Contig 003812:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF047J11+                                                                     CT
                      ____________________________________________________________
consensus                                                                       CT
 
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JMSF047J11+           GACTTGCTGCTTGGCACACCATAACTCCTTTCAATCCTGGACTGAACTTCAAAATCTATG
JMSF023J06+                                               CTGGACTGAACTTCAAAATCTATG
                      ____________________________________________________________
consensus             GACTTGCTGCTTGGCACACCATAACTCCTTTCAATCCTGGACTGAACTTCAAAATCTATG
 
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JMSF047J11+           CAAAAGACTAGTCTGGAGCACAAGACAATTAGACACACAAAACGGAAGGTCAAACTAAAG
JMSF023J06+           CAAAAGACTAGTCTGGAGCACAAGACAATTAGACACACAAAACGGAAGGTCAAACTAAAG
                      ____________________________________________________________
consensus             CAAAAGACTAGTCTGGAGCACAAGACAATTAGACACACAAAACGGAAGGTCAAACTAAAG
 
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JMSF047J11+           CAAGGATCGATGAATTTGGGCTAACTTGAGGCAGACTTTAGAGGTGATGGAATTGGAAAT
JMSF023J06+           CAAGGATCGATGAATTTGGGCTAACTTGAGGCAGACTTTAGAGGTGATGGAATTGGAAAT
                      ____________________________________________________________
consensus             CAAGGATCGATGAATTTGGGCTAACTTGAGGCAGACTTTAGAGGTGATGGAATTGGAAAT
 
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JMSF047J11+           TTCAACAAGAAACAAAGCTGGGCATAACAAGAAGAAGAAGAAGAAGAAGAAGAAGACCAA
JMSF023J06+           TTCAACAAGAAACAAAGCTGGGCATAACAAGAAGAAGAAGAAGAAGAAGAAGAAGACCAA
                      ____________________________________________________________
consensus             TTCAACAAGAAACAAAGCTGGGCATAACAAGAAGAAGAAGAAGAAGAAGAAGAAGACCAA
 
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JMSF047J11+           ATTTAGTTTCTAAAACTCGGTTATTTAGCTAATCCTATGGATAAAACAAGCAAAGAAAAA
JMSF023J06+           ATTTAGTTTCTAAAACTCGGTTATTTAGCTAATCCTATGGATAAAACAAGCAAAGAAAAA
                      ____________________________________________________________
consensus             ATTTAGTTTCTAAAACTCGGTTATTTAGCTAATCCTATGGATAAAACAAGCAAAGAAAAA
 
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JMSF047J11+           AAGATGATTGGCACCCATGGGTAGCTAGTAAAAGAGGATAGTGAGAGGGCTGAATAGGTT
JMSF023J06+           AAGATGATTGGCACCCATGGGTAGCTAGTAAAAGAGGATAGTGAGAGGGCTGAATAGGTT
                      ____________________________________________________________
consensus             AAGATGATTGGCACCCATGGGTAGCTAGTAAAAGAGGATAGTGAGAGGGCTGAATAGGTT
 
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JMSF047J11+           CACAGAAGAAACATGTTTACAGAATCACCCTGCAATATAAGTTCAAGGAGATAACATAAC
JMSF023J06+           CACAGAAGAAACATGTTTACAGAATCACCCTGCAATATAAGTTCAAGGAGATAACATAAC
JMSF039I06+                                   TCACCCTGCAATATAAGTTCAAGGAGATAACATAAC
                      ____________________________________________________________
consensus             CACAGAAGAAACATGTTTACAGAATCACCCTGCAATATAAGTTCAAGGAGATAACATAAC
 
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JMSF047J11+           GAAACACATCAATCGATAGGCCCAGCCACCGCATACTATTCGCTTATATACTCAACCACA
JMSF023J06+           GAAACACATCAATCGATAGGCCCAGCCACCGCATACTATTCGCTTATATACACAACCACA
JMSF039I06+           GAAACACATCAATCGATAGGCCCAGCCACCGCATACTATTCGCTTATATACACAACCACA
                      ____________________________________________________________
consensus             GAAACACATCAATCGATAGGCCCAGCCACCGCATACTATTCGCTTATATACACAACCACA
 
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JMSF047J11+           ACAGCATACACCAGAGAGATCAATTTTTGTTCACAGGAAAAATATCTGCAGGGAAGATCG
JMSF023J06+           ACAGCATACACCAGAGAGATCAATTTTTGTTCACAGGAAAAATATCTGCAGGGAAGATCG
JMSF039I06+           ACAGCATACACCAGAGAGATCAATTTTTGTTCACAGGAAAAATATCTGCAGGGAAGATCG
                      ____________________________________________________________
consensus             ACAGCATACACCAGAGAGATCAATTTTTGTTCACAGGAAAAATATCTGCAGGGAAGATCG
 
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JMSF047J11+           TTTGCCCAGTGCTCAGAAGGCCCAAACTTAAACAAATTTGTTAGTGTGAGGTAGATGGGG
JMSF023J06+           TTTGCCCAGTGCTCAGAAGGCCCAAACTTAAACAAATTTGTTAGTGTGAGGTAGATGGGG
JMSF039I06+           TTTGCCCAGTGCTCAGAAGGCCCAAACTTAAACAAATTTGTTAGTGTGAGGTAGATGGGG
                      ____________________________________________________________
consensus             TTTGCCCAGTGCTCAGAAGGCCCAAACTTAAACAAATTTGTTAGTGTGAGGTAGATGGGG
 
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JMSF047J11+           AAGAAGGACAGGAGAGAAGTGAAGTGAACAGTGAAGCAGAGAAGCAGAGAGTTGCTGAAT
JMSF023J06+           AAGAAGGACAGGAGAGAAGTGAAGTGAACAGTGAAGCAGAGAAGCAGAGAGTTGCTGAAT
JMSF039I06+           AAGAAGGACAGGAGAGAAGTGAAGTGAACAGTGAAGCAGAGAAGCAGAGAGTTGCTGAAT
                      ____________________________________________________________
consensus             AAGAAGGACAGGAGAGAAGTGAAGTGAACAGTGAAGCAGAGAAGCAGAGAGTTGCTGAAT
 
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JMSF023J06+           GAGGAAA                                                     
JMSF039I06+           GAGGAAAGAAGTAAGGAAACAAAGAGATGGTATGACTATATAAAAAATTTCTAGTTCAAG
                      ____________________________________________________________
consensus             GAGGAAAGAAGTAAGGAAACAAAGAGATGGTATGACTATATAAAAAATTTCTAGTTCAAG
 
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JMSF039I06+           AAATTTTTTTAGGCTTTAAGCCAATGAGGCTTCCATTCTTTTTTACAAATCTTATGCTTA
                      ____________________________________________________________
consensus             AAATTTTTTTAGGCTTTAAGCCAATGAGGCTTCCATTCTTTTTTACAAATCTTATGCTTA
 
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JMSF039I06+           TATCATACATACATACATACAGTAATTAATTACAGCAAATTGTATCCCATACTGACTCAA
                      ____________________________________________________________
consensus             TATCATACATACATACATACAGTAATTAATTACAGCAAATTGTATCCCATACTGACTCAA
 
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JMSF039I06+           AAATAATTGAATACAATATTTTAATGTCAAATGTCGATACACAAGAAATCTGCCTATTTT
                      ____________________________________________________________
consensus             AAATAATTGAATACAATATTTTAATGTCAAATGTCGATACACAAGAAATCTGCCTATTTT
 
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JMSF039I06+           GGACATAACCATCATTGTCGCTGTCTACTGAACCAATGAGCTAAATCTGTGCGAATAATT
                      ____________________________________________________________
consensus             GGACATAACCATCATTGTCGCTGTCTACTGAACCAATGAGCTAAATCTGTGCGAATAATT
 
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JMSF039I06+           ACACGAATATATACTTGACTAGACAAATCACTTCTACCCTTCAATCCTTAATAACAGGCC
                      ____________________________________________________________
consensus             ACACGAATATATACTTGACTAGACAAATCACTTCTACCCTTCAATCCTTAATAACAGGCC