Contig 003849:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS073F11Sequence623003849 (4)ref|XP_009617273.1|3e-108PREDICTED: importin-5-like [Nicotiana tomentosiformis]
JMFS082A07Sequence626003849 (4)ref|XP_009617273.1|3e-94PREDICTED: importin-5-like [Nicotiana tomentosiformis]
JMSF032B16Sequence683003849 (4)ref|XP_009617273.1|6e-102PREDICTED: importin-5-like [Nicotiana tomentosiformis]756023565ref|XP_009757753.1|5e-54PREDICTED: importin-5-like [Nicotiana sylvestris]
JMSF043E20Sequence785003849 (4)ref|XP_009617273.1|1e-123PREDICTED: importin-5-like [Nicotiana tomentosiformis]777024660ref|XP_009757753.1|4e-85PREDICTED: importin-5-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF043E20+                                                                  CTGTC
                      ____________________________________________________________
consensus                                                                    CTGTC
 
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JMSF043E20+           CCGATCAGTCGAGCTCGATAAGCACTGGATGAAATTGATAACAGCGTTCAAAGCCGCAAT
                      ____________________________________________________________
consensus             CCGATCAGTCGAGCTCGATAAGCACTGGATGAAATTGATAACAGCGTTCAAAGCCGCAAT
 
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JMSF032B16+                                                AAGAAAACCGAGTGCAAATCCTT
JMFS073F11+                        CTGGGAGAGTTATTCAGTGTCTGCAAGAAAACCGAGTGCAAATCCTT
JMSF043E20+           CCGAACATCCGAACTGGGAGAGTTATTCAGTGTCTGCAAGAAAACCGAGTGCAAATCCTT
                      ____________________________________________________________
consensus             CCGAACATCCGAACTGGGAGAGTTATTCAGTGTCTGCAAGAAAACCGAGTGCAAATCCTT
 
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JMSF032B16+           GATATGAGGCACCAGGATCTCGCCTACGTACTGTGCCAATTGAGCAAAAATCAAGAAGGC
JMFS082A07+                       CAGGATCTCGCCTACGTACTGTGCCAATTGAGCAAAAATCAAGAAGGC
JMFS073F11+           GATATGAGGCACCAGGATCTCGCCTACGTACTGTGCCAATTGAGCAAAAATCAAGAAGGC
JMSF043E20+           GATATGAGGCACCAGGATCTCGCCTACGTACTGTGCCAATTGAGCAAAAATCAAGAAGGC
                      ____________________________________________________________
consensus             GATATGAGGCACCAGGATCTCGCCTACGTACTGTGCCAATTGAGCAAAAATCAAGAAGGC
 
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JMSF032B16+           GGACTCCTGTAGCTTCAGCGAATCAGAAGTAACGCACTGGAACATGAACGGCAGGATTTC
JMFS082A07+           GGACTCCTGTAGCTTCAGCGAATCAGAAGTAACGCACTGGAACATGAACGGCAGGATTTC
JMFS073F11+           GGACTCCTGTAGCTTCAGCGAATCAGAAGTAACGCACTGGAACATGAACGGCAGGATTTC
JMSF043E20+           GGACTCCTGTAGCTTCAGCGAATCAGAAGTAACGCACTGGAACATGAACGGCAGGATTTC
                      ____________________________________________________________
consensus             GGACTCCTGTAGCTTCAGCGAATCAGAAGTAACGCACTGGAACATGAACGGCAGGATTTC
 
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JMSF032B16+           CGGCCATTGATTCTCCGGCAAAATCGAGGAGGCAAGCTCTGAAATCGTGTCACAGAGCTT
JMFS082A07+           CGGCCATTGATTCTCCGGCAAAATCGAGGAGGCAAGCTCTGAAATCGTGTCACAGAGCTT
JMFS073F11+           CGGCCATTGATTCTCCGGCAAAATCGAGGAGGCAAGCTCTGAAATCGTGTCACAGAGCTT
JMSF043E20+           CGGCCATTGATTCTCCGGCAAAATCGAGGAGGCAAGCTCTGAAATCGTGTCACAGAGCTT
                      ____________________________________________________________
consensus             CGGCCATTGATTCTCCGGCAAAATCGAGGAGGCAAGCTCTGAAATCGTGTCACAGAGCTT
 
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JMSF032B16+           CTTGATTATCGTCTTCACCTCCTCGCGCTGGATACACGTTAACAGCACGGATTTGATATC
JMFS082A07+           CTTGATTATCGTCTTCACCTCCTCGCGCTGGATACACGTTAACAGCACGGATTTGATATC
JMFS073F11+           CTTGATTATCGTCTTCACCTCCTCGCGCTGGATACACGTTAACAGCACGGATTTGATATC
JMSF043E20+           CTTGATTATCGTCTTCACCTCCTCGCGCTGGATACACGTTAACAGCACGGATTTGATATC
                      ____________________________________________________________
consensus             CTTGATTATCGTCTTCACCTCCTCGCGCTGGATACACGTTAACAGCACGGATTTGATATC
 
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JMSF032B16+           CGACTGAGTGGAAGCAGCAAGCCGGGGCCAGATATAGGAATCGTCACGGGTCAACAGCTT
JMFS082A07+           CGACTGAGTGGAAGCAGCAAGCCGGGGCCAGATATAGGAATCGTCACGGGTCAACAGCTT
JMFS073F11+           CGACTGAGTGGAAGCAGCAAGCCGGGGCCAGATATAGGAATCGTCACGGGTCAACAGCTT
JMSF043E20+           CGACTGAGTGGAAGCAGCAAGCCGGGGCCAGATATAGGAATCGTCACGGGTCAACAGCTT
                      ____________________________________________________________
consensus             CGACTGAGTGGAAGCAGCAAGCCGGGGCCAGATATAGGAATCGTCACGGGTCAACAGCTT
 
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JMSF032B16+           GCGCAGGAGGATAGCACACATAGCACGCGCCTCCACGTGAACCGATGAAGTGAGAACCTG
JMFS082A07+           GCGCAGGAGGATAGCACACATAGCACGCGCCTCCACGTGAACCGATGAAGTGAGAACCTG
JMFS073F11+           GCGCAGGAGGATAGCACACATAGCACGCGCCTCCACGTGAACCGATGAAGTGAGAACCTG
JMSF043E20+           GCGCAGGAGGATAGCACACATAGCACGCGCCTCCACGTGAACCGATGAAGTGAGAACCTG
                      ____________________________________________________________
consensus             GCGCAGGAGGATAGCACACATAGCACGCGCCTCCACGTGAACCGATGAAGTGAGAACCTG
 
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JMSF032B16+           GGCGAGCTTGAGTGCAAGCGAATTGGGATCGTTCTGCTTAAGGAGGTTGAAGATGGCCTC
JMFS082A07+           GGCGAGCTTGAGTGCAAGCGAATTGGGATCGTTCTGCTTAAGGAGGTTGAAGATGGCCTC
JMFS073F11+           GGCGAGCTTGAGTGCAAGCGAATTGGGATCGTTCTGCTTAAGGAGGTTGAAGATGGCCTC
JMSF043E20+           GGCGAGCTTGAGTGCAAGCGAATTGGGATCGTTCTGCTTAAGGAGGTTGAAGATGGCCTC
                      ____________________________________________________________
consensus             GGCGAGCTTGAGTGCAAGCGAATTGGGATCGTTCTGCTTAAGGAGGTTGAAGATGGCCTC
 
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JMSF032B16+           AGCCTGGGAGCGCTGCTCATTGGCGGAGGACATGAGGTGGGAGATTAGGGTTTCGAATGG
JMFS082A07+           AGCCTGGGAGCGCTGCTCATTGGCGGAGGACATGAGGTGGGAGATTAGGGTTTCGAATGG
JMFS073F11+           AGCCTGGGAGCGCTGCTCATTGGCGGAGGACATGAGGTGGGAGATTAGGGTTTCGAATGG
JMSF043E20+           AGCCTGGGAGCGCTGCTCATTGGCGGAGGACATGAGGTGGGAGATTAGGGTTTCGAATGG
                      ____________________________________________________________
consensus             AGCCTGGGAGCGCTGCTCATTGGCGGAGGACATGAGGTGGGAGATTAGGGTTTCGAATGG
 
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JMSF032B16+           CGCCGGGTCTGAACCCATAATCGCAGCGAGTTGAGCCTGGTTCAACTGAGCCGACTCGCC
JMFS082A07+           CGCCGGGTCTGAACCCATAATCGCAGCGAGTTGAGCCTGGTTCAACTGAGCCGACTCGCC
JMFS073F11+           CGCCGGGTCTGAACCCATAATCGCAGCGAGTTGAGCCTGGTTCAACTGAGCCGACTCGCC
JMSF043E20+           CGCCGGGTCTGAACCCATAATCGCAGCGAGTTGAGCCTGGTTCAACTGAGCCGACTCGCC
                      ____________________________________________________________
consensus             CGCCGGGTCTGAACCCATAATCGCAGCGAGTTGAGCCTGGTTCAACTGAGCCGACTCGCC
 
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JMSF032B16+           CGCCATGATAATTCTTCAAAGAAGATGTGTGAGAGAGAAAGAGAGAGCAGAACAGAGCAG
JMFS082A07+           CGCCATGATAATTCTTCAAAGAAGATGTGTGAGAGAGAAAGAGAGAGCAGAACAGAGCAG
JMFS073F11+           CGCCATGATAATTATTCAAAGAAGATGTGTGAGAGA                        
JMSF043E20+           CGCCATGATAATTCTTCAAAGAAGATGTGTGAGAGAGAAAGAGAGAGCAGAACAGAGCAG
                      ____________________________________________________________
consensus             CGCCATGATAATTCTTCAAAGAAGATGTGTGAGAGAGAAAGAGAGAGCAGAACAGAGCAG
 
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JMSF032B16+           AGAGAGACACTGTGATGATGGCTCTGAGTTTCGGCCTTTTTCTCTCTCACACAAAACA  
JMFS082A07+           AGAGAGACACTGTGATGATGGCTCTGAGTTTCGGCCTT                      
JMSF043E20+           AGAGAGACACTGTGATGATGGCTCTGAGTTTCGGCCTTTTTCTCTCTCACACAAAACACC
                      ____________________________________________________________
consensus             AGAGAGACACTGTGATGATGGCTCTGAGTTTCGGCCTTTTTCTCTCTCACACAAAACACC