Contig 003892:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018G02Sequence509003892 (6)ref|XP_006357482.1|1e-69PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum]710013814 (6)ref|XP_009628597.1|4e-35PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]
JMFF044H10Sequence627003892 (6)ref|XP_006367642.1|4e-91PREDICTED: adenylate cyclase, terminal-differentiation specific-like [Solanum t552013814 (6)ref|XP_009628597.1|1e-29PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]
JMSF018K17Sequence575003892 (6)ref|XP_009782976.1|2e-07PREDICTED: vacuolar protein sorting-associated protein 27-like [Nicotiana sylve785013814 (6)ref|XP_004248167.1|5e-67PREDICTED: bromodomain-containing protein 4 [Solanum lycopersicum]
JMSF024K20Sequence631003892 (6)ref|XP_006367642.1|7e-93PREDICTED: adenylate cyclase, terminal-differentiation specific-like [Solanum t761013814 (6)ref|XP_004248167.1|3e-62PREDICTED: bromodomain-containing protein 4 [Solanum lycopersicum]
JMSF038L23Sequence719003892 (6)ref|XP_009628959.1|1e-74PREDICTED: extensin-like [Nicotiana tomentosiformis]841013814 (6)ref|XP_009628597.1|5e-75PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]
JMSF049B10Sequence699003892 (6)ref|XP_009782976.1|7e-24PREDICTED: vacuolar protein sorting-associated protein 27-like [Nicotiana sylve800013814 (6)ref|XP_009628597.1|2e-73PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF038L23+                                 AAACAGCAGATGATGATGGTCTAGCCTGTGGTTGCATA
                      ____________________________________________________________
consensus                                   AAACAGCAGATGATGATGGTCTAGCCTGTGGTTGCATA
 
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JMSF038L23+           GATGGTTGTTGTGGCTGTGGTTGTTGGGTCTGCTGAGGTAACTGCGGCAACCACGGCTGC
                      ____________________________________________________________
consensus             GATGGTTGTTGTGGCTGTGGTTGTTGGGTCTGCTGAGGTAACTGCGGCAACCACGGCTGC
 
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JMSF038L23+           TGATATGGAAGTCCCGGTTGAACCGGCGTGGTCTGATTTAGTTGAGCTTGTGCAGGTTGT
                      ____________________________________________________________
consensus             TGATATGGAAGTCCCGGTTGAACCGGCGTGGTCTGATTTAGTTGAGCTTGTGCAGGTTGT
 
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JMSF038L23+           GGTGGCAGCCTAGCAACTTCTTGCATTTGGGGAGTCCGGTACTGAGACTCAGATGGCATG
                      ____________________________________________________________
consensus             GGTGGCAGCCTAGCAACTTCTTGCATTTGGGGAGTCCGGTACTGAGACTCAGATGGCATG
 
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JMSF038L23+           TATTGACCTTGAGACAGCGGCATCTGGGTCGGTGACAGATAGTATCCCTGTGATTGCGTA
                      ____________________________________________________________
consensus             TATTGACCTTGAGACAGCGGCATCTGGGTCGGTGACAGATAGTATCCCTGTGATTGCGTA
 
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JMSF038L23+           ATAACTTGGGATGGAATTGGCGGGACGGATGGCTGTTGTGGCTGCTCCATATGTCTGGTA
                      ____________________________________________________________
consensus             ATAACTTGGGATGGAATTGGCGGGACGGATGGCTGTTGTGGCTGCTCCATATGTCTGGTA
 
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JMSF038L23+           GTATGTGAAGTTTGCGGTGGTGCTACTTGGTGCGGCAATGCAAGTGCCAGTTGCTGCCCG
                      ____________________________________________________________
consensus             GTATGTGAAGTTTGCGGTGGTGCTACTTGGTGCGGCAATGCAAGTGCCAGTTGCTGCCCG
 
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JMSF038L23+           TGCAATTCACAAGGGCTATCACTCCTTTTGGTATCGGAAGCAGGTTGAGACGCTCTCTCC
                      ____________________________________________________________
consensus             TGCAATTCACAAGGGCTATCACTCCTTTTGGTATCGGAAGCAGGTTGAGACGCTCTCTCC
 
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JMSF038L23+           TCATTCTGCTGAGAATTGTTAGCTGAACCCGATTCCTTTTGTGCAAGCTGAAGCTTCGCC
JMFF044H10+                 TGCTGAGAATTGTTAGCTGAACCCGATTCCTNTTGTGCAAGCTGAAGCTTCGCC
JMSF024K20+                 TGCTGAGAATTGTTAGCTGAACCCGATTCCTTTTGTGCAAGCTGAAGCTTCGCC
                      ____________________________________________________________
consensus             TCATTCTGCTGAGAATTGTTAGCTGAACCCGATTCCTTTTGTGCAAGCTGAAGCTTCGCC
 
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JMSF038L23+           AGTTCCTTCTGGGCATCAGCAAGTTCTTGCTTATCTCTCAGGATTTGTACAGACCTGTGG
JMFF044H10+           AGTTCCTTCTGGGCATCAGCAAGTTCTTGCTTATCTCTCAGGATTTGTACAGACCTGTGG
JMSF024K20+           AGTTCCTTCTGGGCATCAGCAAGTTCTTGCTTATCTCTCAGGATTTGTACAGACCTGTGG
                      ____________________________________________________________
consensus             AGTTCCTTCTGGGCATCAGCAAGTTCTTGCTTATCTCTCAGGATTTGTACAGACCTGTGG
 
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JMSF038L23+           ACCTCCTGGAGATGTTTCTCAAGAGATTTGAGTTTGGAATCTGTTTCTCCATGATCATGA
JMFF044H10+           ACCTCCTGGAGATGTTTCTCAAGAGATTTGAGTTTGGAATCTGTTTCTCCATGATCATGA
JMFF018G02+                CTGGAGATGTTTCTCAAGAGATTTGAGTTTGGAATCTGTTTCTCCATGATCATGA
JMSF024K20+           ACCTCCTGGAGATGTTTCTCAAGAGATTTGAGTTTGGAATCTGTTTCTCCATGATCATGA
                      ____________________________________________________________
consensus             ACCTCCTGGAGATGTTTCTCAAGAGATTTGAGTTTGGAATCTGTTTCTCCATGATCATGA
 
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JMSF038L23+           ACCAAATCAGAACGCATTTCTCCAATGGATTTATCAAGATTGTAACAATATAATTCCAAC
JMFF044H10+           ACCAAATCAGAACGCATTTCTCCAATGGATTTATCAAGATTGTAACAATATAATTCCAAC
JMFF018G02+           ACCAAATCAGAACGCATTTCTCCAATGGATTTATCAAGATTGTAACAATATAATTCCAAC
JMSF024K20+           ACCAAATCAGAACGCATTTCTCCAATGGATTTATCAAGATTGTAACAATATAATTCCAAC
JMSF049B10+                                CCAATGGATTTATCAAGATTGTAACAATATAATTCCAAC
                      ____________________________________________________________
consensus             ACCAAATCAGAACGCATTTCTCCAATGGATTTATCAAGATTGTAACAATATAATTCCAAC
 
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JMSF038L23+           TGAGATAGGCGTGAACTAAGC                                       
JMFF044H10+           TGAGATAGGCGTGAACTAAGCCCCTCGAGGAAACGCATGAGATTGTCCGCATACTTCTTC
JMFF018G02+           TGAGATAGGCGTGAACTAAGCCCCTCGAGGAAACGCATGAGATTGTCCGCATACTTCTTC
JMSF024K20+           TGAGATAGGCGTGAACTAAGCCCCTCGAGGAAACGCATGAGATTGTCCGCATACTTCTTC
JMSF018K17+                                          AACGCATGAGATNGTCCGCATACTTCTTC
JMSF049B10+           TGAGATAGGCGTGAACTAAGCCCCTCGAGGAAACGCATGAGATTGTCCGCATACTTCTTC
                      ____________________________________________________________
consensus             TGAGATAGGCGTGAACTAAGCCCCTCGAGGAAACGCATGAGATTGTCCGCATACTTCTTC
 
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JMFF044H10+           ATACTCTTCTCAACAGCATCAATAACATCTTGATTAAATGAAGAATCTTCGGGGGGAATG
JMFF018G02+           ATACTCTTCTCAACAGCATCAATAACATCTTGATTAAATGAAGAATCTTCGGGGGGAATG
JMSF024K20+           ATACTCTTCTCAACAGCATCAATAACATCTTGATTAAATGAAGAATCTTCGGGGGGAATG
JMSF018K17+           ATACTCTTCTCAACAGCATCAATAACATCTTGATTAAATGAAGAATCTTCGGGGGGAATG
JMSF049B10+           ATACTCTTCTCAACAGCATCAATAACATCTTGATTAAATGAAGAATCTTCGGGGGGAATG
                      ____________________________________________________________
consensus             ATACTCTTCTCAACAGCATCAATAACATCTTGATTAAATGAAGAATCTTCGGGGGGAATG
 
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JMFF044H10+           TAAGCCGAAGTAGGCATCATAGATGATCTCGTCATTCTGCTTTTGTGGAACTCCT     
JMFF018G02+           TAAGCCGAAGTAGGCATCATAGATGATCTCGTCATTCTGCTTTTGTGGAACTCCT     
JMSF024K20+           TAAGCCGAAGTAGGCATCATAGATGATCTCGTCATTCTGCTTTTGTGGAACTCCT     
JMSF018K17+           TAAGCCGAAGTAGGCATCATAGATGATCTCGTCATTCTGCTTTTGTGGAACTCCTGCTCA
JMSF049B10+           TAAGCCGAAGTAGGCATCATAGATGATCTCGTCATTCTGCTTTTGTGGAACTCCTGCTCA
                      ____________________________________________________________
consensus             TAAGCCGAAGTAGGCATCATAGATGATCTCGTCATTCTGCTTTTGTGGAACTCCTGCTCA
 
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JMSF018K17+           ATACAAAGTTTGGAACTGAGATTAAATTTGATCCCTCAAATTCCTACATCTTTAACCCCT
JMSF049B10+           ATACAAAGTTTGGAACTGAGATTAAATTTGATCCCTCAAATTCCTACATCTTTAACCCCT
                      ____________________________________________________________
consensus             ATACAAAGTTTGGAACTGAGATTAAATTTGATCCCTCAAATTCCTACATCTTTAACCCCT
 
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JMSF018K17+           CAACCCCACAAATACCTCAAGAGCGCAGTCAATTTGTCAAATGCAAAAGCAAAATCAATG
JMSF049B10+           CAACCCCACAAATACCTCAAGAGCGCAGTCAATTTGTCAAATGCAAAAGCAAAATCAATG
                      ____________________________________________________________
consensus             CAACCCCACAAATACCTCAAGAGCGCAGTCAATTTGTCAAATGCAAAAGCAAAATCAATG
 
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JMSF018K17+           TTACATATCCAATCTCTTTAGAGTTCATCACTTGTAACACTCATCATGAAACTTTCTATG
JMSF049B10+           TTACATATCCAATCTCTTTAGAGTTCATCACTTGTAACACTCATCATGAAACTTTCTATG
                      ____________________________________________________________
consensus             TTACATATCCAATCTCTTTAGAGTTCATCACTTGTAACACTCATCATGAAACTTTCTATG
 
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JMSF018K17+           ACAGAATACATTCAACATTGGATGATATTGGCAATTTGGCATCATTTTACAGGTAAATAG
JMSF049B10+           ACAGAATACATTCAACATTGGATGATATTGGCAATTTGGCATCATTTTACAGGTAAATAG
                      ____________________________________________________________
consensus             ACAGAATACATTCAACATTGGATGATATTGGCAATTTGGCATCATTTTACAGGTAAATAG
 
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JMSF018K17+           CACAGATATAAAGCTTAGTAATATAAAAAAGATGTCATAACTCATAACATAATCACTTCA
JMSF049B10+           CACAGATATAAAGCTTAGTAATATAAAAAAGATGTCATAACTCATAACATAATCACTTCA
                      ____________________________________________________________
consensus             CACAGATATAAAGCTTAGTAATATAAAAAAGATGTCATAACTCATAACATAATCACTTCA
 
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JMSF018K17+           TGATAATTTCTAGTAGAATTAAAATATTCAGTATGGCACAGAGTATAAACTGGATAACTT
JMSF049B10+           TGATAATTTCTAGTAGAATTAAAATATTCAGTATGGCACAGAGTATAAACTGGATAACTT
                      ____________________________________________________________
consensus             TGATAATTTCTAGTAGAATTAAAATATTCAGTATGGCACAGAGTATAAACTGGATAACTT
 
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JMSF018K17+           ATCTGAATAACTATCTGAAAGCACATATTGATCATAGAATGACTTATGGAATTTCAAAAA
JMSF049B10+           ATCTGAATAACTATCTGAAAGCACATATTGATCATAGAATGACTTATGGAATTTCAAAAA
                      ____________________________________________________________
consensus             ATCTGAATAACTATCTGAAAGCACATATTGATCATAGAATGACTTATGGAATTTCAAAAA
 
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JMSF018K17+           CTT                                                         
JMSF049B10+           CTTGCCTTAACAAAATAGGCTCATAGTTTATATTATGACATGTTTAGAAAAATATGGAAC
                      ____________________________________________________________
consensus             CTTGCCTTAACAAAATAGGCTCATAGTTTATATTATGACATGTTTAGAAAAATATGGAAC