Contig 003865:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF009A16+                                                                  TCAA
                      ____________________________________________________________
consensus                                                                     TCAA
 
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rJMSF009A16+          GTATTAGTCCAGGAGCCAGAACTTGCGCGAACAGAGGTTGTCAAAAGAATCTGGGCCTAT
                      ____________________________________________________________
consensus             GTATTAGTCCAGGAGCCAGAACTTGCGCGAACAGAGGTTGTCAAAAGAATCTGGGCCTAT
 
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rJMSF009A16+          ATCCGGGAGAATAATTTGCAAGATCCAAAGAACAAGAAAAGAATTATATGTGATGAAACT
rJMFF038L08+            CCGGGAGAATAATTTGCAAGATCCAAAGACCAAGAAAAGAATTATATGTGATGAAACT
                      ____________________________________________________________
consensus             ATCCGGGAGAATAATTTGCAAGATCCAAAGACCAAGAAAAGAATTATATGTGATGAAACT
 
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rJMSF009A16+          TTGTTGGGGATTTTTCGTGTCAAGACCATTGACATGTTTCGGATGAATCAGACACTTTCA
rJMFF038L08+          TTGTTGGGGATTTTTCGTGTCAAGACCATTGACATGTTTCGGATGAATCAGACACTTTCA
                      ____________________________________________________________
consensus             TTGTTGGGGATTTTTCGTGTCAAGACCATTGACATGTTTCGGATGAATCAGACACTTTCA
 
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rJMSF009A16+          AAGCATATATGGCCTATTGAAAAAGAAGATGTCACTCTGGTCAAATCCACACCAAAGGAA
rJMFF038L08+          AAGCATATATGGCCTATTGAAAAAGAAGATGTCACTCTGGTCAAATCCACACCAAAGGAA
                      ____________________________________________________________
consensus             AAGCATATATGGCCTATTGAAAAAGAAGATGTCACTCTGGTCAAATCCACACCAAAGGAA
 
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rJMSF009A16+          AGGCAACGGAAAAAGGGCAGAGACGA---------AGATTCAGATTCAGATTCAGATTTT
rJMFF038L08+          AGGCAACGGAAAAAGGGCAGAGACGAAGTTTATACAGATTCAGATTCAGATTCAGATTTT
                      ____________________________________________________________
consensus             AGGCAACGGAAAAAGGGCAGAGACGAAGTTTATACAGATTCAGATTCAGATTCAGATTTT
 
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rJMSF009A16+          GAGCCAAAGCAGGAAGAGAAACGACAGAGAGGACTGAAAGGTGGTGGCACCGGTTTCCTT
rJMFF038L08+          GAGCCAAAGCAGGAAGAGAAACGACAGAGAGGACTGAAAGGTGGTGGCACCGGTTTCCTT
                      ____________________________________________________________
consensus             GAGCCAAAGCAGGAAGAGAAACGACAGAGAGGACTGAAAGGTGGTGGCACCGGTTTCCTT
 
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rJMSF009A16+          GCTCCAATTCAACTCTCAGACTCTCTGGTAAAATTCTTTGGTACTGGTGAAAATGCACTA
rJMFF038L08+          GCTCCAATTCAACTCTCAGACTCTCTGGTAAAATTCTTTGGTACTGGTGAAAATGCACTA
                      ____________________________________________________________
consensus             GCTCCAATTCAACTCTCAGACTCTCTGGTAAAATTCTTTGGTACTGGTGAAAATGCACTA
 
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rJMSF009A16+          TCACGGGGAGATGTGGTGAAGAGAATGTGGAAATACATTAAGGAAAATGAACTGCAGGAC
rJMFF038L08+          TCACGGGGAGATGTGGTGAAGAGAATGTGGAAATACATTAAGGAAAATGAACTGCAGGAC
                      ____________________________________________________________
consensus             TCACGGGGAGATGTGGTGAAGAGAATGTGGAAATACATTAAGGAAAATGAACTGCAGGAC
 
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rJMSF009A16+          CCATCTAATAAGAGGAGGGTCATTTGTGATGACAAGTTAAGAGAACTCCTCGAGGTTGAT
rJMFF038L08+          CCATCTAATAAGAGGAGGGTCATTTGTGATGACAAGTTAAGAGAACTCCTCGAGGTTGAT
rJMSF045I03+                                                            CGAGGTTGAT
JMSF045I03-                                                             CGAGGTTGAT
                      ____________________________________________________________
consensus             CCATCTAATAAGAGGAGGGTCATTTGTGATGACAAGTTAAGAGAACTCCTCGAGGTTGAT
 
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rJMSF009A16+          TCTTTTGAAGGCTTCACGATGACTAAGCTCTTGACTGCTCATTTTATAAAAACAGCAGGG
rJMFF038L08+          TCTTTTGAAGGCTTCACGATGACTAAGCTCTTGACTGCTCATTTTATAAAAACAGCAGGG
rJMSF045I03+          TCTTTTGAAGGCTTCACGATGACTAAGCTCTTGACTGCTCATTTTATAAAAACAGCAGGG
JMSF045I03-           TCTTTTGAAGGCTTCACGATGACTAAGCTCTTGACTGCTCATTTTATAAAAACAGCAGGG
                      ____________________________________________________________
consensus             TCTTTTGAAGGCTTCACGATGACTAAGCTCTTGACTGCTCATTTTATAAAAACAGCAGGG
 
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rJMSF009A16+          TGATGTTATCTTACATTTTTAGCAACGTGAAAGTGTTTGTTGTCTTGCTTTTCATTCCCC
rJMFF038L08+          TGATGTTATCTTACATTTTTAGCAACGTGAAAGTGTTTGTTGTCTTGCTTTTCATTCCCC
rJMSF045I03+          TGATGTTATCTTACATTTTTAGCAACGTGAAAGTGTTTGTTGTCTTGCTTTTCATTCCCC
JMSF045I03-           TGATGTTATCTTACATTTTTAGCAACGTGAAAGTGTTTGTTGTCTTGCTTTTCATTCCCC
                      ____________________________________________________________
consensus             TGATGTTATCTTACATTTTTAGCAACGTGAAAGTGTTTGTTGTCTTGCTTTTCATTCCCC
 
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rJMSF009A16+          TTGCCTAGAATCTCCTTATAGAATTTCTTGACCTCTATAAATATGTAGCAAGCTACGGAA
rJMFF038L08+          TTGCCTAGAATCTCCTTATAGAATTTCTTGACCTCTATAAATATGTAGCAAGCTACGGAA
rJMSF045I03+          TTGCCTAGAATCTCCTTATAGAATTTCTTGACCTCTATAAATATGTAGCAAGCTACGGAA
rJMSF047I03+                                     TTGACCTCTATAAATATGNAGCAAGNTACGGAA
JMSF045I03-           TTGCCTAGAATCTCCTTATAGAATTTCTTGACCTCTATAAATATGTAGCAAGCTACGGAA
                      ____________________________________________________________
consensus             TTGCCTAGAATCTCCTTATAGAATTTCTTGACCTCTATAAATATGTAGCAAGCTACGGAA
 
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rJMSF009A16+          TCAAAAACAGAATATTAGGCTACTGAAGATTCTAAACATT                    
rJMFF038L08+          TCAAAAACAGAATATTAGGCTACTGAAGATTCTAAACATTTTATTTAACACGCCCAAATC
rJMSF045I03+          TCAAAAACAGAATATTAGGCTACTGAAGATTCTAAACATTTTATTTAACACGCCCAAATC
rJMSF047I03+          TCAAAAACAGAATANTAGGNTACTGAAGATTCNNANCATTTTATTTAACACGCCCAAATC
JMSF045I03-           TCAAAAACAGAATATTAGGCTACTGAAGATTCTAAACATTTTATTTAACACGCCCAAATC
                      ____________________________________________________________
consensus             TCAAAAACAGAATATTAGGCTACTGAAGATTCTAAACATTTTATTTAACACGCCCAAATC
 
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rJMFF038L08+          C                                                           
rJMSF045I03+          CTTCAAAATGGTTTGGAATTTTCACCTACCACCAAAATCTTCATTTTTGTCTGTTTCCTT
rJMSF047I03+          CTTCAAAATNGTTTGGAATTTTCACCTACCACCAAAATCNTCATTTTTGTC         
JMSF045I03-           CTTCAAAATGGTTTGGAATTTTCACCTACCACCAAAATCTTCATTTTTGTCTGTTTCCTT
                      ____________________________________________________________
consensus             CTTCAAAATGGTTTGGAATTTTCACCTACCACCAAAATCTTCATTTTTGTCTGTTTCCTT
 
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rJMSF045I03+          CTCTACTTTTGGTAGGTGCTCCAGTCACTATATGGTAGGATGGAACTCCTCTATGGCTCT
JMSF045I03-           CTCTACTTTTGGTAGGTGCTCCAGTCACTATATGGTAGGATGGAACTCCTCTATGGCTCT
                      ____________________________________________________________
consensus             CTCTACTTTTGGTAGGTGCTCCAGTCACTATATGGTAGGATGGAACTCCTCTATGGCTCT
 
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rJMSF045I03+          ATTAGTCTAT                                                  
JMSF045I03-           ATTAGTCTATTACATTGTTCTCTTTTGAATGGGAATTACTGGTTCCTTTTAAAAAAAAAA
                      ____________________________________________________________
consensus             ATTAGTCTATTACATTGTTCTCTTTTGAATGGGAATTACTGGTTCCTTTTAAAAAAAAAA