| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF001E17 | Sequence | 465 | 003837 (4) | ref|XP_004235299.1| | 2e-18 | PREDICTED: RNA polymerase sigma factor sigA [Solanum lycopersicum] | 767 | 011397 (4) | ref|XP_009771934.1| | 4e-85 | PREDICTED: RNA polymerase sigma factor sigA [Nicotiana sylvestris] |
| JMSF021E12 | Sequence | 703 | 003837 (4) | ref|XP_004235299.1| | 2e-42 | PREDICTED: RNA polymerase sigma factor sigA [Solanum lycopersicum] | 778 | 011397 (4) | ref|XP_009771934.1| | 6e-101 | PREDICTED: RNA polymerase sigma factor sigA [Nicotiana sylvestris] |
| JMSF021E13 | Sequence | 688 | 003837 (4) | ref|XP_004235299.1| | 4e-38 | PREDICTED: RNA polymerase sigma factor sigA [Solanum lycopersicum] | 772 | 011397 (4) | ref|XP_011075762.1| | 4e-100 | PREDICTED: RNA polymerase sigma factor sigA [Sesamum indicum] |
| JMSF042B20 | Sequence | 739 | 003837 (4) | ref|XP_004235299.1| | 8e-46 | PREDICTED: RNA polymerase sigma factor sigA [Solanum lycopersicum] | 709 | 011397 (4) | ref|XP_009771934.1| | 9e-71 | PREDICTED: RNA polymerase sigma factor sigA [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF042B20+ TGGCACATAAGTTATCATC
____________________________________________________________
consensus TGGCACATAAGTTATCATC
. : . : . : . : . : . :
JMSF021E13+ TTCCAGCATAGACTTCTGCANCAGGAGGAGAGCC
JMSF021E12+ AAGATTCCATTGTTTTTCCAGCATAGACTTCTGCANCAGGAGGAGAGCC
JMSF042B20+ TTCTCAGCCGAAAGATTCCATTGTTTTTCCAGCATAGACTTCTGCAACAGGAGGAGAGCC
____________________________________________________________
consensus TTCTCAGCCGAAAGATTCCATTGTTTTTCCAGCATAGACTTCTGCAACAGGAGGAGAGCC
. : . : . : . : . : . :
JMSF021E13+ TCTACATGATCTACCCCATCAGAGCTTTCATTTAGCAACTCAGAGATTCTCTGATCCCAG
JMSF021E12+ TCTACATGATCTACCCCATCAGAGCTTTCATTTAGCAACTCAGAGATTCTCTGATCCCAG
JMSF042B20+ TCTACATGATCTACCCCATCAGAGCTTTCATTTAGCAACTCAGAGATTCTCTGATCCCAG
____________________________________________________________
consensus TCTACATGATCTACCCCATCAGAGCTTTCATTTAGCAACTCAGAGATTCTCTGATCCCAG
. : . : . : . : . : . :
JMSF021E13+ GGCTCCATGTTGGGAGTATCAAGTGCAATGTCAACGTGCTCCTTAAGAGCCTTGATGGAA
JMSF021E12+ GGCTCCATGTTGGGAGTATCAAGTGCAATGTCAACGTGCTCCTTAAGAGCCTTGATGGAA
JMSF042B20+ GGCTCCATGTTGGGAGTATCAAGTGCAATGTCAACGTGCTCCTTAAGAGCCTTGATGGAA
____________________________________________________________
consensus GGCTCCATGTTGGGAGTATCAAGTGCAATGTCAACGTGCTCCTTAAGAGCCTTGATGGAA
. : . : . : . : . : . :
JMSF021E13+ CGGATTCGACGACTGGAAAGAGAACCAGGACTATAGTTGGAGGATTTCTTAGCAGTTATT
JMSF001E17+ GGATTCGACGACTGNAAAGAGAACCAGGACTATAGTTGGAGGATTTCTTAGCAGTTATT
JMSF021E12+ CGGATTCGACGACTGGAAAGAGAACCAGGACTATAGTTGGAGGATTTCTTAGCAGTTATT
JMSF042B20+ CGGATTCGACGACTGGAAAGAGAACCAGGACTATAGTTGGAGGATTTCTTAGCAGTTATT
____________________________________________________________
consensus CGGATTCGACGACTGGAAAGAGAACCAGGACTATAGTTGGAGGATTTCTTAGCAGTTATT
. : . : . : . : . : . :
JMSF021E13+ ACACTCTTTACATAAACAACCTGATTGCACGGAAAGGTGAAATCGCTGCTGCATGACAGC
JMSF001E17+ ACACTCTTTACATAAACAACCTGATTGCACGGAAAGGTGAAATCGCTGCTGCATGACAGC
JMSF021E12+ ACACTCTTTACATAAACAACCTGATTGCACGGAAAGGTGAAATCGCTGCTGCATGACAGC
JMSF042B20+ ACACTCTTTACATAAACAACCTGATTGCACGGAAAGGTGAAATCGCTGCTGCATGACAGC
____________________________________________________________
consensus ACACTCTTTACATAAACAACCTGATTGCACGGAAAGGTGAAATCGCTGCTGCATGACAGC
. : . : . : . : . : . :
JMSF021E13+ TTTTCTGCAACATCAGAATAAGAAAAGGAGGAGGAAAGAAGCCTTTCTCCAGCACCAAGT
JMSF001E17+ TTTTCTGCAACATCAGAATAAGAAAAGGAGGAGGAAAGAAGCCTTTCTCCAGCACCAAGT
JMSF021E12+ TTTTCTGCAACATCAGAATAAGAAAAGGAGGAGGAAAGAAGCCTTTCTCCAGCACCAAGT
JMSF042B20+ TTTTCTGCAACATCAGAATAAGAAAAGGAGGAGGAAAGAAGCCTTTCTCCAGCACCAAGT
____________________________________________________________
consensus TTTTCTGCAACATCAGAATAAGAAAAGGAGGAGGAAAGAAGCCTTTCTCCAGCACCAAGT
. : . : . : . : . : . :
JMSF021E13+ CCAATAGCTGCTGCAGTGACCATCATGAAGGAAGGAAGGCTTTCCCTCGTTGATTGATAC
JMSF001E17+ CCAATAGCTGCTGCAGTGACCATCATGAAGGAAGGAAGGCTTTCCCTCGTTGATTGATAC
JMSF021E12+ CCAATAGCTGCTGCAGTGACCATCATGAAGGAAGGAAGGCTTTCCCTCGTTGATTGATAC
JMSF042B20+ CCAATAGCTGCTGCAGTGACCATCATGAAGGAAGGAAGGCTTTCCCTCGTTGATTGATAC
____________________________________________________________
consensus CCAATAGCTGCTGCAGTGACCATCATGAAGGAAGGAAGGCTTTCCCTCGTTGATTGATAC
. : . : . : . : . : . :
JMSF021E13+ TCAAATACTCAATACCATCACAGAACAGGGCAAGTTAGCTGAACCGCAACTGCACAGCTC
JMSF001E17+ TCAAATACTCAATACCATCACAGAACAGGGCAAGTTAGCTGAACCGCAACTGCACAGCTC
JMSF021E12+ TCAAATACTCAATACCATCACAGAACAGGGCAAGTTAGCTGAACCGCAACTGCACAGCTC
JMSF042B20+ TCAAATACTCAATACCATCACAGAACAGGGCAAGTTAGCTGAACCGCAACTGCACAGCTC
____________________________________________________________
consensus TCAAATACTCAATACCATCACAGAACAGGGCAAGTTAGCTGAACCGCAACTGCACAGCTC
. : . : . : . : . : . :
JMSF021E13+ GACAAGAGCACAACTACCGTATCACCAGTTAGAACGTTCTCTTTGTTTGCCAACAACTAA
JMSF001E17+ GACAAGAGCACAACTACCGTATCACCAGTTAGAACGTTCTCTTTGTTTGCCAACAACTAA
JMSF021E12+ GACAAGAGCACAACTACCGTATCACCAGTTAGAACGTTCTCTTTGTTTGCCAACAACTAA
JMSF042B20+ GACAAGAGCACAACTACCGTATCACCAGTTAGAACGTTCTCTTTGTTTGCCAACAACTAA
____________________________________________________________
consensus GACAAGAGCACAACTACCGTATCACCAGTTAGAACGTTCTCTTTGTTTGCCAACAACTAA
. : . : . : . : . : . :
JMSF021E13+ AGCTTCT
JMSF001E17+ AGCTTCT
JMSF021E12+ AGCTTCT
JMSF042B20+ AGCTTCTGAGTTTTCCGGCGAGAGAGAAAGGGAAAGAACAGTGAACTCCGATGCTTAGTG
____________________________________________________________
consensus AGCTTCTGAGTTTTCCGGCGAGAGAGAAAGGGAAAGAACAGTGAACTCCGATGCTTAGTG
. : . : . : . : . : . :
JMSF042B20+ GCGCAATGGTACTGGTTTTTTGGGTTTTGTAAAAAGAAAATATGTTTTTAATACTATAGT
____________________________________________________________
consensus GCGCAATGGTACTGGTTTTTTGGGTTTTGTAAAAAGAAAATATGTTTTTAATACTATAGT
. : . : . : . : . : . :
JMSF042B20+ ATATTACGGAGTATATTTTATCTGCGAGATTTTCGGATATCGGAGGGAAGAGATAAGCCC
____________________________________________________________
consensus ATATTACGGAGTATATTTTATCTGCGAGATTTTCGGATATCGGAGGGAAGAGATAAGCCC