| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF017I18 | Sequence | 451 | 003828 (4) | 736 | 001350 (4) | emb|CDP07546.1| | 1e-69 | unnamed protein product [Coffea canephora] | |||
| JMSF020H21 | Sequence | 704 | 003828 (4) | ref|XP_009761616.1| | 6e-15 | PREDICTED: probable protein phosphatase 2C 55 [Nicotiana sylvestris] ref|XP_0097 | 740 | 001350 (4) | emb|CDP07546.1| | 5e-72 | unnamed protein product [Coffea canephora] |
| JMSF020O10 | Sequence | 670 | 003828 (4) | 723 | 001350 (4) | emb|CDP07546.1| | 4e-72 | unnamed protein product [Coffea canephora] | |||
| JMSF041E03 | Sequence | 814 | 003828 (4) | ref|XP_009614756.1| | 2e-25 | PREDICTED: probable protein phosphatase 2C 55 [Nicotiana tomentosiformis] | 838 | 001350 (4) | emb|CDP07546.1| | 6e-74 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF041E03+ GCCCTGACANTGATGGAATAGAAATTGCACGAGA
____________________________________________________________
consensus GCCCTGACANTGATGGAATAGAAATTGCACGAGA
. : . : . : . : . : . :
JMSF020H21+ CGATTAACTGTATGTAGATTCGCCTGAGC
JMSF041E03+ AAATGCGCCAACAACTGAAAGATTCTTCCTTCGATTAACTGTATGTAGATTCGCCTGAGC
____________________________________________________________
consensus AAATGCGCCAACAACTGAAAGATTCTTCCTTCGATTAACTGTATGTAGATTCGCCTGAGC
. : . : . : . : . : . :
JMSF020H21+ AGCAGCTAAAGTTCCAGGTCGAACAAAATCATGCACACCAGCAAGTGATGCAGATGGCAG
JMSF020O10+ CCAGGTCGAACAAAATCATGCACACCAGCAAGTGATGCAGATGGCAG
JMSF041E03+ AGCAGCTAAAGTTCCAGGTCGAACAAAATCATGCACACCAGCAAGTGATGCAGATGGCAG
____________________________________________________________
consensus AGCAGCTAAAGTTCCAGGTCGAACAAAATCATGCACACCAGCAAGTGATGCAGATGGCAG
. : . : . : . : . : . :
JMSF020H21+ TGAATGGAACAGCTTTGAATGGCCTGATAACAACAATCTACCCTGAGCAACCAAAATCTC
JMSF020O10+ TGAATGGGACAGCTTTGAATGGCCTGATAACAACAATCTACCCTGAGCAACCAAAATCTC
JMSF041E03+ TGAATGGAACAGCTTTGAATGGCCTGATAACAACAATCTACCCTGAGCAACCAAAATCTC
____________________________________________________________
consensus TGAATGGAACAGCTTTGAATGGCCTGATAACAACAATCTACCCTGAGCAACCAAAATCTC
. : . : . : . : . : . :
JMSF020H21+ CACCGACTCCTGACACCCACTTTGACAGCCAAAAATCAATCTTTCAAATCCATGCTTTTT
JMSF020O10+ CACCGACTCCTGACACCCACTTTGACAGCCAAAAATCAATCTTTCAAATCCATGCTTTTT
JMSF041E03+ CACCGACTCCTGACACCCACTTTGACAGCCAAAAATCAATCTTTCAAATCCATGCTTTTT
____________________________________________________________
consensus CACCGACTCCTGACACCCACTTTGACAGCCAAAAATCAATCTTTCAAATCCATGCTTTTT
. : . : . : . : . : . :
JMSF020H21+ TGCACTCCGTACTATCAACAGGTTTTTAAACGGCATATTGGCTCTTCAAAAAATATAGGT
JMSF017I18+ TTCAAAAAATATAGGT
JMSF020O10+ TGCACTCCGTACTATCAACAGGTTTTTAAACGGCATATTGGCTCTTCAAAAAATATAGGT
JMSF041E03+ TGCACTCCGTACTATCAACAGGTTTTTAAACGGCATATTGGCTCTTCAAAAAATATAGGT
____________________________________________________________
consensus TGCACTCCGTACTATCAACAGGTTTTTAAACGGCATATTGGCTCTTCAAAAAATATAGGT
. : . : . : . : . : . :
JMSF020H21+ TCCTTTGCACCCAACTATATGTGGACACATGGAAACAGAACCACCAACCCAACAAGCAAA
JMSF017I18+ TCCTTTGCACCCAACTATATGTGGACACATGGAAACAGAACCACCAACCCAACAAGCAAA
JMSF020O10+ TCCTTTGCACCCAACTATATGTGGACACATGGAAACAGAACCACCAACCCAACAAGCAAA
JMSF041E03+ TCCTTTGCACCCAACTATATGTGGACACATGGAAACAGAACCACCAACCCAACAAGCAAA
____________________________________________________________
consensus TCCTTTGCACCCAACTATATGTGGACACATGGAAACAGAACCACCAACCCAACAAGCAAA
. : . : . : . : . : . :
JMSF020H21+ AGAAGATATCATAACTCTAACTACATTTACTGACCAGTAGAAAATCAGTTTGCTGAACAG
JMSF017I18+ AGAAGATATCATAACTCTAACTACATTTACTGACCAGTAGAAAATCAGTTTGCTGAACAG
JMSF020O10+ AGAAGATATCATAACTCTAACTACATTTACTGACCAGTAGAAAATCAGTTTGCTGAACAG
JMSF041E03+ AGAAGATATCATAACTCTAACTACATTTACTGACCAGTAGAAAATCAGTTTGCTGAACAG
____________________________________________________________
consensus AGAAGATATCATAACTCTAACTACATTTACTGACCAGTAGAAAATCAGTTTGCTGAACAG
. : . : . : . : . : . :
JMSF020H21+ CCTGCACTAATACACCTCAAATTACGAAATCCAGACACCTTTGCGAATGAAGAAAGAGAT
JMSF017I18+ CCTGCACTAATACACCTCAAATTACGAAATCCAGACACCTTTGCGAATGAAGAAAGAGAT
JMSF020O10+ CCTGCACTAATACACCTCAAATTACGAAATCCAGACACCTTTGCGAATGAAGAAAGAGAT
JMSF041E03+ CCTGCACTAATACACCTCAAATTACGAAATCCAGACACCTTTGCGAATGAAGAAAGAGAT
____________________________________________________________
consensus CCTGCACTAATACACCTCAAATTACGAAATCCAGACACCTTTGCGAATGAAGAAAGAGAT
. : . : . : . : . : . :
JMSF020H21+ CAAAAGAGAACGCCAATAATCAAAGCCAAAGTATTGAGTTCGTCGATTCACTATCACGAA
JMSF017I18+ CAAAAGAGAACGCCAATAATCAAAGCCAAAGTATTGAGTTCGTCGATTCACTATCACGAA
JMSF020O10+ CAAAAGAGAACGCCAATAATCAAAGCCAAAGTATTGAGTTCGTCGATTCACTATCACGAA
JMSF041E03+ CAAAAGAGAACGCCAATAATCAAAGCCAAAGTATTGAGTTCGTCGATTCACTATCACGAA
____________________________________________________________
consensus CAAAAGAGAACGCCAATAATCAAAGCCAAAGTATTGAGTTCGTCGATTCACTATCACGAA
. : . : . : . : . : . :
JMSF020H21+ TCTCTCGATCGTCGGTTAGCGGCAACCGACGAGCCTGCCGCCCTTTTTTCCCGCCAAAGC
JMSF017I18+ TCTCTCGATCGTCGGTTAGCGGCAACCGACGAGCCTGCCGCCCTTTTTTCCCGCCAAAGC
JMSF020O10+ TCTCTCGATCGTCGGTTAGCGGCAACCGACGAGCCTGCCGCCCTTTTTTCCCGCCAAAGC
JMSF041E03+ TCTCTCGATCGTCGGTTAGCGGCAACCGACGAGCCTGCCGCCCTTTTTTCCCGCCAAAGC
____________________________________________________________
consensus TCTCTCGATCGTCGGTTAGCGGCAACCGACGAGCCTGCCGCCCTTTTTTCCCGCCAAAGC
. : . : . : . : . : . :
JMSF020H21+ AATAGCTCTCTCGCTCGATAGCTATGGCGGAACGATGGTGTTGATCGTAGAGACGGCGAA
JMSF017I18+ AATAGCTCTCTCGCTCGATAGCTATGGCGGAACGATGGTGTTGATCGTAGAGACGGCGAA
JMSF020O10+ AATAGCTCTCTCGCTCGATAGCTATGGCGGAACGATGGTGTTGATCGTAGAGACGGCGAA
JMSF041E03+ AATAGCTCTCTCGCTCGATAGCTATGGCGGAACGATGGTGTTGATCGTAGAGACGGCGAA
____________________________________________________________
consensus AATAGCTCTCTCGCTCGATAGCTATGGCGGAACGATGGTGTTGATCGTAGAGACGGCGAA
. : . : . : . : . : . :
JMSF020H21+ GTCCAGGTGTGGGTAACACCGGGCAGAAAAACTGATCAGGTGAAAGTTCTGGGAGCTTTG
JMSF017I18+ GTCCAGGTGTGGGTAACACCGGGCAGAAAAACTGATCAGGTGAAAGTTCTGGGAGCTTTG
JMSF020O10+ GTCCAGGTGTGGGTAACACCGGGCAGAAAAACTGATCAGGTGAAAGTTCTGGGAGCTTTG
JMSF041E03+ GTCCAGGTGTGGGTAACACCGGGCAGAAAAACTGATCAGGTGAAAGTTCTGGGAGCTTTG
____________________________________________________________
consensus GTCCAGGTGTGGGTAACACCGGGCAGAAAAACTGATCAGGTGAAAGTTCTGGGAGCTTTG
. : . : . : . : . : . :
JMSF020H21+ AGCTAATCTCCCTC
JMSF017I18+ AGCTAATCTCCCTC
JMSF020O10+ AGCTAATCTCCCTCAAACCCT
JMSF041E03+ AGCTAATCTCCCTCAAACCCTAAAAATTTGGGGGAAGTTTGACTTTTCAATCATATCCCA
____________________________________________________________
consensus AGCTAATCTCCCTCAAACCCTAAAAATTTGGGGGAAGTTTGACTTTTCAATCATATCCCA