAGCAGTTCCGCGACGGAAGGGCAG
JMSF051O06+                                                        GCGACGGNAGGGCAG
                      ____________________________________________________________
consensus             GCCTTTTTCCCGACATCCTGGAACCCGAAAACCGCCAGCAGTTCCGCGACGGAAGGGCAG
 
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JMFS044F11+           CCGCTGAAGCCCTCGAGCGGGCGGCGGACGTGCGGCGCCGGCGAGAGGCAGAGAGTGTGG
JMSF051O06+           CCGCTGAAGCCCTCGAGCGGGCGGCGGACGTGCGGCGCCGGCGAGAGGCAGAGAGTGTGG
                      ____________________________________________________________
consensus             CCGCTGAAGCCCTCGAGCGGGCGGCGGACGTGCGGCGCCGGCGAGAGGCAGAGAGTGTGG
 
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JMFS044F11+           GACTCCCAGTCGCAGTTCTGGCAGAAGACGGCGGCGTGGTTGCAGCAGAAGATGGTGGCC
JMSF051O06+           GACTCCCAGTCGCAGTTCTGGCAGAAGACGGCGGCGTGGTTGCAGCAGAAGATGGTGGCC
                      ____________________________________________________________
consensus             GACTCCCAGTCGCAGTTCTGGCAGAAGACGGCGGCGTGGTTGCAGCAGAAGATGGTGGCC
 
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JMFS044F11+           GGAGAGGCATCGCAGGCGTCGCAGAGCAGGGAGCGCGTGTGCTTGGTGAAGAGAGGGTTC
JMSF051O06+           GGAGAGGCATCGCAGGCGTCGCAGAGCAGGGAGCGCGTGTGCTTGGTGAAGAGAGGGTTC
                      ____________________________________________________________
consensus             GGAGAGGCATCGCAGGCGTCGCAGAGCAGGGAGCGCGTGTGCTTGGTGAAGAGAGGGTTC
 
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JMFS044F11+           GTGGAGTGCACCTCCCGGTCGCAGCCGAGGCAGAGACTCGCCGAATCGGCTCTGCAGTAC
JMSF051O06+           GTGGAGTGCACCTCCCGGTCGCAGCCGAGGCAGAGACTCGCCGAATCGGCTCTGCAGTAC
                      ____________________________________________________________
consensus             GTGGAGTGCACCTCCCGGTCGCAGCCGAGGCAGAGACTCGCCGAATCGGCTCTGCAGTAC
 
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JMFS044F11+           AGCACCGCCGTGGCCGACCCGCAGAAATCGCAGTTCCGATTACTCTTCCCCTCCTCCGCC
JMSF051O06+           AGCACCGCCGTGGCCGACCCGCAGAAATCGCAGTTCCGATTACTCTTCCCCTCCTCCGCC
                      ____________________________________________________________
consensus             AGCACCGCCGTGGCCGACCCGCAGAAATCGCAGTTCCGATTACTCTTCCCCTCCTCCGCC
 
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JMFS044F11+           GCCTCTTGCTCCTCTTTCAGCTCCGTCATCTCTGCAATTCAAGACTGCAACTTTCCCCCC
JMSF001G12+                           TCAGCTCCGTCATCTCTGCAATTCAAGACTGCAACTTTCCCCCC
JMSF051O06+           GCCTCTTGCTCCTCTTTCAGCTCCGTCATCTCTGCAATTCAAGACTGCAACTTTCCCCCC
                      ____________________________________________________________
consensus             GCCTCTTGCTCCTCTTTCAGCTCCGTCATCTCTGCAATTCAAGACTGCAACTTTCCCCCC
 
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JMFS044F11+           CTCCTTTCAGCCCTTTCTCAAAACAACAAAAACCCCTCTTTTTCTTTCTTGAAAAGGAAT
JMSF001G12+           CTCCTTTCAGCCCTTTCTCAAAACAACAAAAACCCCTCTTTTTCTTTCTTGAAAAGGAAT
JMSF051O06+           CTCCTTTCAGCCCTTTCTCAAAACAACAAAAACCCCTCTTTTTCTTTCTTGAAAAGGAAT
                      ____________________________________________________________
consensus             CTCCTTTCAGCCCTTTCTCAAAACAACAAAAACCCCTCTTTTTCTTTCTTGAAAAGGAAT
 
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JMFS044F11+           CAAAAACAGAAATGGGAAATGGTTTAGGTAACCACTGGTCTACTCACTGTGACTGAGAAG
JMSF001G12+           CAAAAACAGAAATGGGAAATGGTTTAGGTAACCACTGGTCTACTCACTGTGACTGAGAAG
JMSF051O06+           CAAAAACAGAAATGGGAAATGGTTTAGGTAACCACTGGTCTACTCACTGTGACTGAGAAG
                      ____________________________________________________________
consensus             CAAAAACAGAAATGGGAAATGGTTTAGGTAACCACTGGTCTACTCACTGTGACTGAGAAG
 
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JMFS044F11+           ATAGAGAGAGAAGGGATGGGAAATTGGGGAAATCTCTTGG                    
JMSF001G12+           ATAGAGAGAGAAGGGATGGGAAATTGGGGAAATCTCTTGGGAGAATCGCAGATTTGAGAT
JMSF051O06+           ATAGAGAGAGAAGGGATGGGAAATTGGGGAAATCTCTTGGGAGAATCGCAGATTTGAGAT
                      ____________________________________________________________
consensus             ATAGAGAGAGAAGGGATGGGAAATTGGGGAAATCTCTTGGGAGAATCGCAGATTTGAGAT
 
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JMSF001G12+           GACAGACAAGCTGACATCGATT                                      
JMSF051O06+           GACAGACAAGCTGACATCGATTAAGGATCTTTTTCGTTTTTTGTTGCAAATTTACTGCGC
                      ____________________________________________________________
consensus             GACAGACAAGCTGACATCGATTAAGGATCTTTTTCGTTTTTTGTTGCAAATTTACTGCGC
 
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JMSF051O06+           CACCAACTTCTAGCTAGAATAGTAGTACGCACTACCTTATCCACCTTTTCGGCAAAGATC
                      ____________________________________________________________
consensus             CACCAACTTCTAGCTAGAATAGTAGTACGCACTACCTTATCCACCTTTTCGGCAAAGATC