| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008J01 | Sequence | 335 | 003904 (5) | gb|AAV88066.1| | 2e-05 | NBS-LRR protein [Ipomoea batatas] | 740 | 013891 (4) | ref|XP_009618655.1| | 8e-28 | PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana to |
| JMSF016L20 | Sequence | 481 | 003904 (5) | gb|AAV88066.1| | 5e-08 | NBS-LRR protein [Ipomoea batatas] | 682 | 022509 | |||
| JMSF028K15 | Sequence | 390 | 003904 (5) | gb|AAV88066.1| | 5e-08 | NBS-LRR protein [Ipomoea batatas] | |||||
| JMSF035N18 | Sequence | 669 | 003904 (5) | gb|AAV88066.1| | 2e-07 | NBS-LRR protein [Ipomoea batatas] | 655 | 013891 (4) | ref|XP_009618655.1| | 2e-26 | PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana to |
| JMSF050I13 | Sequence | 677 | 003904 (5) | gb|AAV88066.1| | 2e-07 | NBS-LRR protein [Ipomoea batatas] | 743 | 013891 (4) | ref|XP_006357457.1| | 6e-28 | PREDICTED: putative late blight resistance protein homolog R1B-23-like [Solanum |
This contig is upended
. : . : . : . : . : . :
JMSF035N18+ GATAGATAGTTACAC
JMSF050I13+ TTGATAGATAGNTACAC
____________________________________________________________
consensus TTGATAGATAGTTACAC
. : . : . : . : . : . :
JMSF035N18+ TCTTTTAAGATCAGTATGATATGTGTATACCCTTAGGTGTTTTGTGAGGCCTACACACAA
JMSF050I13+ TCTTTTAAGATCAGTATGATATGTGTATACCCTTAGGTGTTTNGTGAGGCCTACACACAA
____________________________________________________________
consensus TCTTTTAAGATCAGTATGATATGTGTATACCCTTAGGTGTTTTGTGAGGCCTACACACAA
. : . : . : . : . : . :
JMSF035N18+ GTCCAGCCCAACAGACGAAAACATACCTCCATGCACACGTCACCGATCCCTTCAGGATTC
JMSF050I13+ GTCCAGCCCAACAGACGAAAACATACCTCCATGCACACGTCACCGATCCCTTCAGGATTC
____________________________________________________________
consensus GTCCAGCCCAACAGACGAAAACATACCTCCATGCACACGTCACCGATCCCTTCAGGATTC
. : . : . : . : . : . :
JMSF035N18+ ATCCATTCCCAGCCTAATCCTGCATCTGACCTTGCCAAGCTTCAACCTCTTGAATGGCAT
JMSF050I13+ ATCCATTCCCAGCCTAATCCTGCATCTGACCTTGCCAAGCTTCAACCTCTTGAATGGCAT
____________________________________________________________
consensus ATCCATTCCCAGCCTAATCCTGCATCTGACCTTGCCAAGCTTCAACCTCTTGAATGGCAT
. : . : . : . : . : . :
JMSF035N18+ CAATGTCTCTTATTGCTTCTTCCAAAATACAACCAAGTTTGAACGAATACCCTTGTGGTT
JMSF050I13+ CAATGTCTCTTATTGCTTCTTCCAAAATACAACCAAGTTTGAACGAATACCCTTGTGGTT
____________________________________________________________
consensus CAATGTCTCTTATTGCTTCTTCCAAAATACAACCAAGTTTGAACGAATACCCTTGTGGTT
. : . : . : . : . : . :
JMSF016L20+ TCCTCATAAAGATGTACGA
JMSF035N18+ TCTCCCCAAAAAGATCTGCAATTCCCAAGTCTTCGTTTTCTTCCTCATAAAGATGTACGA
JMSF028K15+ CCAAGTCTTCGTTTTCTTCCTCATAAAGATGTACGA
JMSF050I13+ TCTCCCCAAAAAGATCTGCAATTCCCAAGTCTTCGTTTTCTTCCTCATAAAGATGTACGA
____________________________________________________________
consensus TCTCCCCAAAAAGATCTGCAATTCCCAAGTCTTCGTTTTCTTCCTCATAAAGATGTACGA
. : . : . : . : . : . :
JMSF016L20+ TTTGGAATTCAATTTCATCTTCTACTCTGAAAGCCACATCTCTGAGCTTAGTTTCCAAGT
JMSF035N18+ TTTGGAATTCAATTTCATCTTCTACTCTGAAAGCCACATCTCTGAGCTTAGTTTCCAAGT
JMSF028K15+ TTTGGAATTCAATTTCATCTTCTACTCNGAAAGCCACATCTCTGAGCTTAGTTTCCAAGT
JMSF008J01+ TCTGAAAGCCACATCTCTGAGCTTAGTTTCCAAGT
JMSF050I13+ TTTGGAATTCAATTTCATCTTCTACTCTGAAAGCCACATCTCTGAGCTTAGTTTCCAAGT
____________________________________________________________
consensus TTTGGAATTCAATTTCATCTTCTACTCTGAAAGCCACATCTCTGAGCTTAGTTTCCAAGT
. : . : . : . : . : . :
JMSF016L20+ GTTTAATAGCTTGGATACCATCCATCCGGTTCTCATCGAACAGCTCTATCAGATCACCAA
JMSF035N18+ GTTTAATAGCTTGGATACCATCCATCCGGTTCTCATCGAACAGCTCTATCAGATCACCAA
JMSF028K15+ GTTTAATAGCTTGGATACCATCCATCCGGTTCTCATCGAACAGCTCTATCAGATCACCAA
JMSF008J01+ GTTTAATAGCTTGGATACCATCCATCCGGTTCTCATCGAACAGCTCTATCAGATCACCAA
JMSF050I13+ GTTTAATAGCTTGGATACCATCCATCCGGTTCTCATCGAACAGTTCTATCAGATCACCAA
____________________________________________________________
consensus GTTTAATAGCTTGGATACCATCCATCCGGTTCTCATCGAACAGCTCTATCAGATCACCAA
. : . : . : . : . : . :
JMSF016L20+ GTTTCTGGTGGAGATTTTGGATCAACTTTTCATTGGTAGGGATGAGTTGCTTTCGTCGTA
JMSF035N18+ GTTTCTGGTGGAGATTTTGGATCAACTTTTCATTGGTAGGGATGAGTTGCTTTCGTCGTA
JMSF028K15+ GTTTCTGGTGGAGATTTTGGATCAACTTTTCATTGGTAGGGATGAGTTGCTTTCGTCGTA
JMSF008J01+ GTTTCTGGTGGAGATTTTGGATCAACTTTTCATTGGTAGGGATGAGTTGCTTTCGTCGTA
JMSF050I13+ GTTTCTGGTGGAGATTTTGGATCAACTTTTCATTGGTAGGGATGAGTTGCTTTCGTCGTA
____________________________________________________________
consensus GTTTCTGGTGGAGATTTTGGATCAACTTTTCATTGGTAGGGATGAGTTGCTTTCGTCGTA
. : . : . : . : . : . :
JMSF016L20+ CGATTGGGCGTGGCAGAGGTTGCAAGAACTCAAGCTCAATCGTCCTCACAAGAGAATTAA
JMSF035N18+ CGATTGGGCGTGGCAGAGGTTGCAAGAACTCAAGCTCAATCGTCCTCACAAGAGAATTAA
JMSF028K15+ CGATTGGGCGTGGCAGAGGTTGCAAGAACTCAAGCTCAATCGTCCTCACAAGAGAATTAA
JMSF008J01+ CGATTGGGCGTGGCAGAGGTTGCAAGAACTCAAGCTCAATCGTCCTCACAAGAGAATTAA
JMSF050I13+ CGATTGGGCGTGGCAGAGGTTGCAAGAACTCAAGCTCAATCGTCCTCACAAGAGAATTAA
____________________________________________________________
consensus CGATTGGGCGTGGCAGAGGTTGCAAGAACTCAAGCTCAATCGTCCTCACAAGAGAATTAA
. : . : . : . : . : . :
JMSF016L20+ CAGCAACACAAGCCATTCTTCAATTCTCAATCACTTAGTATGTATGTATGTATGTATGTA
JMSF035N18+ CAGCAACACAAGCCATTCTTCAATTCTCAATCACTTAGTATGTATGTATGTATGTATGTA
JMSF028K15+ CAGCAACACAAGCCATTCTTCAATTCTCAATCACTTAGTATGTATGTATGTATGTATGTA
JMSF008J01+ CAGCAACACAAGCCATTCTTCAATTCTCAATCACTTAGTATGTATGTATGTATGTATGTA
JMSF050I13+ CAGCAACACAAGCCATTCTTCAATTCTCAATCACTTAGTATGTATGTATGTATGTATGTA
____________________________________________________________
consensus CAGCAACACAAGCCATTCTTCAATTCTCAATCACTTAGTATGTATGTATGTATGTATGTA
. : . : . : . : . : . :
JMSF016L20+ TGTAGTGTGTATAGTAATGTAATGTCTGGGTGAAGAATTGAAGCTTAATCAGC
JMSF035N18+ TGTAGTGTGTATAGTAATGTAATGTCTGGGTGAAGAATTGAAGCTTAATCAGC
JMSF028K15+ TGTAGTGTGTATAGTAATGTAATGTCTGGGTGAAGAATTGAAGCTTAATCAGC
JMSF008J01+ TGTAGTGTGTATAGTAATGTAATGTCTGGGTGAAGAATTGAAGCTTAATCAGC
JMSF050I13+ TGTAGTGTGTATAGTAATGTAATGTCTGGGTGAAGAATTGAAGCTTAATCAGCAGAAGCC
____________________________________________________________
consensus TGTAGTGTGTATAGTAATGTAATGTCTGGGTGAAGAATTGAAGCTTAATCAGCAGAAGCC