| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS021B12 | Sequence | 642 | 003820 (7) | ref|XP_009796601.1| | 2e-32 | PREDICTED: protein TIC110, chloroplastic-like, partial [Nicotiana sylvestris] | |||||
| JMFS047F09 | Sequence | 616 | 003820 (7) | emb|CDP09261.1| | 6e-112 | unnamed protein product [Coffea canephora] | |||||
| JMFS095G08 | Sequence | 626 | 003820 (7) | ref|XP_002276796.2| | 6e-88 | PREDICTED: protein TIC110, chloroplastic [Vitis vinifera] emb|CBI15848.3| unname | |||||
| JMFS149F08 | Sequence | 528 | 003820 (7) | ref|XP_009796601.1| | 2e-17 | PREDICTED: protein TIC110, chloroplastic-like, partial [Nicotiana sylvestris] | |||||
| JMSF003N13 | Sequence | 111 | 003820 (7) | 734 | 001272 (3) | ref|XP_009791003.1| | 3e-95 | PREDICTED: protein TIC110, chloroplastic-like [Nicotiana sylvestris] | |||
| JMSF032G03 | Sequence | 281 | 003820 (7) | 617 | 001272 (3) | ref|XP_008225261.1| | 1e-55 | PREDICTED: protein TIC110, chloroplastic-like [Prunus mume] | |||
| JMSF040G01 | Sequence | 336 | 003820 (7) | 866 | 001272 (3) | ref|XP_009791003.1| | 4e-113 | PREDICTED: protein TIC110, chloroplastic-like [Nicotiana sylvestris] | |||
This contig is upended
. : . : . : . : . : . :
JMFS047F09+ CTCTAGCAAAACGACTG
____________________________________________________________
consensus CTCTAGCAAAACGACTG
. : . : . : . : . : . :
JMFS047F09+ GCATCAGGATGGTTTTTCAATGAGATTAGCAAATTATTGAAGGCCAAAATCTTATCAAGC
____________________________________________________________
consensus GCATCAGGATGGTTTTTCAATGAGATTAGCAAATTATTGAAGGCCAAAATCTTATCAAGC
. : . : . : . : . : . :
JMFS047F09+ TCTTCAGTGACACGTGTAGCTTCCCCGGGTGCTCTTGTCCTGGACTTCAATATGGAGACA
____________________________________________________________
consensus TCTTCAGTGACACGTGTAGCTTCCCCGGGTGCTCTTGTCCTGGACTTCAATATGGAGACA
. : . : . : . : . : . :
JMFS047F09+ GCTCTTGATATGTTTTCTTCCACAAGCTTTCTTGTATGCTCCCTAAACATGCCTTCTGCA
____________________________________________________________
consensus GCTCTTGATATGTTTTCTTCCACAAGCTTTCTTGTATGCTCCCTAAACATGCCTTCTGCA
. : . : . : . : . : . :
JMFS047F09+ AACTCATCAGAAAGTAGATACGAAAGCTGTGCTTCTCTGAGACTGACCAGTTGGTCCACA
____________________________________________________________
consensus AACTCATCAGAAAGTAGATACGAAAGCTGTGCTTCTCTGAGACTGACCAGTTGGTCCACA
. : . : . : . : . : . :
JMFS047F09+ TTGACATCTCGGCCAACAGATTTAAGTTTGGAAGCATACAATCTTTGCGCATTGTCCCGA
____________________________________________________________
consensus TTGACATCTCGGCCAACAGATTTAAGTTTGGAAGCATACAATCTTTGCGCATTGTCCCGA
. : . : . : . : . : . :
JMFS047F09+ ACAGCAACCTCAACCTGGGCATCAGTGACCTTGAACATACGTTTCCAAGGCAAAAGGAAG
JMFS095G08+ TTTCCAAGGCAAAAGGAAG
____________________________________________________________
consensus ACAGCAACCTCAACCTGGGCATCAGTGACCTTGAACATACGTTTCCAAGGCAAAAGGAAG
. : . : . : . : . : . :
JMFS047F09+ GAAGAGGCATCTCTAAATACAATATTTGAAACATATATCAGCTTCTGGAATGCTCGTCGC
JMFS095G08+ GAAGAGGCATCTCTAAATACAATATTTGAAACATATATCAGCTTCTGGAATGCTCGTCGC
____________________________________________________________
consensus GAAGAGGCATCTCTAAATACAATATTTGAAACATATATCAGCTTCTGGAATGCTCGTCGC
. : . : . : . : . : . :
JMFS047F09+ TGTTCTAGATCACCATCACGATCTCCTGTTTCAAGTCTTTGCCTGAAAATCCGCCTACCA
JMFS095G08+ TGTTCTAGATCACCATCACGATCTCCTGTTTCAAGTCTTTGCCTGAAAATCCGCCTACCA
____________________________________________________________
consensus TGTTCTAGATCACCATCACGATCTCCTGTTTCAAGTCTTTGCCTGAAAATCCGCCTACCA
. : . : . : . : . : . :
JMFS047F09+ ATCTCCATATGCATAGCTGCTGCATCTGGATCATCAATGCCCAATGCATTTTTAAATTTA
JMFS095G08+ ATCTCCATATGCATAGCTGCTGCATCTGGATCATCAATGCCCAATGCATTTTTAAATTTA
____________________________________________________________
consensus ATCTCCATATGCATAGCTGCTGCATCTGGATCATCAATGCCCAATGCATTTTTAAATTTA
. : . : . : . : . : . :
JMFS047F09+ ATGATAGTGTCCACTTCGTCGCCTCTAAGATCTTCATTTCCAGGAGGAAGGACAGCAGT
JMFS095G08+ ATGATAGTGTCCACTTCGTCGCCTCTAAGATCTTCATTTCCAGGAGGAAGGACAGCAGTT
____________________________________________________________
consensus ATGATAGTGTCCACTTCGTCGCCTCTAAGATCTTCATTTCCAGGAGGAAGGACAGCAGTT
. : . : . : . : . : . :
JMFS095G08+ ACATACCGGCAGTATATATCACACAGCTCTGCATTGAACGCCTCGTGCTGTTTGCTGACA
JMFS021B12+ CTGTTTGCTGACA
____________________________________________________________
consensus ACATACCGGCAGTATATATCACACAGCTCTGCATTGAACGCCTCGTGCTGTTTGCTGACA
. : . : . : . : . : . :
JMFS095G08+ CCGTACTTGTTTGCAATAGCGTCAATATCTTCCTTCTTCAAAGCTGCCGGGTCGTCACAG
JMFS021B12+ CCGTACTGTTTTGCAATAGCGTCAATATCTTCCTTCTTCAAAGCTGCCGGGTCGTCACAG
____________________________________________________________
consensus CCGTACTTTTTTGCAATAGCGTCAATATCTTCCTTCTTCAAAGCTGCCGGGTCGTCACAG
. : . : . : . : . : . :
JMFS095G08+ CCAGCCACATAATTATGCAAATTCACGGCCGCAACCTCAGGAGCACAAGCGTTCAAAGCA
JMFS149F08+ CGCAACCTCAGGAGCACAAGCGTTCAAAGCA
JMFS021B12+ CCAGCCACATAATTATGCAAATTCACGGCCGCAACCTCAGGAGCACAAGCGTTCAAAGCA
____________________________________________________________
consensus CCAGCCACATAATTATGCAAATTCACGGCCGCAACCTCAGGAGCACAAGCGTTCAAAGCA
. : . : . : . : . : . :
JMFS095G08+ TAAGCCGCGCCAGCGCCGGCAGCTCCAAGCGCCACAGCCCCACCCAAGCCGGCATTGCGG
JMFS149F08+ TAAGCCGCGCCAGCGCCGGCAGCTCCAAGCGCCACAGCCCCACCCAAGCCGGCATTGCGG
JMFS021B12+ TAAGCCGCGCCAGCGCCGGCAGCTCCAAGCGCCACAGCCCCACCCAAGCCGGCATTGCGG
____________________________________________________________
consensus TAAGCCGCGCCAGCGCCGGCAGCTCCAAGCGCCACAGCCCCACCCAAGCCGGCATTGCGG
. : . : . : . : . : . :
JMFS095G08+ GACCCGCCGAACCGGAATCCGAGTCCATAACCAGCAGCGACGGCGCCGGCGAAGATAATA
JMFS149F08+ GACCCGCCGAACCGGAATCCGAGTCCATAACCAGCAGCGACGGCGCCGGCGAAGATAATA
JMFS021B12+ GACCCGCCGAACCGGAATCCGAGTTCATAACCAGCAGCGACGGCGCCGGCGAAGATAATA
____________________________________________________________
consensus GACCCGCCGAACCGGAATCCGAGTCCATAACCAGCAGCGACGGCGCCGGCGAAGATAATA
. : . : . : . : . : . :
JMFS095G08+ GCCGAGCTCGCAATTCTAATCGGAGGCGACATGGAATCCACCAGCGCCTGGATGCCGGAC
JMFS149F08+ GCCGAGCTCGCAATTCTAATCGGAGGCGACATGGAATCCACCAGCGCCTGGATGCCGGAC
JMFS021B12+ GCCGAGCTCGCAATTCTAATCGGAGGCGACATGGAATCCACCAGCGCCTGGATGCCGGAC
____________________________________________________________
consensus GCCGAGCTCGCAATTCTAATCGGAGGCGACATGGAATCCACCAGCGCCTGGATGCCGGAC
. : . : . : . : . : . :
JMFS095G08+ AGCTCTC
JMFS149F08+ AGCTCTCTCTTACCTCCGAACACATCCGGCTGGACAGGAATTGCAGCAGCGGCAGTGCCG
JMFS021B12+ AGCTCTCTCTTACCTCCGAACACATCCGGCTGGACAGGAATTGCAGCAGCGGCAGTGCCG
JMSF040G01+ TCCGGCTGGACCGGAATTNCNGCAGCGGCNGTNCCG
____________________________________________________________
consensus AGCTCTCTCTTACCTCCGAACACATCCGGCTGGACAGGAATTGCAGCAGCGGCAGTGCCG
. : . : . : . : . : . :
JMFS149F08+ GCGGAAGAACTAATCGATGTTGAAGGCTGATCGGAAGAGGAGCTAACGGCGGAGATTCGA
JMFS021B12+ GCGGAAGAACTAATCGATGTTGAAGGCTGATCGGAAGAGGAGCTAACGGCGGAGATTCGA
JMSF032G03+ GGAAGAGGAGCTAACNGCGGNGATTNGA
JMSF040G01+ GCGGAANAANTNATCGATNTTGAAGGCTGATNGGAAGAGGAGCTAACGGCGGAGATTCGA
____________________________________________________________
consensus GCGGAAGAACTAATCGATGTTGAAGGCTGATCGGAAGAGGAGCTAACGGCGGAGATTCGA
. : . : . : . : . : . :
JMFS149F08+ TAGCGGAAGTGATAGCGGTTGCGCGACGCGGCGGTGAGGCGGAGAGGGGCGGGGCTGAGG
JMFS021B12+ TAGCGGAAGTGATAGCGGTTGCGCGACGCGGCGGTGAGGCGGAGAGGGGCGGGGCTGAGG
JMSF032G03+ TAGCGGAANTNATAGCGGTTTCCCGACCCGGCNGTNAGGCGGANAGGGGCGGGGCTNAGG
JMSF040G01+ TAGCGGAANTNATAGCGGTTNCNCGACCCGGCNGTNAGGCGGAGAGGGGCGGGGCTGAGG
____________________________________________________________
consensus TAGCGGAAGTGATAGCGGTTGCGCGACGCGGCGGTGAGGCGGAGAGGGGCGGGGCTGAGG
. : . : . : . : . : . :
JMFS149F08+ AAGGGGGAGAAGAGAGCTGTGCGGTTCGGAGATGGATTCGTTGAGAGAAGAAGCGAAGGG
JMFS021B12+ AAGGGGGAGAAGAGAGCTGTGCGGTTCGGAGATGGATTCGTTGAGAGAAGAAGCGAAGGG
JMSF003N13+ AAGCGAAGGG
JMSF032G03+ AAGGGGGAGAANANANCTTTNCGGTTTGGAGATGGATTNNTTGAGAGAAGAAGCGAAGGG
JMSF040G01+ AAGGGGGAGAAGANAACTTTNCGGTTNGGAGATGGATTNGTTNAGANAAGAANCGAAGGG
____________________________________________________________
consensus AAGGGGGAGAAGAGAGCTTTGCGGTTCGGAGATGGATTCGTTGAGAGAAGAAGCGAAGGG
. : . : . : . : . : . :
JMFS149F08+ TTCATTGTGTGAAATGGGAAGAAGAAAAGAGAAAGGGATGGCGGGTAGGGGTTAGGGGGG
JMFS021B12+ TTCATTGTGTGAAATGGGAAGAAGAAAAGAGAAAGGGATGGCGGGTAGGGGTTAGGGGGG
JMSF003N13+ TTCCTTNTNTGAAATGGGAAGAAGAAAAGAGAAAGGGATGGCGGGTNGGGGTTNGGGGGG
JMSF032G03+ TTCNTTNTNTGAAATGGGAAGAAGAAAAGAGAAAGGGATGGCGGGTNGGGGTTNGGGGGG
JMSF040G01+ TTCNTTNTNTGAAATGGGAAGAAGAAAAGAGAAAGGGATGGCGGGTAGGGGTTAGGGGGG
____________________________________________________________
consensus TTCATTGTGTGAAATGGGAAGAAGAAAAGAGAAAGGGATGGCGGGTAGGGGTTAGGGGGG
. : . : . : . : . : . :
JMFS149F08+ GGGGGTATAGGGTTTAA
JMFS021B12+ GGGGGTATAGGGTTTAACGGAGAGTACAG
JMSF003N13+ GGGGGTATAGGGTTTAACGGAGAGTACAGTGAGAGCCGGT
JMSF032G03+ GGGGGTATAGGGTTTAACGGAGAGTACAGTGAGAGCCGGTAGAGGAAAATGGAAATGA
JMSF040G01+ GGGGGTATAGGGTTTAACGGAGAGTACAGTGAGAGCCGGTAGAGGAAAATGGAAATGATC
____________________________________________________________
consensus GGGGGTATAGGGTTTAACGGAGAGTACAGTGAGAGCCGGTAGAGGAAAATGGAAATGATC