| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF030A13 | Sequence | 299 | 003887 (8) | 385 | 004084 (7) | ||||||
| JMFF040A20 | Sequence | 471 | 003887 (8) | 713 | 004084 (7) | ||||||
| JMFF047G24 | Sequence | 376 | 003887 (8) | 295 | 004084 (7) | ||||||
| JMFS082A10 | Sequence | 617 | 003887 (8) | ref|XP_006358519.1| | 5e-10 | PREDICTED: transcription factor PIF3-like [Solanum tuberosum] | |||||
| JMFS082B06 | Sequence | 627 | 003887 (8) | ref|XP_006358519.1| | 5e-16 | PREDICTED: transcription factor PIF3-like [Solanum tuberosum] | |||||
| JMSF012E08 | Sequence | 291 | 003887 (8) | 747 | 004084 (7) | emb|CDP15171.1| | 3e-23 | unnamed protein product [Coffea canephora] | |||
| JMSF029C05 | Sequence | 655 | 003887 (8) | ref|XP_006358519.1| | 9e-14 | PREDICTED: transcription factor PIF3-like [Solanum tuberosum] | 644 | 004084 (7) | emb|CDP15171.1| | 2e-17 | unnamed protein product [Coffea canephora] |
| JMSF048I11 | Sequence | 636 | 003887 (8) | ref|XP_006358519.1| | 6e-09 | PREDICTED: transcription factor PIF3-like [Solanum tuberosum] | 653 | 004084 (7) | emb|CDP15171.1| | 2e-17 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFF030A13+ AT
____________________________________________________________
consensus AT
. : . : . : . : . : . :
JMFF030A13+ CCCAGGGATGGAANTGATGGGTGGTGAGCTTTATAAGNCCANGAAGGGAACAGCCCAAAT
JMFS082B06+ CCCAAAT
____________________________________________________________
consensus CCCAGGGATGGAANTGATGGGTGGTGAGCTTTATAAGNCCANGAAGGGAACAGCCCAAAT
. : . : . : . : . : . :
JMFF030A13+ CTATTATCATTTCTCGGTGATGAATTATTCACTGCCATCAGATTAGAACCATCTGTCTTA
JMFS082B06+ CTATTATCATTTCTCGGTGATGAATTATTCACTGCCATCAGATTAGAACCATCTGTCTTA
____________________________________________________________
consensus CTATTATCATTTCTCGGTGATGAATTATTCACTGCCATCAGATTAGAACCATCTGTCTTA
. : . : . : . : . : . :
JMFF030A13+ TCCATCGAAACGAAATTATTTTGTGCAGGAAGTTCGTTTGNTGACAGACCAGATGCTTCA
JMFS082B06+ TCCATCGAAACGAAATTATTTTGTGCAGGAAGTTCGTTTGCTGACAGACCAGATGCTTCA
____________________________________________________________
consensus TCCATCGAAACGAAATTATTTTGTGCAGGAAGTTCGTTTGCTGACAGACCAGATGCTTCA
. : . : . : . : . : . :
JMFF030A13+ GGTANTACTCCAGAACTATATTCATACTGCAGACTATTGTTATTTAGCGAGTAATTTAAC
JMFS082B06+ GGTACTACTCCAGAACTATATTCATACTGCAGACTATTGTTATTTAGCGAGTAATTTAAC
JMSF029C05+ TGCAGACTATTGNTATTTAGCGAGTAATTTAAC
____________________________________________________________
consensus GGTACTACTCCAGAACTATATTCATACTGCAGACTATTGTTATTTAGCGAGTAATTTAAC
. : . : . : . : . : . :
JMFF030A13+ CAAGGCACAATCTCGTCATCCTGGCTCAAATCCATTTCATTGGTGGGTACA
JMFS082B06+ CAAGGCACAATCTCGTCATCCTGGCTCAAATCCATTTCATTGGTGGGTACAGATAACGCC
JMSF029C05+ CAAGGCACAATCTCGTCATCCNGGCTCAAATCCATTTCATTGGTGGGTACAGATAACGCC
JMFS082A10+ CGTCATCCTGGCTCAAATCCATTTCATTGGTGGGTACAGATAACGCC
JMSF048I11+ GGCTCAAATCCATTTCATTGGTGGGTACAGATAACGCC
____________________________________________________________
consensus CAAGGCACAATCTCGTCATCCTGGCTCAAATCCATTTCATTGGTGGGTACAGATAACGCC
. : . : . : . : . : . :
JMFS082B06+ ATTTCATCCATTAAAAACGCCTTTCCTCGGATCCCCCGGGAGGAGGGATTTTCTTTAGGC
JMSF029C05+ ATTTCATCCATTAAAAACTCCTTTCCTCGGATCCCCCGGGAGGAGGGATTTTCTTTAGGC
JMFS082A10+ ATTTCATCCATTAAAAACGCCTTTCCTCGGATCCCCCGGGAGGAGGGATTTTCTTTAGGC
JMSF048I11+ ATTTCATCCATTAAAAACGCCTTTCCTCGGATCCCCCGGGAGGAGGGATTTTCTTTAGGC
____________________________________________________________
consensus ATTTCATCCATTAAAAACGCCTTTCCTCGGATCCCCCGGGAGGAGGGATTTTCTTTAGGC
. : . : . : . : . : . :
JMFS082B06+ TTGTCTCGAATCACGGGCATTTCCGAGGATAGATTGTTAGAAGTAGGATTCCTCTTACCT
JMSF029C05+ TTGTCTCGAATCACGGGCATTTCCGAGGATAGATTGTTAGAAGTAGGATTCCTCTTACCT
JMFF040A20+ CGAATCACGGGCATTTCCGAGGATAGATTGTTAGAAGTAGGATTCCTCTTACCT
JMFS082A10+ TTGTCTCGAATCACGGGCATTTCCGAGGATAGATTGTTAGAAGTAGGATTCCTCTTACCT
JMSF048I11+ TTGTCTCGAATCACGGGCATTTCCGAGGATAGATTGTTAGAAGTAGGATTCCTCTTACCT
____________________________________________________________
consensus TTGTCTCGAATCACGGGCATTTCCGAGGATAGATTGTTAGAAGTAGGATTCCTCTTACCT
. : . : . : . : . : . :
JMFS082B06+ CTGCTCGACTGACCTTGCATAACAATCTGGCCATTTTCCCATACTAGCTCAACCACTTCA
JMSF029C05+ CTGCTCGACTGACCTTGCATAACAATCTGGCCATTTTCCCATACTAGCTCAACCACTTCA
JMFF040A20+ CTGCTCGACTGACCTTGCATAACAATCTGGCCATTTTCCCATACTAGCTCAACCACTTCA
JMFS082A10+ CTGCTCGACTGACCTTGCATAACAATCTGGCCATTTTCCCATACTAGCTCAACCACTTCA
JMSF048I11+ CTGCTCGACTGACCTTGCATAACAATCTGGCCATTTTCCCATACTAGCTCAACCACTTCA
____________________________________________________________
consensus CTGCTCGACTGACCTTGCATAACAATCTGGCCATTTTCCCATACTAGCTCAACCACTTCA
. : . : . : . : . : . :
JMFS082B06+ TTTTCTAAAAAATCGGGCGAAGATGAAGCTGTTTTTGGCTCCCCAAACTCAAGATTATGC
JMSF029C05+ TTTTCTAAAAAATCGGGCGAAGATGAAGCTGTTTTTGGCTCCCCAAACTCAAGATTATGC
JMFF040A20+ TTTTCTAAAAAATCGGGCGAAGATGAAGCTGTTTTTGGCTCCCCAAACTCAAGATTATGC
JMFS082A10+ TTTTCTAAAAAATCGGGCGAAGATGAAGCTGTTTTTGGCTCCCCAAACTCAAGATTATGC
JMFF047G24+ CAAGATTATGC
JMSF048I11+ TTTTCTAAAAAATCGGGCGAAGATGAAGCTGTTTTTGGCTCCCCAAACTCAAGATTATGC
____________________________________________________________
consensus TTTTCTAAAAAATCGGGCGAAGATGAAGCTGTTTTTGGCTCCCCAAACTCAAGATTATGC
. : . : . : . : . : . :
JMFS082B06+ AACTTCAAAAACTCAGAGAGAGGCATGGTGGAAAGGTGAATAATCACTGCACAAAACTTC
JMSF029C05+ AACTTCAAAAACTCAGAGAGAGGCATGGTGGAAAGGTGAATAATCACTGCACAAAACTTC
JMFF040A20+ AACTTCAAAAACTCAGAGAGAGGCATGGTGGAAAGGTGAATAATCACTGCACAAAACTTC
JMFS082A10+ AACTTCAAAAACTCAGAGAGAGGCATGGTGGAAAGGTGAATAATCACTGCACAAAACTTC
JMFF047G24+ ACTTTCAAAAACTCAGAGAGAGGCATGGTGGAAGGGTGAATAATCACTGCACAAAACTTC
JMSF048I11+ AACTTCAAAAACTCAGAGAGAGGCATGGTGGAAAGGTGAATAATCACTGCACAAAACTTC
____________________________________________________________
consensus AACTTCAAAAACTCAGAGAGAGGCATGGTGGAAAGGTGAATAATCACTGCACAAAACTTC
. : . : . : . : . : . :
JMFS082B06+ CCTTCACTTCAGCCATTATTTGCTGTCTTCTTCAATGCTATCTTTTCTTTCTTTCTAATA
JMSF029C05+ CCTTCACTTCAGCCATTATTNGCTGTCTTCTTCAATGCTATCTTTTCTTTCTTTCTAATA
JMFF040A20+ CCTTCACTTCAGCCATTATTTGCTGTCTTCTTCAATGCTATCTTTTCTTTCTTTCTAATA
JMFS082A10+ CCTTCACTTCAGCCATTATTTGCTGTCTTCTTCAATGCTATCTTTTCTTTCTTTCTAATA
JMSF012E08+ CAGCCATTATTTGCTGTCTTCTTCAATGCTATCTTTTCTTTCTTTCTAATA
JMFF047G24+ CCTTCACTTCAGCCATTATTTGCTGTCTTCTTCAATGCTATCTTTTCTTTCTTTCTAATA
JMSF048I11+ CCTTCACTTCAGCCATTATTTGCTGTCTTCTTCAATGCTATCTTTTCTTTCTTTCTAATA
____________________________________________________________
consensus CCTTCACTTCAGCCATTATTTGCTGTCTTCTTCAATGCTATCTTTTCTTTCTTTCTAATA
. : . : . : . : . : . :
JMFS082B06+ ATAGCT
JMSF029C05+ ATAGCTCTTAAACATCATCAAAAAAGCAACTCAAGCTCCAATACCACCTCCAGTAGATGC
JMFF040A20+ ATAGCTCTTAAACATCATCAAAAAAGCAACTCAAGCTCCAATACCACCTCCAGTAGATGC
JMFS082A10+ ATAGCTCTTAAACATCATCAAAAAAGCAACTCAAGCTCCAATACCACCTCCAGTAGATGC
JMSF012E08+ ATAGCTCTTAAACATCATCAAAAAAGCAACTCAAGCTCCAATACCACCTCCAGTAGATGC
JMFF047G24+ ATAGCTCTTAAACATCATCAAAAAAGCAACTCAAGCTCCAATACCACCTCCAGTAGATGC
JMSF048I11+ ATAGCTCTTAAACATCATCAAAAAAGCAACTCAAGCTCCAATACCACCTCCAGTAGATGC
____________________________________________________________
consensus ATAGCTCTTAAACATCATCAAAAAAGCAACTCAAGCTCCAATACCACCTCCAGTAGATGC
. : . : . : . : . : . :
JMSF029C05+ AATCTTTTCAAGATTTCCACTGCACTGTATCAGTAATAATTTTTTATTTTATTTTATTAT
JMFF040A20+ AATCTTTTCAAGATTTCCACTGCACTGTATCAGTAATAATTTTTTATTTTATTTTATTAT
JMFS082A10+ AATCTTTTCAAGATTTCCACTGCACTGTATCAGTAATAATTTTTTATTTTATTTTATTAT
JMSF012E08+ AATCTTTTCAAGATTTCCACTGCACTGTATCAGTAATAATTTTTTATTTTATTTTATTAT
JMFF047G24+ AATCTTTTCAAGATTTCCACTGCACTGTATCAGTAATAATTTTTTATTTTATTTTATTAT
JMSF048I11+ AATCTTTTCAAGATTTCCACTGCACTGTATCAGTAATAATTTTTTATTTTATTTTATTAT
____________________________________________________________
consensus AATCTTTTCAAGATTTCCACTGCACTGTATCAGTAATAATTTTTTATTTTATTTTATTAT
. : . : . : . : . : . :
JMSF029C05+ TATACTAATTATTATTTGAAATTCACCAACAACAAGTGGCATTCCACATGTTTTTCTAGC
JMFF040A20+ TATACTAATTATTATTTGAAATTCACCAACAACAAGTGGCATTCCACATGTTTTTCT
JMFS082A10+ TATACTAATTATTATTTGAAATTCACCAACAACAAGTGGCATTCCACATGTTTTTCTAGC
JMSF012E08+ TATACTAATTATTATTTGAAATTCACCAACAACAAGTGGCATTCCACATGTTTTTCTAGC
JMFF047G24+ TATACTAATTATTATTTGAAATTCACCAACAACAAGTGGCATTCCACATGTTTTTCTAGC
JMSF048I11+ TATACTAATTATTATTTGAAATTCACCAACAACAAGTGGCATTCCACATG--TTTCTAGC
____________________________________________________________
consensus TATACTAATTATTATTTGAAATTCACCAACAACAAGTGGCATTCCACATGTTTTTCTAGC
. : . : . : . : . : . :
JMSF029C05+ TTTCCCAAAAAAGAGGAGTGC
JMFS082A10+ TTTCCCAAAAAAGAGGAGTGCAAGTTTTAG
JMSF012E08+ TTTCCCAAAAAAGAGGAGTGCAAGTTTTAGAGCTCCAAGAAGAGAAGAAAAAAATATGT
JMFF047G24+ TTTCCCAAAAAAGAGGAGTGCAAGTTTTAGAGCTCCAAGAAGAGAAGAAAAAAATATGT
JMSF048I11+ TTTCCCAAAAAAGAGGAGTGCAAGTTTTAGAGCTCCAAGAAGAGAAGAAAAAAATATGCC
____________________________________________________________
consensus TTTCCCAAAAAAGAGGAGTGCAAGTTTTAGAGCTCCAAGAAGAGAAGAAAAAAATATGTC