Contig 003830:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF029B22Sequence602003830 (3)ref|XP_009760261.1|1e-109PREDICTED: 3-ketoacyl-CoA synthase 4 [Nicotiana sylvestris]640011855 (4)emb|CDP07508.1|1e-74unnamed protein product [Coffea canephora]
JMSF035L06Sequence662003830 (3)ref|XP_009760261.1|1e-108PREDICTED: 3-ketoacyl-CoA synthase 4 [Nicotiana sylvestris]652011855 (4)gb|KDO49072.1|1e-70hypothetical protein CISIN_1g010687mg [Citrus sinensis]
JMSF041H03Sequence662003830 (3)ref|XP_009760261.1|2e-109PREDICTED: 3-ketoacyl-CoA synthase 4 [Nicotiana sylvestris]604011855 (4)gb|KDO49072.1|3e-69hypothetical protein CISIN_1g010687mg [Citrus sinensis]

Alignment

This contig is upended


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JMSF035L06+                                                                     CT
JMSF029B22+                                                                     CT
JMSF041H03+                                                                     CT
                      ____________________________________________________________
consensus                                                                       CT
 
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JMSF035L06+           TCCCTGGCGGCCTGCATAGACGGCCGCGGGGGGAGATAGTGCATAGCNTCCGGGACATAA
JMSF029B22+           TCCCTGGCGGCCTGCATAGACGGCCGCGGGGGGAGATAGTGCATAGCCTCCGGGACATAA
JMSF041H03+           TCCCTGGCGGCCTGCATAGACGGCCGCGGGGGGAGATAGTGCATAGCCTCCGGGACATAA
                      ____________________________________________________________
consensus             TCCCTGGCGGCCTGCATAGACGGCCGCGGGGGGAGATAGTGCATAGCCTCCGGGACATAA
 
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JMSF035L06+           GTCTCGTCCCCGAGGCCAGACCGCTCTAAGATCTTACGCTGAAACTCGAGGCTGGACTCA
JMSF029B22+           GTCTCGTCCCCGAGGCCAGACCGCTCTAAGATCTTACGCTGAAACTCGAGGCTGGACTCA
JMSF041H03+           GTCTCGTCCCCGAGGCCAGACCGCTCTAAGATCTTACGCTGAAACTCGAGGCTGGACTCA
                      ____________________________________________________________
consensus             GTCTCGTCCCCGAGGCCAGACCGCTCTAAGATCTTACGCTGAAACTCGAGGCTGGACTCA
 
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JMSF035L06+           TCGAAGTCCCCGGTGCGCCTGGAGTGATCCATAAACCGCTGATACGGAGCCTTGAGGGTA
JMSF029B22+           TCGAAGTCCCCGGTGCGCCTGGAGTGATCCATAAACCGCTGATACGGAGCCTTGAGGGTA
JMSF041H03+           TCGAAGTCCCCGGTGCGCCTGGAGTGATCCATAAACCGCTGATACGGAGCCTTGAGGGTA
                      ____________________________________________________________
consensus             TCGAAGTCCCCGGTGCGCCTGGAGTGATCCATAAACCGCTGATACGGAGCCTTGAGGGTA
 
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JMSF035L06+           TCGGGAGGGCGGTAACAGGCGTAATCAACCAAATAAACCGGGCGCGGCCGGGTCATGATA
JMSF029B22+           TCGGGAGGGCGGTAACAGGCGTAATCAACCAAATAAACCGGGCGCGGCCGGGTCATGATA
JMSF041H03+           TCGGGAGGGCGGTAACAGGCGTAATCAACCAAATAAACCGGGCGCGGCCGGGTCATGATA
                      ____________________________________________________________
consensus             TCGGGAGGGCGGTAACAGGCGTAATCAACCAAATAAACCGGGCGCGGCCGGGTCATGATA
 
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JMSF035L06+           TAAACGGTGGATCCAAAGACGAGAACGGCGGAGCAAATAATCACAGAAACGAGATTGTAC
JMSF029B22+           TAAACGGTGGATCCAAAGACGAGAACGGCGGAGCAAATAATCACAGAAACGAGATTGTAC
JMSF041H03+           TAAACGGTGGATCCAAAGACGAGAACGGCGGAGCAAATAATCACAGAAACGAGATTGTAC
                      ____________________________________________________________
consensus             TAAACGGTGGATCCAAAGACGAGAACGGCGGAGCAAATAATCACAGAAACGAGATTGTAC
 
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JMSF035L06+           TGCAAATGAAGCCACAGCTGGCGAATATCATCGGGATTCATTTGAGAAGCCTCGATTATA
JMSF029B22+           TGCAAATGAAGCCACAGCTGGCGAATATCATCGGGATTCATTTGAGAAGCCTCGATTATA
JMSF041H03+           TGCAAATGAAGCCACAGCTGGCGAATATCATCGGGATTCATTTGAGAAGCCTCGATTATA
                      ____________________________________________________________
consensus             TGCAAATGAAGCCACAGCTGGCGAATATCATCGGGATTCATTTGAGAAGCCTCGATTATA
 
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JMSF035L06+           ATCACGGCCATTACAGGAATCAGACACAGAGTTAACAAATGAGAAATCAAGTAATGGTAA
JMSF029B22+           ATCACGGCCATTACAGGAATCAGACACAGAGTTAACAAATGAGAAATCAAGTAATGGTAA
JMSF041H03+           ATCACGGCCATTACAGGAATCAGACACAGAGTTAACAAATGAGAAATCAAGTAATGGTAA
                      ____________________________________________________________
consensus             ATCACGGCCATTACAGGAATCAGACACAGAGTTAACAAATGAGAAATCAAGTAATGGTAA
 
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JMSF035L06+           CCTAGTTTCACGTACTTCAAGTTGACGCTCTGGAGGAAATCCGGCAACCTGCGGCTCTGC
JMSF029B22+           CCTAGTTTCACGTACTTCAAGTTGACGCTCTGGAGGAAATCCGGCAACCTGCGGCTCTGC
JMSF041H03+           CCTAGTTTCACGTACTTCAAGTTGACGCTCTGGAGGAAATCCGGCAACCTGCGGCTCTGC
                      ____________________________________________________________
consensus             CCTAGTTTCACGTACTTCAAGTTGACGCTCTGGAGGAAATCCGGCAACCTGCGGCTCTGC
 
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JMSF035L06+           CGGATCTGCACTCCCACCGTCGCCGCTCCCCGGCCGCTGTTGACTTCCGCGCCGCCGTCC
JMSF029B22+           CGGATCTGCACTCCCACCGTCGCCGCTCCCCGGTCGCTGTTGACTTCCGCGCCGCCGTCC
JMSF041H03+           CGGATCTGCACTCCCACCGTCGCCGCTCCCCGGCCGCTGTTGACTTCCGCGCCGCCGTCC
                      ____________________________________________________________
consensus             CGGATCTGCACTCCCACCGTCGCCGCTCCCCGGCCGCTGTTGACTTCCGCGCCGCCGTCC
 
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JMSF035L06+           ATGGCGGTTTGTGGACCTCGAGCCTTGGATTAGTCGTTCAAATGCGGAGGAGCGTTCTTA
JMSF029B22+           ATGGCGGTTTGTGGACCTCGAGCCTTGGATTAGTCGTTCAAATGCGGAGGAGCGTTCTT 
JMSF041H03+           ATGGCGGTTTGTGGACCTCGAGCCTTGGATTAGTCGTTCAAATGCGGAGGAGCGTTCTTA
                      ____________________________________________________________
consensus             ATGGCGGTTTGTGGACCTCGAGCCTTGGATTAGTCGTTCAAATGCGGAGGAGCGTTCTTA
 
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JMSF035L06+           GGGAGAAGAATGATGCCGCCGCAGACAATTATGCAAAGCACTATATATGCAAGTGAGCTC
JMSF041H03+           GGGAGAAGAATGATGCCGCCGCAGACAATTATGCAAAGCACTATATATGCAAGTGAGCTC
                      ____________________________________________________________
consensus             GGGAGAAGAATGATGCCGCCGCAGACAATTATGCAAAGCACTATATATGCAAGTGAGCTC