Contig 003817:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006H01Sequence401003817 (3)ref|XP_010644252.1|6e-28PREDICTED: double-strand break repair protein MRE11 isoform X3 [Vitis vinifera]
JMSF031N01Sequence652003817 (3)ref|XP_011044532.1|5e-94PREDICTED: double-strand break repair protein MRE11 isoform X2 [Populus euphrat712001411 (3)ref|XP_009787661.1|6e-35PREDICTED: double-strand break repair protein MRE11 isoform X2 [Nicotiana sylve
JMSF039M07Sequence344003817 (3)ref|XP_010644252.1|3e-13PREDICTED: double-strand break repair protein MRE11 isoform X3 [Vitis vinifera]675001411 (3)ref|XP_009787660.1|3e-29PREDICTED: double-strand break repair protein MRE11 isoform X1 [Nicotiana sylve

Alignment

This contig is upended


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JMSF031N01+                                                                   AAAA
                      ____________________________________________________________
consensus                                                                     AAAA
 
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JMSF031N01+           TAATTCACAAGATTGCATGCTGAAAGAATATCAACAGCAGAAAGGTTGTCCACGCCAGCA
                      ____________________________________________________________
consensus             TAATTCACAAGATTGCATGCTGAAAGAATATCAACAGCAGAAAGGTTGTCCACGCCAGCA
 
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JMSF031N01+           GGATCATCATGATTCCCATGAATACTGAAAACTGGCAATCCAACATTAAAGTGAGGATCT
                      ____________________________________________________________
consensus             GGATCATCATGATTCCCATGAATACTGAAAACTGGCAATCCAACATTAAAGTGAGGATCT
 
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JMSF031N01+           TCATAGTTTACATGACCAAATACATTTGCAAAGTTTATTGTCTGATCGCTGACAACTTGG
                      ____________________________________________________________
consensus             TCATAGTTTACATGACCAAATACATTTGCAAAGTTTATTGTCTGATCGCTGACAACTTGG
 
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JMSF031N01+           AACTGCACTGGTTGATCATTGAGACAGTACCGACGCAGAATCTCGATGGCTTTAACTAAT
                      ____________________________________________________________
consensus             AACTGCACTGGTTGATCATTGAGACAGTACCGACGCAGAATCTCGATGGCTTTAACTAAT
 
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JMSF031N01+           GTAGTCCTGGATGGTTTATTCTCATGAAAAAGATCACCTCCAAGAAGCAAAAAGTCCACC
JMSF006H01+                                      AAAAGATCACCTCCAAGAAGCAAAAAGTCCACC
                      ____________________________________________________________
consensus             GTAGTCCTGGATGGTTTATTCTCATGAAAAAGATCACCTCCAAGAAGCAAAAAGTCCACC
 
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JMSF031N01+           TGATTTTTCTCAGCTATAGAACATATCTCCTCAAACGA-CTGAAATGAATCATGCCTACG
JMSF006H01+           TGATTTTTCTCAGCTATAGAACATATCTCCTCAAACGA-CTGAAATGAATCATGCCTACG
JMSF039M07+                           TAGAACATATCTCCTCAAACGANCTGAAATGAATCATGCCTACG
                      ____________________________________________________________
consensus             TGATTTTTCTCAGCTATAGAACATATCTCCTCAAACGA-CTGAAATGAATCATGCCTACG
 
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JMSF031N01+           TATTTCATCCTTCTCCAAATAACCCAAGTGACAATCCGTAGCCACAAGTATCTTAAGTGT
JMSF006H01+           TATTTCATCCTTCTCCAAATAACCCAAGTGACAATCCGTAGCCACAAGTATCTTAAGTGT
JMSF039M07+           TATTTCATCCTTCTCCAAATAACCCAAGTGACAATCCGTAGCCACAAGTATCTTAAGTGT
                      ____________________________________________________________
consensus             TATTTCATCCTTCTCCAAATAACCCAAGTGACAATCCGTAGCCACAAGTATCTTAAGTGT
 
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JMSF031N01+           ATTTTTCTCGTCTTCCCTGGAAGAATCACCCATTTGGACGAAAAGTGAACTAAGTCCTCG
JMSF006H01+           ATTTTTCTCGTCTTCCCTGGAAGAATCACCCATTTGGACGAAAAGTGAACTAAGTCCTCG
JMSF039M07+           ATTTTTCTCGTCTTCCCTGGAAGAATCACCCATTTGGACGAAAAGTGAACTAAGTCCTCG
                      ____________________________________________________________
consensus             ATTTTTCTCGTCTTCCCTGGAAGAATCACCCATTTGGACGAAAAGTGAACTAAGTCCTCG
 
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JMSF031N01+           ACTTTCTTAGGAAACGAGCGGGGATTAGAAGAGATGAAAGTAAAAATTAGTGATATGGAA
JMSF006H01+           ACTTTCTTAGGAAACGAGCGGGGATTAGAAGAGATGAAAGTAAAAATTAGTGATATGGAA
JMSF039M07+           ACTTTCTTAGGAAACGAGCGGGGATTAGAAGAGATGAAAGTAAAAATTAGTGATANGGAA
                      ____________________________________________________________
consensus             ACTTTCTTAGGAAACGAGCGGGGATTAGAAGAGATGAAAGTAAAAATTAGTGATATGGAA
 
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JMSF031N01+           ATTGTTTCAAATAATGGAGATTAGGCCTTCGTGACTCGTGAGTTGAGTAGAGGGGAGCAG
JMSF006H01+           ATTGTTTCAAATAATGGAGATTAGGCCTTCGTGACTCGTGAGTTGAGTAGAGGGGAGCAG
JMSF039M07+           ATTGTTTCAAATAATGGAGATTAGGCCTTCGTNACTCGTGAGTTGAGTAGAGGGGAGCAG
                      ____________________________________________________________
consensus             ATTGTTTCAAATAATGGAGATTAGGCCTTCGTGACTCGTGAGTTGAGTAGAGGGGAGCAG
 
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JMSF031N01+           TGGAGTTTAGAATCCGTTGGGACT-CTGAGCATCACTGCGGTGACGACT           
JMSF006H01+           TGGAGTTTAGAATCCGTTGGGACT-CTGAGCATCACTGCGGTGACGACTGACAATTG   
JMSF039M07+           NGGAGTTTAGAATCCNTTGGGACTCCTGAGCATCACTGCGGTGACGACTGACAATTGACC
                      ____________________________________________________________
consensus             TGGAGTTTAGAATCCGTTGGGACT-CTGAGCATCACTGCGGTGACGACTGACAATTGACC